Rh5DG569600
MYB Family

transcription repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015126
Physical Location & Seq
Reverse (-)
87584107 .. 87585666
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG569600.1

Sequence Viewer

Length: 1062 bp
ATGAGGAACCCATCTTCGACCTCATCTTCCTCCAAAGGAAAATCATCATCATCAGCAGCAGCAGCAGCAGCTGCACCCAAAACAGCAGCAGTATCGTCTTCCTCGAGCAAGACGCCGTGCTGCGTCAAGGTGGGTCTGAAGAGAGGTCCCTGGACTCCCGAGGAAGATGAGCTCTTAGCTAGTTACATCAAGAAAGAAGGCGAGGGCCGGTGGCGAACCCTCCCGAAGCGTGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGTCTCCGCTGGATGAACTACCTCCGACCTTCCGTCAAGCGGGGTCAGATCGCCTCAGATGAAGAAGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAATAGATGGTCTCTGATAGCTGGGAGGATTCCGGGGCGTACGGACAATGAGATAAAGAACTACTGGAACACTCACCTGAGCAAGAAGCTCATCAGTCAGGGCATAGATCCAAGAACCCACAAGCCACTCAATCCAGATACCTCTTCTGCTGACCATGCTGCTGTCAACAATAATGGAGCAGCTGCTTCTTCATCCAAGACCAATCAGCATCGCGGCGGCACGAGCTCAAACCCTAGCCCTAAAAGTCCAATTACTTCTTCATCACCTGAGGAAGCAGCTCCCAGTGCTAGGGAAAATGGGTACCATGTTACCAATGATGATGATCTGGGGGCTATAGTCCACGGAGCCAACGGCTACGGTAATGTTATGACCTCCAATGACTCTAATGGGTCTGCAGCAGGAATGGGAGGTCTGAGAAGCAACCTACTAATTGGAAATGAGGAGGATGAAGACATGAACTGTTGCACCGACGACGTCTTCTCTTCGTTTCTGAACTCTCTGATCAATGAGGATCCGTTTGCTGCTGCTGCAGCAGGCCAGCACCATTCGCAGCCATTACAAGGAATGCAACATCCTAATGGGATTGCACCACCTGCTGATTCTTCTGCTCAGGCTTTCGGTGGCTGGGAATCTGCGGTGCTCATGTCTTCCGCTTTCATCCAGAATGATTCTCACAGGGTTAATGTCGATCAAACACAATAG

Protein Analysis

353

Amino Acids

37.53

Weight (kDa)

