Rmu_sc0011792.1_g000005
MYB Family

transcription repressor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011792.1
Physical Location & Seq
Reverse (-)
25524 .. 26672
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011792.1_g000005.1.cds

Sequence Viewer

Length: 1059 bp
atgaggaacccatcttcgacctcatcttcctccaaaggaaaatcatcatcatcagcagcagcagcagctgcacccaaaacagcagcagtatcgtcttcctcgagcaagacgccgtgctgcgtcaaggtgggtctgaagagaggtccctggactcccgaggaagatgagctcttagctaattacatcaagaaagaaggcgagggccggtggagaaccctcccgaagcgcgccggcctcctccgctgcggcaagagctgccgtctccgctggatgaactacctccgaccttccgtcaagcggggccagatcgccgcagatgaagaagatctcatcctccgcctccaccgcctcctcggcaatagatggtctctgatagctgggaggattccggggcgtacagacaatgagataaagaactactggaacactcacctgagcaagaagctgatcagtcagggcatagatccaagaacccacaagccactcaatccagatacctcttctgctgaccatgctgctgtcaacaataatggagcagctgcttcgtcatccaagaccaatcagcatcgcggaggcacgagctcaaaccctagccctaaaagtccaattacttcttcatcacctgaggaagcagctcccagtgcgagggaaaatgggtaccatgttaccaatgatgatgatctgggagctatagtccacggagccaacggctacggtaatgttatgacctccaatgactctaatgggtctgcagcaggaatgggaggtctgagaagcaacctactaattggaaatgaggaggatgaagacatgaactgttgcaccgacgacgtcttctcttcgtttttgaactctctgatcaatgaggatccgtttgctgctgcagcagcaggccagcaccattcgcagccgttacaaggaatgcaacatcctaatgggattgcgccacctgctgattcttctgctcaggctttcggtggctgggaatctgcggtgctcatgtcttcctctttcatccagaacgattctcacagggttaatgtcgatcaaacacaatag

Protein Analysis

352

Amino Acids

37.49

Weight (kDa)

