RLG00000037022
MYB Family

transcription repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015126
Physical Location & Seq
Reverse (-)
87620119 .. 87621257
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037022

Sequence Viewer

Length: 1053 bp
ATGAGGAACCCATCTTCGACCTCATCTTCCTCCAAAGGAAAATCATCAGCAGCAGCAGCAGCTGCACCCAAATCAGCAGCAGTATCGTCTTCCTCGAGCAAGACGCCGTGCTGCGTCAAGGTGGGTCTGAAGAGAGGTCCCTGGACTCCCGAGGAAGATGAGCTTTTAGCTAATTACATCAAGAAAGAAGGCGAGGGCCGGTGGCGAACCCTCCCGAAGCGCGCCGGCCTCCTCCGCTGCGGCAAGAGTTGCCGTCTCCGCTGGATGAACTACCTCCGACCTTCCGTCAAGCGGGGCCAGATCGCCGCAGATGAAGAAGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAATAGATGGTCTCTGATAGCTGGGAGGATTCCGGGGCGTACGGACAATGAGATAAAGAACTACTGGAACACTCACCTGAGCAAGAAGCTGATCAGTCAGGGCATAGATCCAAGAACCCACAAGCCACTCAATCCAGATACCTCTTCTGCTGACCATGCTGCTGTCAACAATAATGGAGCAGCTGCTTCTTCATCCAAGACCAATCAGCATCGCGGCGGCACGAGCTCAAACCCAAACCCTAAAAGTCCAGTTGCTTCTTCATCACCTGAGGAAGCAGCTCCCAGTGCTAGGGAAAATGGGTACCATGTTACCAATGATGATGATCTGGGGGCTATAGTCCACGGAGCCAACGGCTACGGTAATGTTATGACCTCCAATGACTCTAATGGGTCTGCAGCAGGAATGGGAGCTTTGAGAAGCAACCTACTAATTGGAAATGAGGAGGATGAAGACATGAACTGTTGCACCGACGACGTCTTCTCTTCGTTTCTGAACTCTCTGATCAATGAGGATCCGTTTGCTGCTGCTGCAGCAGGCCAGCACCATTCGCAGCCATTACAAGGAATGCAACATCCTAATGCGATTGCACCACCTGCTGATTCTTCTGCTCAGGCTTTCGGTGGCTGGGAATCTGCGGTGCTCATGTCTTCCGCTTTCATCCAGAATGATTCTCACAGGGTTAATGTCGATCAAACACAATAG

Protein Analysis

351

Amino Acids

37.29

Weight (kDa)