8.19

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 48 - 95 1.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 51 - 107 2.1e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 106 - 146 5.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 106 - 149 3.7e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13540
fragaria_vesca FvH4_3g45450
malus_domestica MD11G1006500.v1.1 MD11G1007500.v1.1
prunus_persica Prupe.6G004700_v2.0.a1
pyrus_communis pycom11g00510
rosa_laevigata RLG00000037022
rosa_multiflora Rmu_co8442277.1_g000001 Rmu_sc0011792.1_g000005
rosa_roxburghii Rroxscaffold_1G00001240
rosa_rugosa Rorug05G0483600
rosa_samantha Rh5AG533000 Rh5BG560300 Rh5CG583000 Rh5DG569600
rosa_wichuraiana Rw5G049990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 961
AatII GACGTC 1 cut(s) 837
Acc36I ACCTGC 1 cut(s) 961
Acc65I GGTACC 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 660
AccII CGCG 1 cut(s) 573
AclWI GGATC 3 cut(s) 461, 866, 879
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 2 cut(s) 113, 834
AfaI GTAC 2 cut(s) 400, 662
AfiI CCNNNNNNNGG 3 cut(s) 300, 648, 920
AhdI GACNNNNNGTC 1 cut(s) 293
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 601, 633
AluBI AGCT 9 cut(s) 71, 172, 179, 258, 380, 448, 542, 585, 638
AluI AGCT 9 cut(s) 71, 172, 179, 258, 380, 448, 542, 585, 638
Alw21I GWGCWC 3 cut(s) 174, 587, 1002
Alw26I GTCTC 2 cut(s) 269, 375
AlwI GGATC 3 cut(s) 461, 866, 879
AlwNI CAGNNNCTG 1 cut(s) 71
Ama87I CYCGRG 2 cut(s) 103, 158
AoxI GGCC 3 cut(s) 205, 235, 895
Asp718I GGTACC 1 cut(s) 660
AspS9I GGNCC 2 cut(s) 146, 205
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 425, 615
AvaI CYCGRG 2 cut(s) 103, 158
AvaII GGWCC 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 627
BamHI GGATCC 1 cut(s) 871
BanI GGYRCC 1 cut(s) 660
BanII GRGCYC 2 cut(s) 174, 587
BauI CACGAG 1 cut(s) 580
BbsI GAAGAC 4 cut(s) 90, 816, 829, 999
Bbv12I GWGCWC 3 cut(s) 174, 587, 1002
BccI CCATC 2 cut(s) 19, 360
BceAI ACGGC 3 cut(s) 100, 246, 727
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 861
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 269, 375
BfaI CTAG 3 cut(s) 180, 594, 648
BfmI CTRYAG 3 cut(s) 693, 753, 888
BfuAI ACCTGC 1 cut(s) 961
BglI GCCNNNNNGGC 1 cut(s) 357
BglII AGATCT 1 cut(s) 328
Bme1390I CCNGG 2 cut(s) 151, 393
Bme18I GGWCC 1 cut(s) 146
BmeRI GACNNNNNGTC 1 cut(s) 293
BmeT110I CYCGRG 2 cut(s) 103, 158
BmgT120I GGNCC 2 cut(s) 146, 205
BmiI GGNNCC 5 cut(s) 8, 148, 662, 706, 873
BmrFI CCNGG 2 cut(s) 151, 393
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 636
BpiI GAAGAC 4 cut(s) 90, 816, 829, 999
Bpu10I CCTNAGC 2 cut(s) 437, 969
BpuMI CCSGG 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 2 cut(s) 113, 834
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 5 cut(s) 149, 159, 355, 392, 700
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 648, 920
Bse118I RCCGGY 2 cut(s) 207, 233
Bse1I ACTGG 2 cut(s) 428, 642
Bse21I CCTNAGG 1 cut(s) 627
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 5 cut(s) 149, 159, 355, 392, 700
BseGI GGATG 6 cut(s) 279, 333, 551, 811, 931, 1017
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 3 cut(s) 300, 648, 920
BseMII CTCAG 5 cut(s) 330, 428, 618, 764, 983
BseNI ACTGG 2 cut(s) 428, 642
BseRI GAGGAG 3 cut(s) 230, 344, 815
BseYI CCCAGC 2 cut(s) 380, 984
BsgI GTGCAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 573
BshFI GGCC 3 cut(s) 207, 237, 897
BshNI GGYRCC 1 cut(s) 660
BsiHKAI GWGCWC 3 cut(s) 174, 587, 1002
BsiHKCI CYCGRG 2 cut(s) 103, 158
BsiSI CCGG 3 cut(s) 208, 234, 392
BsiWI CGTACG 1 cut(s) 398
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 3 cut(s) 300, 648, 920
