Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015126

Physical Location & Seq

Genomic Coordinates Reverse (-)

37697943 .. 37700185

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAGGAACCCATCTTCGTCTTCATCCTCGGGCGCCAAAGCAAAATCATCATCAGCAGCAGCAGCAGGAGTGTCGTCTTCGTCGAGCAAGACGCCGTGCTGCGTCAAGGTGGGTCTGAAGAGAGGTCCCTGGACTCCTGAAGAAGATGAGCTCTTAGCCAACTACATCAAGAAAGAAGGCGAGGGCCGGTGGCGAACCCTCCCGAAGCGCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGTCCTTCTGTCAAGCGCGGCCAGATCGCCTCCGATGAAGAAGATCTCATCCTCCGCCTCCACCGACTCCTCGGCAATAGATGGTCCCTGATTGCTGGGAGGATTCCGGGGCGTACAGACAATGAGATAAAGAACTACTGGAACACTCACCTCAGTAAGAAGCTGATTAGTCAGGGCATAGATCCCAGAACCCACAAGCCACTCAATCCAGATCCAACCTCTTCTGCTGATCACCATGCTGCTGTCAATGTCAATGGAGCTTCTTCTTCCAAGAACAATCAACATCACGGCGGGACCAGCTCAAACCCTAACCCTAAAAGTCCAAATACGTCTTCATCACTTGAGGAAGCAGCAGCTCCCGTTGCTAAGGAAAATGGGTACCTTGTTAGCAATGATGATTTGGGGGTTATTGTCCATGGAGCGGCCGGCTATGGAAATGTTATGACCTCCAATGACTCTGATGCCTCTGCAGCAGGAATGGGAGCTTTGAGAAGCAACCTACTGCTTGGAAATGAGGAGGATGAAGACATGAACTGTTGCACAGACGATGTCTTCTCTTCGTTTCTGAACTCTCTGATCAATGAGGATCCGTTTGCTGCTGCAGCAAGCCAGCACCAGTTGCAGCCATTACAAGTAATGCAACAGCCTAATGGGATTGCCCAACCTGCTGCTGAATCTTCTGCACCAGCTTTCGGTGGTTGGGAATCTGCGGTGCTCATGTCTTCCGCTTTCATCCAGAATGATCCACACAGGGTTAATGTCAATCAGACGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

347

Amino Acids

37.02

Weight (kDa)