8.19

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 45 - 92 7.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 48 - 105 1e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 103 - 143 3.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 104 - 146 4e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13540
fragaria_vesca FvH4_3g45450
malus_domestica MD11G1006500.v1.1 MD11G1007500.v1.1
prunus_persica Prupe.6G004700_v2.0.a1
pyrus_communis pycom11g00510
rosa_laevigata RLG00000037022
rosa_multiflora Rmu_co8442277.1_g000001 Rmu_sc0011792.1_g000005
rosa_roxburghii Rroxscaffold_1G00001240
rosa_rugosa Rorug05G0483600
rosa_samantha Rh5AG533000 Rh5BG560300 Rh5CG583000 Rh5DG569600
rosa_wichuraiana Rw5G049990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 952
AatII GACGTC 1 cut(s) 828
Acc36I ACCTGC 1 cut(s) 952
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 651
AccII CGCG 2 cut(s) 222, 564
AclWI GGATC 3 cut(s) 452, 857, 870
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 2 cut(s) 104, 825
AfaI GTAC 2 cut(s) 391, 653
AfiI CCNNNNNNNGG 3 cut(s) 291, 639, 911
AhdI GACNNNNNGTC 1 cut(s) 284
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 9 cut(s) 62, 163, 170, 371, 439, 533, 576, 629, 761
AluI AGCT 9 cut(s) 62, 163, 170, 371, 439, 533, 576, 629, 761
Alw21I GWGCWC 2 cut(s) 578, 993
Alw26I GTCTC 2 cut(s) 260, 366
AlwI GGATC 3 cut(s) 452, 857, 870
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 2 cut(s) 94, 149
AoxI GGCC 4 cut(s) 196, 226, 295, 886
Asp718I GGTACC 1 cut(s) 651
AspLEI GCGC 2 cut(s) 222, 224
AspS9I GGNCC 3 cut(s) 137, 196, 295
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 416, 606
AvaI CYCGRG 2 cut(s) 94, 149
AvaII GGWCC 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 618
BamHI GGATCC 1 cut(s) 862
BanI GGYRCC 1 cut(s) 651
BanII GRGCYC 1 cut(s) 578
BauI CACGAG 1 cut(s) 571
BbsI GAAGAC 4 cut(s) 81, 807, 820, 990
Bbv12I GWGCWC 2 cut(s) 578, 993
BccI CCATC 2 cut(s) 19, 351
BceAI ACGGC 3 cut(s) 91, 237, 718
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 1 cut(s) 142
BclI TGATCA 2 cut(s) 441, 852
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 260, 366
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 3 cut(s) 684, 744, 879
BfuAI ACCTGC 1 cut(s) 952
BglI GCCNNNNNGGC 1 cut(s) 348
BglII AGATCT 1 cut(s) 319
Bme1390I CCNGG 2 cut(s) 142, 384
Bme18I GGWCC 1 cut(s) 137
BmeRI GACNNNNNGTC 1 cut(s) 284
BmeT110I CYCGRG 2 cut(s) 94, 149
BmgT120I GGNCC 3 cut(s) 137, 196, 295
BmiI GGNNCC 6 cut(s) 8, 139, 296, 653, 697, 864
BmrFI CCNGG 2 cut(s) 142, 384
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 1 cut(s) 568
BmuI ACTGGG 1 cut(s) 627
BpiI GAAGAC 4 cut(s) 81, 807, 820, 990
Bpu10I CCTNAGC 2 cut(s) 428, 960
BpuMI CCSGG 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 672
BsaHI GRCGYC 2 cut(s) 104, 825
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 5 cut(s) 140, 150, 346, 383, 691
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 639, 911
Bse118I RCCGGY 2 cut(s) 198, 224
Bse1I ACTGG 3 cut(s) 419, 599, 633
Bse21I CCTNAGG 1 cut(s) 618
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 5 cut(s) 140, 150, 346, 383, 691
BseGI GGATG 6 cut(s) 270, 324, 542, 802, 922, 1008
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 3 cut(s) 291, 639, 911
BseMII CTCAG 3 cut(s) 419, 609, 974
BseNI ACTGG 3 cut(s) 419, 599, 633
BsePI GCGCGC 1 cut(s) 220
BseRI GAGGAG 3 cut(s) 221, 335, 806
BseYI CCCAGC 2 cut(s) 371, 975
BsgI GTGCAG 1 cut(s) 48
Bsh1236I CGCG 2 cut(s) 222, 564
BshFI GGCC 4 cut(s) 198, 228, 297, 888
BshNI GGYRCC 1 cut(s) 651
BsiHKAI GWGCWC 2 cut(s) 578, 993
BsiHKCI CYCGRG 2 cut(s) 94, 149
BsiSI CCGG 3 cut(s) 199, 225, 383
BsiWI CGTACG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 3 cut(s) 291, 639, 911