BsmAI GTCTC 2 cut(s) 269, 375
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 132
BsmI GAATGC 1 cut(s) 930
BsnI GGCC 3 cut(s) 207, 237, 897
Bso31I GGTCTC 1 cut(s) 375
BsoBI CYCGRG 2 cut(s) 103, 158
Bsp1286I GDGCHC 3 cut(s) 174, 587, 1002
Bsp143I GATC 7 cut(s) 309, 328, 466, 682, 861, 871, 1048
BspANI GGCC 3 cut(s) 207, 237, 897
BspCNI CTCAG 5 cut(s) 329, 429, 619, 765, 982
BspFNI CGCG 1 cut(s) 573
BspLI GGNNCC 5 cut(s) 8, 148, 662, 706, 873
BspMAI CTGCAG 2 cut(s) 757, 892
BspMI ACCTGC 1 cut(s) 961
BspPI GGATC 3 cut(s) 461, 866, 879
BspT107I GGYRCC 1 cut(s) 660
BspTNI GGTCTC 1 cut(s) 375
BsrFI RCCGGY 2 cut(s) 207, 233
BsrI ACTGG 2 cut(s) 428, 642
BssAI RCCGGY 2 cut(s) 207, 233
BssECI CCNNGG 5 cut(s) 149, 159, 355, 392, 700
BssMI GATC 7 cut(s) 309, 328, 466, 682, 861, 871, 1048
BssNI GRCGYC 2 cut(s) 113, 834
BssSI CACGAG 1 cut(s) 580
Bst2BI CACGAG 1 cut(s) 580
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 719, 821
Bst6I CTCTTC 3 cut(s) 134, 508, 847
BstACI GRCGYC 2 cut(s) 113, 834
BstAPI GCANNNNNTGC 3 cut(s) 71, 258, 953
BstC8I GCNNGC 4 cut(s) 231, 235, 895, 899
BstDEI CTNAG 6 cut(s) 175, 316, 437, 627, 773, 969
BstDSI CCRYGG 1 cut(s) 700
BstF5I GGATG 6 cut(s) 279, 333, 551, 811, 931, 1017
BstFNI CGCG 1 cut(s) 573
BstKTI GATC 7 cut(s) 312, 331, 469, 685, 864, 874, 1051
BstMAI GTCTC 2 cut(s) 269, 375
BstMBI GATC 7 cut(s) 309, 328, 466, 682, 861, 871, 1048
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 149, 391
BstSFI CTRYAG 3 cut(s) 693, 753, 888
BstUI CGCG 1 cut(s) 573
BstV2I GAAGAC 4 cut(s) 90, 816, 829, 999
BstX2I RGATCY 3 cut(s) 328, 466, 871
BstYI RGATCY 3 cut(s) 328, 466, 871
Bsu36I CCTNAGG 1 cut(s) 627
BsuRI GGCC 3 cut(s) 207, 237, 897
BtgI CCRYGG 1 cut(s) 700
BtgZI GCGATG 1 cut(s) 554
BtsCI GGATG 6 cut(s) 279, 333, 551, 811, 931, 1017
BtsIMutI CAGTG 1 cut(s) 649
BveI ACCTGC 1 cut(s) 961
Cac8I GCNNGC 4 cut(s) 231, 235, 895, 899
CaiI CAGNNNCTG 1 cut(s) 71
Cfr10I RCCGGY 2 cut(s) 207, 233
Cfr13I GGNCC 2 cut(s) 146, 205
CseI GACGC 2 cut(s) 112, 121
Csp6I GTAC 2 cut(s) 399, 661
CviAII CATG 4 cut(s) 515, 665, 814, 1003
CviQI GTAC 2 cut(s) 399, 661
DdeI CTNAG 6 cut(s) 175, 316, 437, 627, 773, 969
DpnI GATC 7 cut(s) 311, 330, 468, 684, 863, 873, 1050
DpnII GATC 7 cut(s) 309, 328, 466, 682, 861, 871, 1048
DriI GACNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 3 cut(s) 134, 508, 847
Eam1105I GACNNNNNGTC 1 cut(s) 293
EarI CTCTTC 3 cut(s) 134, 508, 847
EciI GGCGGA 1 cut(s) 329
Ecl136II GAGCTC 2 cut(s) 172, 585
Eco24I GRGCYC 2 cut(s) 174, 587
Eco31I GGTCTC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 2 cut(s) 172, 585
Eco57I CTGAAG 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 627
Eco88I CYCGRG 2 cut(s) 103, 158
EcoICRI GAGCTC 2 cut(s) 172, 585
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 149
EcoT38I GRGCYC 2 cut(s) 174, 587
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 4 cut(s) 518, 668, 817, 1006
FaiI YATR 7 cut(s) 464, 516, 666, 695, 728, 815, 1004
FaqI GGGAC 1 cut(s) 132
FatI CATG 4 cut(s) 514, 664, 813, 1002
FauI CCCGC 1 cut(s) 294
FbaI TGATCA 1 cut(s) 861
FokI GGATG 6 cut(s) 286, 320, 538, 818, 918, 1004
FriOI GRGCYC 2 cut(s) 174, 587
FspBI CTAG 3 cut(s) 180, 594, 648
GsaI CCCAGC 2 cut(s) 384, 988
HaeIII GGCC 3 cut(s) 207, 237, 897
HapII CCGG 3 cut(s) 208, 234, 392
HgaI GACGC 2 cut(s) 112, 121
Hin1I GRCGYC 2 cut(s) 113, 834
Hin1II CATG 4 cut(s) 518, 668, 817, 1006
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 6 cut(s) 154, 388, 740, 959, 989, 1028
HpaII CCGG 3 cut(s) 208, 234, 392
HphI GGTGA 2 cut(s) 425, 615
Hpy166II GTNNAC 2 cut(s) 526, 700
