Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015126

Physical Location & Seq

Genomic Coordinates Forward (+)

465388 .. 467032

Gene Structure 1645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G004700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAGAAACCCATCGTCATCGTCATCGTCATCGTCGTCAAAAGCGGCGGCAGCTGCAGCGACAGCAACTTCAATACCAACGAAAATAACATCGTCGTCGTCGAGCAAGGCGGCGGGGACCAGTGGTGGGAGCAAGACGCCGTGTTGTATCAAGGTGGGTTTGAAGAGAGGGCCGTGGACGCCCGAAGAGGACGAGCTCTTGTCCAATTACATCAATAAAGAAGGTGAGGGCCGATGGCGGACCCTACCCAAGAGGGCGGGGCTGCTCCGCTGCGGCAAGAGTTGCCGCCTCCGCTGGATGAACTACCTCCGCCCTTCTGTCAAGCGCGGCCAGATCGCCCCCGACGAAGAAGATCTCATCCTTCGCCTCCATCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCTGGGAGGATCCCAGGGCGTACGGACAATGAGATAAAGAACTACTGGAACACACACCTGAGCAAGAAGCTGATCAGCCAAGGCATAGATCCCAGAACCCACAAGCCTCTAAATCCAGATATTCACTCCTCGGCTACTGTTGCTGCTGCTGATATGGACAGCAACATTAACAAAGCAGCAACAGTTTCTTCTTCCAAAACCAATCGCTTCAGCTCAAACACCAACCCTAGTCCTCCTCCTACTTCTGAGCCTTCTGAGCCTGTGGCTCATCATCATGGGGCAGCTCCCAATACTAATGGCAATAATGGGAATATCGTCACAAATATTGCCAACAAGGAAAATGGGTACCTTGTTGATGATCAGGAGCTGGGCACCGTGGTCCATGGCTATGCAAACATGACGTCTTCTGATCACGCTTCTGCGGCGGCAATGGGAACTTTGAGCTTGAGAAGCAACGGCAGCAACAATGGAGGAGCACTACTTGGGGGGAATGAAGAGGACGATGATATGAATTGTTGCGCCGACGATGTCTTCTCTTCGTTCTTGAATTCATTAATCAACGAGGATCCATTTTCTGGCCAACACCATTTGCAACAACAAGTACTACTTCAGAACGGGAATAATGCACATAATGCAGCTGCTGCTGATGGTTCGGATCATCATGTTCCTTTGGTTTCTAGTGGTGCTGGTGCAACTGCGCCATCCACTTTTGGCTGGGAATCTGCTGTGCTCATGTCTTCTGCTTTTATCCAAAACGATCACCACAGGGTACTCAATGATCAAACGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

398

Amino Acids

42.23

Weight (kDa)

