MD11G1007500.v1.1
MYB Family

transcription repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015126
Physical Location & Seq
Forward (+)
672377 .. 673703
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1007500.v1.1.491

Sequence Viewer

Length: 1083 bp
ATGAGGAACCCATCGTCTTCGTCGAAAGCAGCGGCAGCAGCAAGTGCTAAGATGCAAACGACGATAACAGCGTCGTCCTCGTCGAGCAAGGCGGCTGGGGTTGCTGGAGGGACCAAGACGCCGTGTTGCGCAAAGGTGGGTTTGAAGAGAGGGCCTTGGACTCCCGAAGAGGACGAGCTGCTGGCAAATTACATCAAGAAAGAAGGAGAGGGACGGTGGCGGACCCTTCCCAAGCGGGCTGGGTTGCTCCGCTGCGGTAAGAGCTGCCGCCTCCGCTGGATGAACTATCTCCGCCTTCTGTCAAGCGCGGCCAGATCGCCCCCGATGAAGAAGATCTCATCCTTCGCCTCCATCGCCTTCTGGGCAATCGCTGGGAGGATTCCAGGCCGTACGGACAATGAGATAAAGAACTACTGGAACACACACCTGAGCAAGAAGCTGATAAGCCAAGGCATAGATCCCAGAACCCACAAGCCTCTCAATCCAGATCATCACTCTGCTGCTGATGATGCTGACGTGGACAACACAAACAAATCAACTGCTGTTGCTTCTTCTTCCAAAGCCAATGATCGGTTCTCAAACCCTAACCCTAGTCCCCCTTCTGATCGTCTTGTCCATAAAGAAGGGGATCCAAATAACAGCCGTAATGATGGAAACATCGCAATTGCTGATCATGATCTGGGCACTATAGTCCATGGCTTTGCAAATATGATCACGTCCATCAACAATCCCGATGCTTCTTCTTCGGCCGCGGCAACGGGTACTTTGAGTTTGAGGAGCAACAACAGCCACGGTGGAGTACTACTTGCGGGAGGAGGAAATGAAGAGGACGACGTCTTCTCTTCGTTTCTGAATTCGTTGATCAATGAGGATCCATTTCCTGGACAACACCAATTGCAACAAGTACTGCAGAATGGGAATGTTAGTGCACACGCAGCTGCTGCTCGTTCCGAGAACCTTCCTTTGATTAATATGACTAGTGCTACTACGGCGCCATCAACATTTGGCTGGGAGTCTGCTGTGCTCATGTCTTCTGCTTTCATCCAAAATGATCACCAGAGGGTTAATGATCAAACGGAGTAG

Protein Analysis

361

Amino Acids

38.42

Weight (kDa)