7.68

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	41 - 88	7.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	44 - 100	1.7e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	99 - 139	5.4e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	99 - 142	3.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13540
fragaria_vesca	FvH4_3g45450
malus_domestica	MD11G1006500.v1.1 MD11G1007500.v1.1
prunus_persica	Prupe.6G004700_v2.0.a1
pyrus_communis	pycom11g00510
rosa_laevigata	RLG00000037022
rosa_multiflora	Rmu_co8442277.1_g000001 Rmu_sc0011792.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001240
rosa_rugosa	Rorug05G0483600
rosa_samantha	Rh5AG533000 Rh5BG560300 Rh5CG583000 Rh5DG569600
rosa_wichuraiana	Rw5G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	937
Acc65I	GGTACC	1 cut(s)	642
AccB1I	GGYRCC	2 cut(s)	32, 642
AccBSI	CCGCTC	1 cut(s)	686
AccII	CGCG	2 cut(s)	210, 282
AclWI	GGATC	5 cut(s)	440, 470, 845, 858, 1001
AcoI	YGGCCR	2 cut(s)	283, 687
AcuI	CTGAAG	2 cut(s)	137, 159
AcyI	GRCGYC	2 cut(s)	33, 92
AfaI	GTAC	2 cut(s)	379, 644
AfiI	CCNNNNNNNGG	2 cut(s)	685, 956
AjnI	CCWGG	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	8 cut(s)	151, 237, 427, 524, 564, 620, 749, 953
AluI	AGCT	8 cut(s)	151, 237, 427, 524, 564, 620, 749, 953
Alw21I	GWGCWC	2 cut(s)	153, 981
AlwI	GGATC	5 cut(s)	440, 470, 845, 858, 1001
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	4 cut(s)	184, 214, 283, 687
Asp718I	GGTACC	1 cut(s)	642
AspLEI	GCGC	4 cut(s)	35, 210, 212, 282
AspS9I	GGNCC	4 cut(s)	125, 184, 348, 558
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	404, 488
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	3 cut(s)	125, 348, 558
BamHI	GGATCC	1 cut(s)	850
BanI	GGYRCC	2 cut(s)	32, 642
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	6 cut(s)	12, 69, 588, 795, 808, 978
Bbv12I	GWGCWC	2 cut(s)	153, 981
BccI	CCATC	2 cut(s)	19, 339
BceAI	ACGGC	2 cut(s)	79, 568
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	1 cut(s)	130
BclI	TGATCA	2 cut(s)	493, 840
BcnI	CCSGG	1 cut(s)	372
BfmI	CTRYAG	2 cut(s)	732, 864
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	937
BglII	AGATCT	1 cut(s)	307
Bme1390I	CCNGG	2 cut(s)	130, 372
Bme18I	GGWCC	3 cut(s)	125, 348, 558
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	4 cut(s)	125, 184, 348, 558
BmiI	GGNNCC	7 cut(s)	8, 34, 127, 350, 559, 644, 852
BmrFI	CCNGG	2 cut(s)	130, 372
BmsI	GCATC	1 cut(s)	715
BpiI	GAAGAC	6 cut(s)	12, 69, 588, 795, 808, 978
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	372
BsaHI	GRCGYC	2 cut(s)	33, 92
BsaJI	CCNNGG	5 cut(s)	27, 128, 334, 371, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	685, 956
Bse118I	RCCGGY	3 cut(s)	186, 212, 689
Bse1I	ACTGG	2 cut(s)	407, 880
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	5 cut(s)	27, 128, 334, 371, 679
BseGI	GGATG	5 cut(s)	23, 258, 312, 790, 996
BseLI	CCNNNNNNNGG	2 cut(s)	685, 956
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	1 cut(s)	430
BseNI	ACTGG	2 cut(s)	407, 880
BsePI	GCGCGC	1 cut(s)	208
BseRI	GAGGAG	3 cut(s)	209, 323, 794
BseX3I	CGGCCG	1 cut(s)	687
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	930
Bsh1236I	CGCG	2 cut(s)	210, 282
Bsh1285I	CGRYCG	1 cut(s)	690
BshFI	GGCC	4 cut(s)	186, 216, 285, 689
BshNI	GGYRCC	2 cut(s)	32, 642
BsiEI	CGRYCG	1 cut(s)	690
BsiHKAI	GWGCWC	2 cut(s)	153, 981
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	4 cut(s)	187, 213, 371, 690
BslFI	GGGAC	3 cut(s)	111, 334, 571