6.76

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13540
fragaria_vesca	FvH4_3g45450
malus_domestica	MD11G1006500.v1.1 MD11G1007500.v1.1
prunus_persica	Prupe.6G004700_v2.0.a1
pyrus_communis	pycom11g00510
rosa_laevigata	RLG00000037022
rosa_multiflora	Rmu_co8442277.1_g000001 Rmu_sc0011792.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001240
rosa_rugosa	Rorug05G0483600
rosa_samantha	Rh5AG533000 Rh5BG560300 Rh5CG583000 Rh5DG569600
rosa_wichuraiana	Rw5G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	806
Acc65I	GGTACC	1 cut(s)	747
AccB1I	GGYRCC	2 cut(s)	747, 773
AccB7I	CCANNNNNTGG	1 cut(s)	977
AccII	CGCG	1 cut(s)	327
AclWI	GGATC	6 cut(s)	406, 419, 485, 962, 975, 1065
AcoI	YGGCCR	2 cut(s)	328, 979
AcsI	RAATTY	1 cut(s)	949
AcuI	CTGAAG	2 cut(s)	595, 995
AcyI	GRCGYC	3 cut(s)	137, 179, 803
AfaI	GTAC	4 cut(s)	424, 749, 1005, 1173
AfiI	CCNNNNNNNGG	2 cut(s)	126, 977
AgeI	ACCGGT	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	72, 163, 949
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	9 cut(s)	53, 196, 404, 472, 615, 686, 769, 846, 1040
AluI	AGCT	9 cut(s)	53, 196, 404, 472, 615, 686, 769, 846, 1040
Alw21I	GWGCWC	3 cut(s)	198, 880, 1134
AlwI	GGATC	6 cut(s)	406, 419, 485, 962, 975, 1065
AlwNI	CAGNNNCTG	2 cut(s)	769, 1043
AoxI	GGCC	4 cut(s)	170, 229, 328, 979
ApoI	RAATTY	1 cut(s)	949
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
AseI	ATTAAT	1 cut(s)	956
AsiGI	ACCGGT	1 cut(s)	387
Asp718I	GGTACC	1 cut(s)	747
AspLEI	GCGC	3 cut(s)	327, 923, 1102
AspS9I	GGNCC	5 cut(s)	117, 170, 229, 240, 781
AsuHPI	GGTGA	2 cut(s)	236, 1154
AvaII	GGWCC	3 cut(s)	117, 240, 781
BaeGI	GKGCMC	1 cut(s)	776
BalI	TGGCCA	1 cut(s)	981
BamHI	GGATCC	2 cut(s)	411, 967
BanI	GGYRCC	2 cut(s)	747, 773
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	3 cut(s)	798, 925, 1131
Bbv12I	GWGCWC	3 cut(s)	198, 880, 1134
BccI	CCATC	5 cut(s)	19, 228, 378, 1043, 1111
BceAI	ACGGC	3 cut(s)	124, 157, 874
BciT130I	CCWGG	1 cut(s)	417
BclI	TGATCA	4 cut(s)	474, 760, 811, 1180
BfaI	CTAG	2 cut(s)	630, 1080
BfmI	CTRYAG	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	381
BglII	AGATCT	1 cut(s)	352
BmcAI	AGTACT	1 cut(s)	1005
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	3 cut(s)	117, 240, 781
BmgT120I	GGNCC	5 cut(s)	117, 170, 229, 240, 781
BmiI	GGNNCC	6 cut(s)	118, 242, 413, 749, 775, 969
BmrFI	CCNGG	1 cut(s)	417
BpiI	GAAGAC	3 cut(s)	798, 925, 1131
Bpu10I	CCTNAGC	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	868
BsaHI	GRCGYC	3 cut(s)	137, 179, 803
BsaJI	CCNNGG	8 cut(s)	173, 379, 415, 416, 481, 531, 777, 784
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 977
Bse118I	RCCGGY	1 cut(s)	387
Bse1I	ACTGG	2 cut(s)	120, 452
Bse3DI	GCAATG	1 cut(s)	837
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	8 cut(s)	173, 379, 415, 416, 481, 531, 777, 784
BseGI	GGATG	3 cut(s)	303, 357, 1103
BseLI	CCNNNNNNNGG	2 cut(s)	126, 977
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	3 cut(s)	452, 639, 648
BseNI	ACTGG	2 cut(s)	120, 452
BseRI	GAGGAG	4 cut(s)	368, 520, 627, 888
BseSI	GKGCMC	1 cut(s)	776
BseYI	CCCAGC	3 cut(s)	404, 769, 1116
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	4 cut(s)	172, 231, 330, 981
BshNI	GGYRCC	2 cut(s)	747, 773
BshTI	ACCGGT	1 cut(s)	387
BsiHKAI	GWGCWC	3 cut(s)	198, 880, 1134
BsiSI	CCGG	1 cut(s)	388