8.19

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13540
fragaria_vesca FvH4_3g45450
malus_domestica MD11G1006500.v1.1 MD11G1007500.v1.1
prunus_persica Prupe.6G004700_v2.0.a1
pyrus_communis pycom11g00510
rosa_laevigata RLG00000037022
rosa_multiflora Rmu_co8442277.1_g000001 Rmu_sc0011792.1_g000005
rosa_roxburghii Rroxscaffold_1G00001240
rosa_rugosa Rorug05G0483600
rosa_samantha Rh5AG533000 Rh5BG560300 Rh5CG583000 Rh5DG569600
rosa_wichuraiana Rw5G049990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 958
AatII GACGTC 1 cut(s) 834
Acc36I ACCTGC 1 cut(s) 958
Acc65I GGTACC 1 cut(s) 657
AccB1I GGYRCC 1 cut(s) 657
AccII CGCG 2 cut(s) 228, 570
AciI CCGC 9 cut(s) 241, 246, 265, 298, 312, 337, 346, 570, 992
AclWI GGATC 3 cut(s) 458, 863, 876
AcuI CTGAAG 1 cut(s) 155
AcyI GRCGYC 2 cut(s) 110, 831
AfaI GTAC 2 cut(s) 397, 659
AfiI CCNNNNNNNGG 3 cut(s) 297, 645, 917
AgsI TTSAA 1 cut(s) 850
AhdI GACNNNNNGTC 1 cut(s) 290
AjnI CCWGG 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 598, 630
Alw21I GWGCWC 3 cut(s) 171, 584, 999
Alw26I GTCTC 2 cut(s) 266, 372
AlwI GGATC 3 cut(s) 458, 863, 876
AlwNI CAGNNNCTG 1 cut(s) 68
Ama87I CYCGRG 2 cut(s) 100, 155
AoxI GGCC 4 cut(s) 202, 232, 301, 892
Asp718I GGTACC 1 cut(s) 657
AspLEI GCGC 3 cut(s) 228, 230, 946
AspS9I GGNCC 3 cut(s) 143, 202, 301
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 2 cut(s) 422, 612
AvaI CYCGRG 2 cut(s) 100, 155
AvaII GGWCC 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 624
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 657
BanII GRGCYC 2 cut(s) 171, 584
BauI CACGAG 1 cut(s) 577
BbsI GAAGAC 4 cut(s) 87, 813, 826, 996
Bbv12I GWGCWC 3 cut(s) 171, 584, 999
BccI CCATC 2 cut(s) 19, 357
BceAI ACGGC 4 cut(s) 97, 243, 724, 895
BcgI CGANNNNNNTGC 4 cut(s) 72, 106, 525, 559
BciT130I CCWGG 1 cut(s) 148
BclI TGATCA 2 cut(s) 447, 858
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 266, 372
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 3 cut(s) 690, 750, 882
BfuAI ACCTGC 1 cut(s) 958
BglI GCCNNNNNGGC 1 cut(s) 354
BglII AGATCT 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 148, 390
Bme18I GGWCC 1 cut(s) 143
BmeRI GACNNNNNGTC 1 cut(s) 290
BmeT110I CYCGRG 2 cut(s) 100, 155
BmgT120I GGNCC 3 cut(s) 143, 202, 301
BmiI GGNNCC 6 cut(s) 8, 145, 302, 659, 703, 870
BmrFI CCNGG 2 cut(s) 148, 390
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 633
BpiI GAAGAC 4 cut(s) 87, 813, 826, 996
Bpu10I CCTNAGC 2 cut(s) 434, 966
BpuMI CCSGG 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 678
BsaHI GRCGYC 2 cut(s) 110, 831
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 5 cut(s) 146, 156, 352, 389, 697
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 3 cut(s) 297, 645, 917
Bse118I RCCGGY 2 cut(s) 204, 230
Bse1I ACTGG 2 cut(s) 425, 639
Bse21I CCTNAGG 1 cut(s) 624
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 5 cut(s) 146, 156, 352, 389, 697
BseGI GGATG 6 cut(s) 276, 330, 548, 808, 928, 1014
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 3 cut(s) 297, 645, 917
BseMII CTCAG 4 cut(s) 425, 615, 761, 980
BseNI ACTGG 2 cut(s) 425, 639
BsePI GCGCGC 1 cut(s) 226
BseRI GAGGAG 3 cut(s) 227, 341, 812
BseYI CCCAGC 2 cut(s) 377, 981
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 2 cut(s) 228, 570
BshFI GGCC 4 cut(s) 204, 234, 303, 894
BshNI GGYRCC 1 cut(s) 657
BsiHKAI GWGCWC 3 cut(s) 171, 584, 999
BsiHKCI CYCGRG 2 cut(s) 100, 155
BsiSI CCGG 3 cut(s) 205, 231, 389
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 3 cut(s) 297, 645, 917
BsmAI GTCTC 2 cut(s) 266, 372
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 927
BsnI GGCC 4 cut(s) 204, 234, 303, 894
Bso31I GGTCTC 1 cut(s) 372
BsoBI CYCGRG 2 cut(s) 100, 155
Bsp1286I GDGCHC 3 cut(s) 171, 584, 999