BsmAI GTCTC 2 cut(s) 260, 366
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 4 cut(s) 198, 228, 297, 888
Bso31I GGTCTC 1 cut(s) 366
BsoBI CYCGRG 2 cut(s) 94, 149
Bsp1286I GDGCHC 2 cut(s) 578, 993
Bsp143I GATC 8 cut(s) 300, 319, 441, 457, 673, 852, 862, 1039
BspANI GGCC 4 cut(s) 198, 228, 297, 888
BspCNI CTCAG 3 cut(s) 420, 610, 973
BspFNI CGCG 2 cut(s) 222, 564
BspLI GGNNCC 6 cut(s) 8, 139, 296, 653, 697, 864
BspMAI CTGCAG 2 cut(s) 748, 883
BspMI ACCTGC 1 cut(s) 952
BspPI GGATC 3 cut(s) 452, 857, 870
BspT107I GGYRCC 1 cut(s) 651
BspTNI GGTCTC 1 cut(s) 366
BsrFI RCCGGY 2 cut(s) 198, 224
BsrI ACTGG 3 cut(s) 419, 599, 633
BssAI RCCGGY 2 cut(s) 198, 224
BssECI CCNNGG 5 cut(s) 140, 150, 346, 383, 691
BssHII GCGCGC 1 cut(s) 220
BssMI GATC 8 cut(s) 300, 319, 441, 457, 673, 852, 862, 1039
BssNI GRCGYC 2 cut(s) 104, 825
BssSI CACGAG 1 cut(s) 571
Bst2BI CACGAG 1 cut(s) 571
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 710, 812
Bst6I CTCTTC 3 cut(s) 125, 499, 838
BstACI GRCGYC 2 cut(s) 104, 825
BstAPI GCANNNNNTGC 3 cut(s) 62, 249, 944
BstC8I GCNNGC 4 cut(s) 222, 226, 886, 890
BstDEI CTNAG 3 cut(s) 428, 618, 960
BstDSI CCRYGG 1 cut(s) 691
BstF5I GGATG 6 cut(s) 270, 324, 542, 802, 922, 1008
BstFNI CGCG 2 cut(s) 222, 564
BstHHI GCGC 2 cut(s) 222, 224
BstKTI GATC 8 cut(s) 303, 322, 444, 460, 676, 855, 865, 1042
BstMAI GTCTC 2 cut(s) 260, 366
BstMBI GATC 8 cut(s) 300, 319, 441, 457, 673, 852, 862, 1039
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 140, 382
BstSFI CTRYAG 3 cut(s) 684, 744, 879
BstUI CGCG 2 cut(s) 222, 564
BstV2I GAAGAC 4 cut(s) 81, 807, 820, 990
BstX2I RGATCY 3 cut(s) 319, 457, 862
BstYI RGATCY 3 cut(s) 319, 457, 862
Bsu36I CCTNAGG 1 cut(s) 618
BsuRI GGCC 4 cut(s) 198, 228, 297, 888
BtgI CCRYGG 1 cut(s) 691
BtgZI GCGATG 1 cut(s) 545
BtsCI GGATG 6 cut(s) 270, 324, 542, 802, 922, 1008
BtsIMutI CAGTG 1 cut(s) 640
BveI ACCTGC 1 cut(s) 952
Cac8I GCNNGC 4 cut(s) 222, 226, 886, 890
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 2 cut(s) 222, 224
Cfr10I RCCGGY 2 cut(s) 198, 224
Cfr13I GGNCC 3 cut(s) 137, 196, 295
CseI GACGC 2 cut(s) 103, 112
Csp6I GTAC 2 cut(s) 390, 652
CviAII CATG 4 cut(s) 506, 656, 805, 994
CviQI GTAC 2 cut(s) 390, 652
DdeI CTNAG 3 cut(s) 428, 618, 960
DpnI GATC 8 cut(s) 302, 321, 443, 459, 675, 854, 864, 1041
DpnII GATC 8 cut(s) 300, 319, 441, 457, 673, 852, 862, 1039
DriI GACNNNNNGTC 1 cut(s) 284
Eam1104I CTCTTC 3 cut(s) 125, 499, 838
Eam1105I GACNNNNNGTC 1 cut(s) 284
EarI CTCTTC 3 cut(s) 125, 499, 838
EciI GGCGGA 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 576
Eco24I GRGCYC 1 cut(s) 578
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 576
Eco57I CTGAAG 1 cut(s) 149
Eco81I CCTNAGG 1 cut(s) 618
Eco88I CYCGRG 2 cut(s) 94, 149
EcoICRI GAGCTC 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 578
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 4 cut(s) 509, 659, 808, 997
FaiI YATR 7 cut(s) 455, 507, 657, 686, 719, 806, 995
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 1 cut(s) 123
FatI CATG 4 cut(s) 505, 655, 804, 993
FauI CCCGC 1 cut(s) 285
FbaI TGATCA 2 cut(s) 441, 852
FokI GGATG 6 cut(s) 277, 311, 529, 809, 909, 995
FriOI GRGCYC 1 cut(s) 578
FspBI CTAG 1 cut(s) 639
GlaI GCGC 2 cut(s) 221, 223
GsaI CCCAGC 2 cut(s) 375, 979
HaeIII GGCC 4 cut(s) 198, 228, 297, 888
HapII CCGG 3 cut(s) 199, 225, 383
HgaI GACGC 2 cut(s) 103, 112
HhaI GCGC 2 cut(s) 222, 224
Hin1I GRCGYC 2 cut(s) 104, 825
Hin1II CATG 4 cut(s) 509, 659, 808, 997
Hin6I GCGC 2 cut(s) 220, 222
HinP1I GCGC 2 cut(s) 220, 222
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 6 cut(s) 145, 379, 731, 950, 980, 1019
HpaII CCGG 3 cut(s) 199, 225, 383
HphI GGTGA 2 cut(s) 416, 606
Hpy166II GTNNAC 2 cut(s) 517, 691
Hpy188I TCNGA 5 cut(s) 129, 278, 366, 843, 852