Hpy188I TCNGA 8 cut(s) 138, 287, 309, 319, 375, 774, 852, 861
Hpy188III TCNNGA 5 cut(s) 158, 190, 223, 494, 1021
Hpy8I GTNNAC 2 cut(s) 526, 700
Hpy99I CGWCG 2 cut(s) 833, 836
HpyAV CCTTC 2 cut(s) 191, 300
HpyCH4III ACNGT 2 cut(s) 719, 821
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 6 cut(s) 74, 755, 825, 890, 928, 947
HpyF3I CTNAG 6 cut(s) 175, 316, 437, 627, 773, 969
HpySE526I ACGT 1 cut(s) 834
Hsp92I GRCGYC 2 cut(s) 113, 834
Hsp92II CATG 4 cut(s) 518, 668, 817, 1006
KpnI GGTACC 1 cut(s) 664
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 861
Kzo9I GATC 7 cut(s) 309, 328, 466, 682, 861, 871, 1048
LmnI GCTCC 3 cut(s) 536, 643, 704
LweI GCATC 1 cut(s) 577
MaeI CTAG 3 cut(s) 180, 594, 648
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 2 cut(s) 182, 667
MalI GATC 7 cut(s) 311, 330, 468, 684, 863, 873, 1050
MboI GATC 7 cut(s) 309, 328, 466, 682, 861, 871, 1048
MflI RGATCY 3 cut(s) 328, 466, 871
MhlI GDGCHC 3 cut(s) 174, 587, 1002
MluCI AATT 2 cut(s) 609, 789
MlyI GAGTC 2 cut(s) 148, 734
MmeI TCCRAC 1 cut(s) 310
MroNI GCCGGC 1 cut(s) 233
MseI TTAA 1 cut(s) 1041
MslI CAYNNNNRTG 1 cut(s) 936
MspA1I CMGCKG 4 cut(s) 71, 246, 270, 542
MspI CCGG 3 cut(s) 208, 234, 392
MspR9I CCNGG 2 cut(s) 151, 393
Mva1269I GAATGC 1 cut(s) 930
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 573
NaeI GCCGGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 393
NdeII GATC 7 cut(s) 309, 328, 466, 682, 861, 871, 1048
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 4 cut(s) 518, 668, 817, 1006
NlaIV GGNNCC 5 cut(s) 8, 148, 662, 706, 873
NmeAIII GCCGAG 1 cut(s) 336
PaeR7I CTCGAG 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 961
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PctI GAATGC 1 cut(s) 930
PdiI GCCGGC 1 cut(s) 235
PfeI GAWTC 4 cut(s) 388, 959, 989, 1028
Pfl23II CGTACG 1 cut(s) 398
PflFI GACNNNGTC 1 cut(s) 833
PleI GAGTC 2 cut(s) 148, 734
PpsI GAGTC 2 cut(s) 148, 734
PpuMI RGGWCCY 1 cut(s) 146
Psp124BI GAGCTC 2 cut(s) 174, 587
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 2 cut(s) 380, 984
PspGI CCWGG 1 cut(s) 149
PspLI CGTACG 1 cut(s) 398
PspN4I GGNNCC 5 cut(s) 8, 148, 662, 706, 873
PspPI GGNCC 2 cut(s) 146, 205
PspPPI RGGWCCY 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 103
PstI CTGCAG 2 cut(s) 757, 892
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 3 cut(s) 328, 466, 871
PsyI GACNNNGTC 1 cut(s) 833
PvuII CAGCTG 2 cut(s) 71, 542
RsaI GTAC 2 cut(s) 400, 662
RsaNI GTAC 2 cut(s) 399, 661
RseI CAYNNNNRTG 1 cut(s) 936
SacI GAGCTC 2 cut(s) 174, 587
SaqAI TTAA 1 cut(s) 1041
Sau3AI GATC 7 cut(s) 309, 328, 466, 682, 861, 871, 1048
Sau96I GGNCC 2 cut(s) 146, 205
SchI GAGTC 2 cut(s) 148, 734
ScrFI CCNGG 2 cut(s) 151, 393
SduI GDGCHC 3 cut(s) 174, 587, 1002
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 3 cut(s) 693, 753, 888
Sfr274I CTCGAG 1 cut(s) 103
SinI GGWCC 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 936
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 2 cut(s) 609, 789
SspMI CTAG 3 cut(s) 180, 594, 648
SstI GAGCTC 2 cut(s) 174, 587
StyD4I CCNGG 2 cut(s) 149, 391
TaaI ACNGT 2 cut(s) 719, 821
TaiI ACGT 1 cut(s) 837
TaqI TCGA 3 cut(s) 17, 104, 1047
TasI AATT 2 cut(s) 609, 789
TauI GCSGC 3 cut(s) 252, 576, 579
TfiI GAWTC 4 cut(s) 388, 959, 989, 1028
Tru1I TTAA 1 cut(s) 1041
Tru9I TTAA 1 cut(s) 1041
TscAI CASTG 1 cut(s) 649
TspDTI ATGAA 7 cut(s) 290, 336, 540, 609, 822, 830, 1006
TspGWI ACGGA 4 cut(s) 283, 416, 717, 864
TspRI CASTG 1 cut(s) 649
Tth111I GACNNNGTC 1 cut(s) 833
VpaK11BI GGWCC 1 cut(s) 146
XhoI CTCGAG 1 cut(s) 103
XspI CTAG 3 cut(s) 180, 594, 648
ZraI GACGTC 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.