Bsp143I GATC 8 cut(s) 306, 325, 447, 463, 679, 858, 868, 1045
BspACI CCGC 9 cut(s) 241, 246, 265, 298, 312, 337, 346, 570, 992
BspANI GGCC 4 cut(s) 204, 234, 303, 894
BspCNI CTCAG 4 cut(s) 426, 616, 762, 979
BspFNI CGCG 2 cut(s) 228, 570
BspLI GGNNCC 6 cut(s) 8, 145, 302, 659, 703, 870
BspMAI CTGCAG 2 cut(s) 754, 886
BspMI ACCTGC 1 cut(s) 958
BspPI GGATC 3 cut(s) 458, 863, 876
BspT107I GGYRCC 1 cut(s) 657
BspTNI GGTCTC 1 cut(s) 372
BsrFI RCCGGY 2 cut(s) 204, 230
BsrI ACTGG 2 cut(s) 425, 639
BssAI RCCGGY 2 cut(s) 204, 230
BssECI CCNNGG 5 cut(s) 146, 156, 352, 389, 697
BssHII GCGCGC 1 cut(s) 226
BssMI GATC 8 cut(s) 306, 325, 447, 463, 679, 858, 868, 1045
BssNI GRCGYC 2 cut(s) 110, 831
BssSI CACGAG 1 cut(s) 577
Bst2BI CACGAG 1 cut(s) 577
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 716, 818
Bst6I CTCTTC 3 cut(s) 131, 505, 844
BstACI GRCGYC 2 cut(s) 110, 831
BstAPI GCANNNNNTGC 2 cut(s) 68, 255
BstC8I GCNNGC 4 cut(s) 228, 232, 892, 896
BstDEI CTNAG 5 cut(s) 172, 434, 624, 770, 966
BstDSI CCRYGG 1 cut(s) 697
BstF5I GGATG 6 cut(s) 276, 330, 548, 808, 928, 1014
BstFNI CGCG 2 cut(s) 228, 570
BstHHI GCGC 3 cut(s) 228, 230, 946
BstKTI GATC 8 cut(s) 309, 328, 450, 466, 682, 861, 871, 1048
BstMAI GTCTC 2 cut(s) 266, 372
BstMBI GATC 8 cut(s) 306, 325, 447, 463, 679, 858, 868, 1045
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 2 cut(s) 146, 388
BstSFI CTRYAG 3 cut(s) 690, 750, 882
BstUI CGCG 2 cut(s) 228, 570
BstV2I GAAGAC 4 cut(s) 87, 813, 826, 996
BstX2I RGATCY 3 cut(s) 325, 463, 868
BstYI RGATCY 3 cut(s) 325, 463, 868
Bsu36I CCTNAGG 1 cut(s) 624
BsuRI GGCC 4 cut(s) 204, 234, 303, 894
BtgI CCRYGG 1 cut(s) 697
BtgZI GCGATG 1 cut(s) 551
BtsCI GGATG 6 cut(s) 276, 330, 548, 808, 928, 1014
BtsIMutI CAGTG 1 cut(s) 646
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 4 cut(s) 228, 232, 892, 896
CaiI CAGNNNCTG 1 cut(s) 68
CfoI GCGC 3 cut(s) 228, 230, 946
Cfr10I RCCGGY 2 cut(s) 204, 230
Cfr13I GGNCC 3 cut(s) 143, 202, 301
CseI GACGC 2 cut(s) 109, 118
Csp6I GTAC 2 cut(s) 396, 658
CviAII CATG 4 cut(s) 512, 662, 811, 1000
CviQI GTAC 2 cut(s) 396, 658
DdeI CTNAG 5 cut(s) 172, 434, 624, 770, 966
DpnI GATC 8 cut(s) 308, 327, 449, 465, 681, 860, 870, 1047
DpnII GATC 8 cut(s) 306, 325, 447, 463, 679, 858, 868, 1045
DriI GACNNNNNGTC 1 cut(s) 290
Eam1104I CTCTTC 3 cut(s) 131, 505, 844
Eam1105I GACNNNNNGTC 1 cut(s) 290
EarI CTCTTC 3 cut(s) 131, 505, 844
EciI GGCGGA 1 cut(s) 326
Ecl136II GAGCTC 2 cut(s) 169, 582
Eco24I GRGCYC 2 cut(s) 171, 584
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 2 cut(s) 169, 582
Eco57I CTGAAG 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 624
Eco88I CYCGRG 2 cut(s) 100, 155
EcoICRI GAGCTC 2 cut(s) 169, 582
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 146
EcoT38I GRGCYC 2 cut(s) 171, 584
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 4 cut(s) 515, 665, 814, 1003
FaiI YATR 7 cut(s) 461, 513, 663, 692, 725, 812, 1001
FaqI GGGAC 1 cut(s) 129
FatI CATG 4 cut(s) 511, 661, 810, 999
FauI CCCGC 1 cut(s) 291
FbaI TGATCA 2 cut(s) 447, 858
FokI GGATG 6 cut(s) 283, 317, 535, 815, 915, 1001
FriOI GRGCYC 2 cut(s) 171, 584
FspBI CTAG 1 cut(s) 591
GlaI GCGC 3 cut(s) 227, 229, 945
GsaI CCCAGC 2 cut(s) 381, 985
HaeIII GGCC 4 cut(s) 204, 234, 303, 894
HapII CCGG 3 cut(s) 205, 231, 389
HgaI GACGC 2 cut(s) 109, 118
HhaI GCGC 3 cut(s) 228, 230, 946
Hin1I GRCGYC 2 cut(s) 110, 831
Hin1II CATG 4 cut(s) 515, 665, 814, 1003
Hin6I GCGC 3 cut(s) 226, 228, 944
HinP1I GCGC 3 cut(s) 226, 228, 944
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 6 cut(s) 151, 385, 737, 956, 986, 1025
HpaII CCGG 3 cut(s) 205, 231, 389
HphI GGTGA 2 cut(s) 422, 612
Hpy166II GTNNAC 2 cut(s) 523, 697
Hpy188I TCNGA 5 cut(s) 135, 284, 372, 771, 858