Hpy188III TCNNGA 5 cut(s) 149, 181, 214, 485, 1012
Hpy8I GTNNAC 2 cut(s) 517, 691
Hpy99I CGWCG 2 cut(s) 824, 827
HpyAV CCTTC 2 cut(s) 182, 291
HpyCH4III ACNGT 2 cut(s) 710, 812
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 6 cut(s) 65, 746, 816, 881, 919, 938
HpyF3I CTNAG 3 cut(s) 428, 618, 960
HpySE526I ACGT 1 cut(s) 825
Hsp92I GRCGYC 2 cut(s) 104, 825
Hsp92II CATG 4 cut(s) 509, 659, 808, 997
HspAI GCGC 2 cut(s) 220, 222
KpnI GGTACC 1 cut(s) 655
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Ksp22I TGATCA 2 cut(s) 441, 852
Kzo9I GATC 8 cut(s) 300, 319, 441, 457, 673, 852, 862, 1039
LmnI GCTCC 4 cut(s) 527, 634, 695, 758
LweI GCATC 1 cut(s) 568
MaeI CTAG 1 cut(s) 639
MaeII ACGT 1 cut(s) 825
MaeIII GTNAC 1 cut(s) 658
MalI GATC 8 cut(s) 302, 321, 443, 459, 675, 854, 864, 1041
MboI GATC 8 cut(s) 300, 319, 441, 457, 673, 852, 862, 1039
MflI RGATCY 3 cut(s) 319, 457, 862
MhlI GDGCHC 2 cut(s) 578, 993
MluCI AATT 2 cut(s) 172, 780
MlyI GAGTC 2 cut(s) 139, 725
MmeI TCCRAC 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 1 cut(s) 1032
MslI CAYNNNNRTG 1 cut(s) 927
MspA1I CMGCKG 4 cut(s) 62, 237, 261, 533
MspI CCGG 3 cut(s) 199, 225, 383
MspR9I CCNGG 2 cut(s) 142, 384
Mva1269I GAATGC 1 cut(s) 921
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 2 cut(s) 222, 564
NaeI GCCGGC 1 cut(s) 226
NciI CCSGG 1 cut(s) 384
NdeII GATC 8 cut(s) 300, 319, 441, 457, 673, 852, 862, 1039
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 4 cut(s) 509, 659, 808, 997
NlaIV GGNNCC 6 cut(s) 8, 139, 296, 653, 697, 864
NmeAIII GCCGAG 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 94
PaqCI CACCTGC 1 cut(s) 952
PauI GCGCGC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PctI GAATGC 1 cut(s) 921
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 4 cut(s) 379, 950, 980, 1019
Pfl23II CGTACG 1 cut(s) 389
PflFI GACNNNGTC 1 cut(s) 824
PleI GAGTC 2 cut(s) 139, 725
PpsI GAGTC 2 cut(s) 139, 725
PpuMI RGGWCCY 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 578
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 140
PspFI CCCAGC 2 cut(s) 371, 975
PspGI CCWGG 1 cut(s) 140
PspLI CGTACG 1 cut(s) 389
PspN4I GGNNCC 6 cut(s) 8, 139, 296, 653, 697, 864
PspPI GGNCC 3 cut(s) 137, 196, 295
PspPPI RGGWCCY 1 cut(s) 137
PspXI VCTCGAGB 1 cut(s) 94
PstI CTGCAG 2 cut(s) 748, 883
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 3 cut(s) 319, 457, 862
PsyI GACNNNGTC 1 cut(s) 824
PteI GCGCGC 1 cut(s) 220
PvuII CAGCTG 2 cut(s) 62, 533
RsaI GTAC 2 cut(s) 391, 653
RsaNI GTAC 2 cut(s) 390, 652
RseI CAYNNNNRTG 1 cut(s) 927
SacI GAGCTC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 1032
Sau3AI GATC 8 cut(s) 300, 319, 441, 457, 673, 852, 862, 1039
Sau96I GGNCC 3 cut(s) 137, 196, 295
SchI GAGTC 2 cut(s) 139, 725
ScrFI CCNGG 2 cut(s) 142, 384
SduI GDGCHC 2 cut(s) 578, 993
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 3 cut(s) 684, 744, 879
Sfr274I CTCGAG 1 cut(s) 94
SinI GGWCC 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 927
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 2 cut(s) 172, 780
SspMI CTAG 1 cut(s) 639
SstI GAGCTC 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 140, 382
TaaI ACNGT 2 cut(s) 710, 812
TaiI ACGT 1 cut(s) 828
TaqI TCGA 3 cut(s) 17, 95, 1038
TasI AATT 2 cut(s) 172, 780
TauI GCSGC 4 cut(s) 243, 308, 567, 570
TfiI GAWTC 4 cut(s) 379, 950, 980, 1019
Tru1I TTAA 1 cut(s) 1032
Tru9I TTAA 1 cut(s) 1032
TscAI CASTG 1 cut(s) 640
TspDTI ATGAA 7 cut(s) 281, 327, 531, 600, 813, 821, 997
TspGWI ACGGA 4 cut(s) 274, 407, 708, 855
TspRI CASTG 1 cut(s) 640
Tth111I GACNNNGTC 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 137
XhoI CTCGAG 1 cut(s) 94
XspI CTAG 1 cut(s) 639
ZraI GACGTC 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.