BslI	CCNNNNNNNGG	2 cut(s)	685, 956
BsmFI	GGGAC	3 cut(s)	111, 334, 571
BsnI	GGCC	4 cut(s)	186, 216, 285, 689
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	153, 981
Bsp143I	GATC	8 cut(s)	288, 307, 445, 475, 493, 840, 850, 1006
Bsp19I	CCATGG	1 cut(s)	679
BspANI	GGCC	4 cut(s)	186, 216, 285, 689
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	2 cut(s)	210, 282
BspLI	GGNNCC	7 cut(s)	8, 34, 127, 350, 559, 644, 852
BspMAI	CTGCAG	2 cut(s)	736, 868
BspMI	ACCTGC	1 cut(s)	937
BspPI	GGATC	5 cut(s)	440, 470, 845, 858, 1001
BspT107I	GGYRCC	2 cut(s)	32, 642
BsrBI	CCGCTC	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	661
BsrFI	RCCGGY	3 cut(s)	186, 212, 689
BsrI	ACTGG	2 cut(s)	407, 880
BssAI	RCCGGY	3 cut(s)	186, 212, 689
BssECI	CCNNGG	5 cut(s)	27, 128, 334, 371, 679
BssHII	GCGCGC	1 cut(s)	208
BssMI	GATC	8 cut(s)	288, 307, 445, 475, 493, 840, 850, 1006
BssNI	GRCGYC	2 cut(s)	33, 92
BssT1I	CCWWGG	1 cut(s)	679
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	800
Bst6I	CTCTTC	3 cut(s)	113, 490, 826
BstACI	GRCGYC	2 cut(s)	33, 92
BstAPI	GCANNNNNTGC	2 cut(s)	237, 883
BstC8I	GCNNGC	5 cut(s)	210, 214, 691, 871, 875
BstDEI	CTNAG	3 cut(s)	154, 416, 630
BstDSI	CCRYGG	1 cut(s)	679
BstF5I	GGATG	5 cut(s)	23, 258, 312, 790, 996
BstFNI	CGCG	2 cut(s)	210, 282
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	4 cut(s)	35, 210, 212, 282
BstKTI	GATC	8 cut(s)	291, 310, 448, 478, 496, 843, 853, 1009
BstMBI	GATC	8 cut(s)	288, 307, 445, 475, 493, 840, 850, 1006
BstMCI	CGRYCG	1 cut(s)	690
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	128, 370
BstSFI	CTRYAG	2 cut(s)	732, 864
BstUI	CGCG	2 cut(s)	210, 282
BstV2I	GAAGAC	6 cut(s)	12, 69, 588, 795, 808, 978
BstX2I	RGATCY	4 cut(s)	307, 445, 475, 850
BstYI	RGATCY	4 cut(s)	307, 445, 475, 850
BstZI	CGGCCG	1 cut(s)	687
BsuRI	GGCC	4 cut(s)	186, 216, 285, 689
BtgI	CCRYGG	1 cut(s)	679
BtsCI	GGATG	5 cut(s)	23, 258, 312, 790, 996
BveI	ACCTGC	1 cut(s)	937
Cac8I	GCNNGC	5 cut(s)	210, 214, 691, 871, 875
CfoI	GCGC	4 cut(s)	35, 210, 212, 282
Cfr10I	RCCGGY	3 cut(s)	186, 212, 689
Cfr13I	GGNCC	4 cut(s)	125, 184, 348, 558
CseI	GACGC	2 cut(s)	91, 100
Csp6I	GTAC	2 cut(s)	378, 643
CviAII	CATG	4 cut(s)	500, 680, 793, 982
CviQI	GTAC	2 cut(s)	378, 643
DdeI	CTNAG	3 cut(s)	154, 416, 630
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	8 cut(s)	290, 309, 447, 477, 495, 842, 852, 1008
DpnII	GATC	8 cut(s)	288, 307, 445, 475, 493, 840, 850, 1006
EaeI	YGGCCR	2 cut(s)	283, 687
EagI	CGGCCG	1 cut(s)	687
Eam1104I	CTCTTC	3 cut(s)	113, 490, 826
EarI	CTCTTC	3 cut(s)	113, 490, 826
EciI	GGCGGA	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	3 cut(s)	125, 348, 558
Eco52I	CGGCCG	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	137, 159
Eco88I	CYCGRG	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	4 cut(s)	503, 683, 796, 985
FaiI	YATR	7 cut(s)	443, 501, 681, 696, 707, 794, 983
FaqI	GGGAC	3 cut(s)	111, 334, 571
FatI	CATG	4 cut(s)	499, 679, 792, 981
FauI	CCCGC	1 cut(s)	548
FbaI	TGATCA	2 cut(s)	493, 840
FokI	GGATG	5 cut(s)	10, 265, 299, 797, 983
FriOI	GRGCYC	1 cut(s)	153
GlaI	GCGC	4 cut(s)	34, 209, 211, 281
GsaI	CCCAGC	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	4 cut(s)	186, 216, 285, 689
HapII	CCGG	4 cut(s)	187, 213, 371, 690
HgaI	GACGC	2 cut(s)	91, 100
HhaI	GCGC	4 cut(s)	35, 210, 212, 282
Hin1I	GRCGYC	2 cut(s)	33, 92
Hin1II	CATG	4 cut(s)	503, 683, 796, 985
Hin6I	GCGC	4 cut(s)	33, 208, 210, 280
HinP1I	GCGC	4 cut(s)	33, 208, 210, 280