Hpy188III TCNNGA 5 cut(s) 155, 187, 220, 491, 1018
Hpy8I GTNNAC 2 cut(s) 523, 697
Hpy99I CGWCG 2 cut(s) 830, 833
HpyAV CCTTC 2 cut(s) 188, 297
HpyCH4III ACNGT 2 cut(s) 716, 818
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 5 cut(s) 71, 752, 822, 884, 925
HpyF3I CTNAG 5 cut(s) 172, 434, 624, 770, 966
HpySE526I ACGT 1 cut(s) 831
Hsp92I GRCGYC 2 cut(s) 110, 831
Hsp92II CATG 4 cut(s) 515, 665, 814, 1003
HspAI GCGC 3 cut(s) 226, 228, 944
KpnI GGTACC 1 cut(s) 661
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
Ksp22I TGATCA 2 cut(s) 447, 858
Kzo9I GATC 8 cut(s) 306, 325, 447, 463, 679, 858, 868, 1045
LmnI GCTCC 4 cut(s) 533, 640, 686, 701
LweI GCATC 1 cut(s) 574
MaeI CTAG 1 cut(s) 591
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 2 cut(s) 664, 912
MalI GATC 8 cut(s) 308, 327, 449, 465, 681, 860, 870, 1047
MboI GATC 8 cut(s) 306, 325, 447, 463, 679, 858, 868, 1045
MflI RGATCY 3 cut(s) 325, 463, 868
MhlI GDGCHC 3 cut(s) 171, 584, 999
MluCI AATT 3 cut(s) 178, 606, 786
MlyI GAGTC 2 cut(s) 145, 731
MmeI TCCRAC 1 cut(s) 307
MroNI GCCGGC 1 cut(s) 230
MseI TTAA 1 cut(s) 1038
MslI CAYNNNNRTG 1 cut(s) 933
MspA1I CMGCKG 4 cut(s) 68, 243, 267, 539
MspI CCGG 3 cut(s) 205, 231, 389
MspR9I CCNGG 2 cut(s) 148, 390
Mva1269I GAATGC 1 cut(s) 927
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 2 cut(s) 228, 570
NaeI GCCGGC 1 cut(s) 232
NciI CCSGG 1 cut(s) 390
NdeII GATC 8 cut(s) 306, 325, 447, 463, 679, 858, 868, 1045
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 4 cut(s) 515, 665, 814, 1003
NlaIV GGNNCC 6 cut(s) 8, 145, 302, 659, 703, 870
NmeAIII GCCGAG 1 cut(s) 333
PaeR7I CTCGAG 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 958
PauI GCGCGC 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PctI GAATGC 1 cut(s) 927
PdiI GCCGGC 1 cut(s) 232
PfeI GAWTC 4 cut(s) 385, 956, 986, 1025
PflFI GACNNNGTC 1 cut(s) 830
PleI GAGTC 2 cut(s) 145, 731
PpsI GAGTC 2 cut(s) 145, 731
PpuMI RGGWCCY 1 cut(s) 143
Psp124BI GAGCTC 2 cut(s) 171, 584
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 146
PspFI CCCAGC 2 cut(s) 377, 981
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 6 cut(s) 8, 145, 302, 659, 703, 870
PspPI GGNCC 3 cut(s) 143, 202, 301
PspPPI RGGWCCY 1 cut(s) 143
PspXI VCTCGAGB 1 cut(s) 100
PstI CTGCAG 2 cut(s) 754, 886
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 3 cut(s) 325, 463, 868
PsyI GACNNNGTC 1 cut(s) 830
PteI GCGCGC 1 cut(s) 226
PvuII CAGCTG 2 cut(s) 68, 539
RsaI GTAC 2 cut(s) 397, 659
RsaNI GTAC 2 cut(s) 396, 658
RseI CAYNNNNRTG 1 cut(s) 933
SacI GAGCTC 2 cut(s) 171, 584
SaqAI TTAA 1 cut(s) 1038
Sau3AI GATC 8 cut(s) 306, 325, 447, 463, 679, 858, 868, 1045
Sau96I GGNCC 3 cut(s) 143, 202, 301
SchI GAGTC 2 cut(s) 145, 731
ScrFI CCNGG 2 cut(s) 148, 390
SduI GDGCHC 3 cut(s) 171, 584, 999
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 3 cut(s) 690, 750, 882
Sfr274I CTCGAG 1 cut(s) 100
SinI GGWCC 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 933
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 3 cut(s) 178, 606, 786
SsiI CCGC 9 cut(s) 241, 246, 265, 298, 312, 337, 346, 570, 992
SspMI CTAG 1 cut(s) 591
SstI GAGCTC 2 cut(s) 171, 584
StyD4I CCNGG 2 cut(s) 146, 388
TaaI ACNGT 2 cut(s) 716, 818
TaiI ACGT 1 cut(s) 834
TaqI TCGA 3 cut(s) 17, 101, 1044
TasI AATT 3 cut(s) 178, 606, 786
TauI GCSGC 2 cut(s) 249, 314
TfiI GAWTC 4 cut(s) 385, 956, 986, 1025
Tru1I TTAA 1 cut(s) 1038
Tru9I TTAA 1 cut(s) 1038
TscAI CASTG 1 cut(s) 646
TspDTI ATGAA 6 cut(s) 287, 333, 606, 819, 827, 1003
TspGWI ACGGA 3 cut(s) 280, 714, 861
TspRI CASTG 1 cut(s) 646
Tth111I GACNNNGTC 1 cut(s) 830
VpaK11BI GGWCC 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 100
XspI CTAG 1 cut(s) 591
ZraI GACGTC 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.