BsiWI	CGTACG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	126, 977
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	4 cut(s)	172, 231, 330, 981
Bsp1286I	GDGCHC	4 cut(s)	198, 776, 880, 1134
Bsp19I	CCATGG	1 cut(s)	784
BspANI	GGCC	4 cut(s)	172, 231, 330, 981
BspCNI	CTCAG	3 cut(s)	453, 640, 649
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	6 cut(s)	118, 242, 413, 749, 775, 969
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	6 cut(s)	406, 419, 485, 962, 975, 1065
BspT107I	GGYRCC	2 cut(s)	747, 773
BsrDI	GCAATG	1 cut(s)	837
BsrFI	RCCGGY	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	120, 452
BssAI	RCCGGY	1 cut(s)	387
BssECI	CCNNGG	8 cut(s)	173, 379, 415, 416, 481, 531, 777, 784
BssNI	GRCGYC	3 cut(s)	137, 179, 803
BssT1I	CCWWGG	2 cut(s)	481, 784
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	541, 586, 778
Bst6I	CTCTTC	4 cut(s)	158, 180, 891, 943
BstACI	GRCGYC	3 cut(s)	137, 179, 803
BstAPI	GCANNNNNTGC	3 cut(s)	282, 1034, 1043
BstDEI	CTNAG	3 cut(s)	461, 648, 657
BstDSI	CCRYGG	3 cut(s)	173, 777, 784
BstF5I	GGATG	3 cut(s)	303, 357, 1103
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	3 cut(s)	327, 923, 1102
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	776
BstUI	CGCG	1 cut(s)	327
BstV2I	GAAGAC	3 cut(s)	798, 925, 1131
BstX2I	RGATCY	4 cut(s)	352, 411, 490, 967
BstYI	RGATCY	4 cut(s)	352, 411, 490, 967
BsuRI	GGCC	4 cut(s)	172, 231, 330, 981
BtgI	CCRYGG	3 cut(s)	173, 777, 784
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	3 cut(s)	303, 357, 1103
BtsIMutI	CAGTG	1 cut(s)	127
CaiI	CAGNNNCTG	2 cut(s)	769, 1043
CfoI	GCGC	3 cut(s)	327, 923, 1102
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	5 cut(s)	117, 170, 229, 240, 781
CseI	GACGC	2 cut(s)	145, 187
Csp6I	GTAC	4 cut(s)	423, 748, 1004, 1172
CspAI	ACCGGT	1 cut(s)	387
CviAII	CATG	5 cut(s)	677, 785, 799, 1064, 1135
CviQI	GTAC	4 cut(s)	423, 748, 1004, 1172
DdeI	CTNAG	3 cut(s)	461, 648, 657
EaeI	YGGCCR	2 cut(s)	328, 979
Eam1104I	CTCTTC	4 cut(s)	158, 180, 891, 943
EarI	CTCTTC	4 cut(s)	158, 180, 891, 943
EciI	GGCGGA	2 cut(s)	253, 299
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	481, 784
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	117, 240, 781
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	595, 995
EcoICRI	GAGCTC	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	949
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	481, 784
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	481, 784
FaeI	CATG	5 cut(s)	680, 788, 802, 1067, 1138
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	5 cut(s)	676, 784, 798, 1063, 1134
FauI	CCCGC	2 cut(s)	106, 250
FbaI	TGATCA	4 cut(s)	474, 760, 811, 1180
FokI	GGATG	3 cut(s)	310, 344, 1090
FriOI	GRGCYC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	630, 1080
GlaI	GCGC	3 cut(s)	326, 922, 1101
GsaI	CCCAGC	3 cut(s)	408, 773, 1120
HaeIII	GGCC	4 cut(s)	172, 231, 330, 981
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	2 cut(s)	145, 187
HhaI	GCGC	3 cut(s)	327, 923, 1102
Hin1I	GRCGYC	3 cut(s)	137, 179, 803
Hin1II	CATG	5 cut(s)	680, 788, 802, 1067, 1138
Hin6I	GCGC	3 cut(s)	325, 921, 1100
HinP1I	GCGC	3 cut(s)	325, 921, 1100
HinfI	GANTC	1 cut(s)	1121
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	2 cut(s)	236, 1154
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	5 cut(s)	649, 658, 811, 1014, 1057