HinfI	GANTC	6 cut(s)	133, 330, 367, 719, 938, 968
HpaII	CCGG	4 cut(s)	187, 213, 371, 690
HphI	GGTGA	2 cut(s)	404, 488
Hpy188I	TCNGA	6 cut(s)	117, 298, 724, 831, 840, 1032
Hpy188III	TCNNGA	5 cut(s)	137, 169, 202, 473, 1000
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	170, 279
HpyCH4III	ACNGT	1 cut(s)	800
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	6 cut(s)	734, 804, 866, 886, 904, 947
HpyF3I	CTNAG	3 cut(s)	154, 416, 630
HpySE526I	ACGT	1 cut(s)	593
Hsp92I	GRCGYC	2 cut(s)	33, 92
Hsp92II	CATG	4 cut(s)	503, 683, 796, 985
HspAI	GCGC	4 cut(s)	33, 208, 210, 280
KasI	GGCGCC	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	646
KroI	GCCGGC	2 cut(s)	212, 689
KroNI	GCCGGC	2 cut(s)	214, 691
Ksp22I	TGATCA	2 cut(s)	493, 840
Kzo9I	GATC	8 cut(s)	288, 307, 445, 475, 493, 840, 850, 1006
LmnI	GCTCC	4 cut(s)	521, 625, 683, 746
LweI	GCATC	1 cut(s)	715
MaeII	ACGT	1 cut(s)	593
MalI	GATC	8 cut(s)	290, 309, 447, 477, 495, 842, 852, 1008
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	8 cut(s)	288, 307, 445, 475, 493, 840, 850, 1006
MflI	RGATCY	4 cut(s)	307, 445, 475, 850
MhlI	GDGCHC	2 cut(s)	153, 981
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	3 cut(s)	127, 324, 713
MmeI	TCCRAC	1 cut(s)	503
MroNI	GCCGGC	2 cut(s)	212, 689
MseI	TTAA	1 cut(s)	1020
MspA1I	CMGCKG	2 cut(s)	225, 249
MspI	CCGG	4 cut(s)	187, 213, 371, 690
MspR9I	CCNGG	2 cut(s)	130, 372
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	2 cut(s)	210, 282
NaeI	GCCGGC	2 cut(s)	214, 691
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	372
NcoI	CCATGG	1 cut(s)	679
NdeII	GATC	8 cut(s)	288, 307, 445, 475, 493, 840, 850, 1006
NgoMIV	GCCGGC	2 cut(s)	212, 689
NlaIII	CATG	4 cut(s)	503, 683, 796, 985
NlaIV	GGNNCC	7 cut(s)	8, 34, 127, 350, 559, 644, 852
NmeAIII	GCCGAG	1 cut(s)	315
PauI	GCGCGC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PdiI	GCCGGC	2 cut(s)	214, 691
PfeI	GAWTC	3 cut(s)	367, 938, 968
PflFI	GACNNNGTC	1 cut(s)	812
PleI	GAGTC	3 cut(s)	127, 324, 713
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	3 cut(s)	127, 324, 713
PpuMI	RGGWCCY	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	7 cut(s)	8, 34, 127, 350, 559, 644, 852
PspPI	GGNCC	4 cut(s)	125, 184, 348, 558
PspPPI	RGGWCCY	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	736, 868
PsuI	RGATCY	4 cut(s)	307, 445, 475, 850
PsyI	GACNNNGTC	1 cut(s)	812
PteI	GCGCGC	1 cut(s)	208
RsaI	GTAC	2 cut(s)	379, 644
RsaNI	GTAC	2 cut(s)	378, 643
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	1020
Sau3AI	GATC	8 cut(s)	288, 307, 445, 475, 493, 840, 850, 1006
Sau96I	GGNCC	4 cut(s)	125, 184, 348, 558
SchI	GAGTC	3 cut(s)	127, 324, 713
ScrFI	CCNGG	2 cut(s)	130, 372
SduI	GDGCHC	2 cut(s)	153, 981
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	2 cut(s)	732, 864
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	3 cut(s)	125, 348, 558
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SspDI	GGCGCC	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	128, 370
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	1 cut(s)	800
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	1 cut(s)	83
TauI	GCSGC	4 cut(s)	231, 243, 285, 689
TfiI	GAWTC	3 cut(s)	367, 938, 968
Tru1I	TTAA	1 cut(s)	1020
Tru9I	TTAA	1 cut(s)	1020
TspDTI	ATGAA	7 cut(s)	12, 269, 315, 588, 801, 809, 985
TspGWI	ACGGA	2 cut(s)	254, 843
Tth111I	GACNNNGTC	1 cut(s)	812
VpaK11BI	GGWCC	3 cut(s)	125, 348, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.