Hpy188III	TCNNGA	3 cut(s)	518, 764, 946
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	6 cut(s)	37, 97, 100, 103, 347, 929
HpyAV	CCTTC	4 cut(s)	215, 324, 371, 663
HpyCH4III	ACNGT	3 cut(s)	541, 586, 778
HpyCH4IV	ACGT	1 cut(s)	803
HpyCH4V	TGCA	6 cut(s)	56, 794, 994, 1028, 1037, 1094
HpyF3I	CTNAG	3 cut(s)	461, 648, 657
HpySE526I	ACGT	1 cut(s)	803
Hsp92I	GRCGYC	3 cut(s)	137, 179, 803
Hsp92II	CATG	5 cut(s)	680, 788, 802, 1067, 1138
HspAI	GCGC	3 cut(s)	325, 921, 1100
KpnI	GGTACC	1 cut(s)	751
Ksp22I	TGATCA	4 cut(s)	474, 760, 811, 1180
LmnI	GCTCC	5 cut(s)	129, 270, 691, 766, 875
MaeI	CTAG	2 cut(s)	630, 1080
MaeII	ACGT	1 cut(s)	803
MaeIII	GTNAC	1 cut(s)	718
MflI	RGATCY	4 cut(s)	352, 411, 490, 967
MhlI	GDGCHC	4 cut(s)	198, 776, 880, 1134
MlsI	TGGCCA	1 cut(s)	981
MluCI	AATT	3 cut(s)	205, 913, 949
MluNI	TGGCCA	1 cut(s)	981
Mox20I	TGGCCA	1 cut(s)	981
MscI	TGGCCA	1 cut(s)	981
MseI	TTAA	2 cut(s)	570, 956
MslI	CAYNNNNRTG	2 cut(s)	675, 789
Msp20I	TGGCCA	1 cut(s)	981
MspA1I	CMGCKG	4 cut(s)	53, 270, 294, 1040
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MvnI	CGCG	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	784
NlaIII	CATG	5 cut(s)	680, 788, 802, 1067, 1138
NlaIV	GGNNCC	6 cut(s)	118, 242, 413, 749, 775, 969
NmeAIII	GCCGAG	2 cut(s)	360, 512
NmuCI	GTSAC	1 cut(s)	718
PasI	CCCWGGG	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	3 cut(s)	32, 98, 342
PfeI	GAWTC	1 cut(s)	1121
Pfl23II	CGTACG	1 cut(s)	422
PflFI	GACNNNGTC	1 cut(s)	929
PflMI	CCANNNNNTGG	1 cut(s)	977
PinAI	ACCGGT	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	3 cut(s)	404, 769, 1116
PspGI	CCWGG	1 cut(s)	415
PspLI	CGTACG	1 cut(s)	422
PspN4I	GGNNCC	6 cut(s)	118, 242, 413, 749, 775, 969
PspPI	GGNCC	5 cut(s)	117, 170, 229, 240, 781
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	2 cut(s)	769, 1043
PsuI	RGATCY	4 cut(s)	352, 411, 490, 967
PsyI	GACNNNGTC	1 cut(s)	929
PvuII	CAGCTG	2 cut(s)	53, 1040
RsaI	GTAC	4 cut(s)	424, 749, 1005, 1173
RsaNI	GTAC	4 cut(s)	423, 748, 1004, 1172
RseI	CAYNNNNRTG	2 cut(s)	675, 789
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	570, 956
Sau96I	GGNCC	5 cut(s)	117, 170, 229, 240, 781
ScaI	AGTACT	1 cut(s)	1005
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	4 cut(s)	198, 776, 880, 1134
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	3 cut(s)	117, 240, 781
SmiMI	CAYNNNNRTG	2 cut(s)	675, 789
SmlI	CTYRAG	1 cut(s)	847
SmoI	CTYRAG	1 cut(s)	847
Sse9I	AATT	3 cut(s)	205, 913, 949
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	2 cut(s)	630, 1080
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	2 cut(s)	481, 784
TaaI	ACNGT	3 cut(s)	541, 586, 778
TaiI	ACGT	1 cut(s)	806
TaqI	TCGA	1 cut(s)	101
TasI	AATT	3 cut(s)	205, 913, 949
TatI	WGTACW	1 cut(s)	1003
TauI	GCSGC	8 cut(s)	47, 50, 113, 276, 288, 330, 827, 830
TfiI	GAWTC	1 cut(s)	1121
Tru1I	TTAA	2 cut(s)	570, 956
Tru9I	TTAA	2 cut(s)	570, 956
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	718
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	4 cut(s)	314, 909, 926, 942
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	929
Van91I	CCANNNNNTGG	1 cut(s)	977
VpaK11BI	GGWCC	3 cut(s)	117, 240, 781
VspI	ATTAAT	1 cut(s)	956
XapI	RAATTY	1 cut(s)	949
XspI	CTAG	2 cut(s)	630, 1080
ZraI	GACGTC	1 cut(s)	804
ZrmI	AGTACT	1 cut(s)	1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.