9.0

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 50 - 97 8.1e-17 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13540
fragaria_vesca FvH4_3g45450
malus_domestica MD11G1006500.v1.1 MD11G1007500.v1.1
prunus_persica Prupe.6G004700_v2.0.a1
pyrus_communis pycom11g00510
rosa_laevigata RLG00000037022
rosa_multiflora Rmu_co8442277.1_g000001 Rmu_sc0011792.1_g000005
rosa_roxburghii Rroxscaffold_1G00001240
rosa_rugosa Rorug05G0483600
rosa_samantha Rh5AG533000 Rh5BG560300 Rh5CG583000 Rh5DG569600
rosa_wichuraiana Rw5G049990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 837
Acc16I TGCGCA 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 991
AccB7I CCANNNNNTGG 1 cut(s) 881
AccII CGCG 2 cut(s) 308, 752
AclWI GGATC 5 cut(s) 452, 623, 636, 866, 879
AcoI YGGCCR 2 cut(s) 309, 747
AcsI RAATTY 1 cut(s) 853
AcyI GRCGYC 3 cut(s) 119, 834, 992
AfaI GTAC 4 cut(s) 391, 763, 801, 906
AfiI CCNNNNNNNGG 2 cut(s) 570, 881
AgsI TTSAA 1 cut(s) 145
AhlI ACTAGT 1 cut(s) 977
AjiI CACGTC 2 cut(s) 517, 717
AjnI CCWGG 2 cut(s) 382, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 4 cut(s) 178, 264, 439, 938
AluI AGCT 4 cut(s) 178, 264, 439, 938
Alw21I GWGCWC 2 cut(s) 931, 1026
Alw44I GTGCAC 1 cut(s) 927
AlwI GGATC 5 cut(s) 452, 623, 636, 866, 879
AlwNI CAGNNNCTG 1 cut(s) 941
AoxI GGCC 4 cut(s) 152, 309, 385, 747
ApaLI GTGCAC 1 cut(s) 927
ApoI RAATTY 1 cut(s) 853
AseI ATTAAT 1 cut(s) 969
AspLEI GCGC 3 cut(s) 131, 308, 994
AspS9I GGNCC 3 cut(s) 111, 152, 222
AsuHPI GGTGA 1 cut(s) 1046
AvaII GGWCC 2 cut(s) 111, 222
BaeGI GKGCMC 2 cut(s) 686, 931
BamHI GGATCC 2 cut(s) 628, 871
BanI GGYRCC 1 cut(s) 991
BbsI GAAGAC 3 cut(s) 9, 829, 1023
Bbv12I GWGCWC 2 cut(s) 931, 1026
BccI CCATC 5 cut(s) 19, 359, 644, 728, 1003
BceAI ACGGC 4 cut(s) 106, 372, 627, 1005
BciT130I CCWGG 2 cut(s) 384, 882
BclI TGATCA 5 cut(s) 670, 711, 861, 1051, 1069
BcuI ACTAGT 1 cut(s) 977
BfaI CTAG 2 cut(s) 591, 978
BfmI CTRYAG 2 cut(s) 687, 908
BfoI RGCGCY 1 cut(s) 995
BglI GCCNNNNNGGC 1 cut(s) 362
BglII AGATCT 1 cut(s) 333
BmcAI AGTACT 2 cut(s) 801, 906
Bme1390I CCNGG 2 cut(s) 384, 882
Bme18I GGWCC 2 cut(s) 111, 222
BmgBI CACGTC 2 cut(s) 517, 717
BmgT120I GGNCC 3 cut(s) 111, 152, 222
BmiI GGNNCC 6 cut(s) 8, 112, 224, 630, 873, 993
BmrFI CCNGG 2 cut(s) 384, 882
BmsI GCATC 3 cut(s) 42, 499, 724
BpiI GAAGAC 3 cut(s) 9, 829, 1023
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 428
BsaBI GATNNNNATC 1 cut(s) 675
BsaHI GRCGYC 3 cut(s) 119, 834, 992
BsaJI CCNNGG 5 cut(s) 155, 448, 694, 750, 790
Bsc4I CCNNNNNNNGG 2 cut(s) 570, 881
Bse1I ACTGG 1 cut(s) 419
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 2 cut(s) 384, 882
BseDI CCNNGG 5 cut(s) 155, 448, 694, 750, 790
BseGI GGATG 3 cut(s) 285, 338, 1041
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 2 cut(s) 570, 881
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 1 cut(s) 419
BseRI GAGGAG 2 cut(s) 790, 828
BseSI GKGCMC 2 cut(s) 686, 931
BseX3I CGGCCG 1 cut(s) 747
BseYI CCCAGC 4 cut(s) 95, 239, 371, 1008
Bsh1236I CGCG 2 cut(s) 308, 752
Bsh1285I CGRYCG 1 cut(s) 750
BshFI GGCC 4 cut(s) 154, 311, 387, 749
BshNI GGYRCC 1 cut(s) 991
BsiEI CGRYCG 1 cut(s) 750
BsiHKAI GWGCWC 2 cut(s) 931, 1026
BsiWI CGTACG 1 cut(s) 389
BslFI GGGAC 3 cut(s) 124, 225, 579
BslI CCNNNNNNNGG 2 cut(s) 570, 881
BsmFI GGGAC 3 cut(s) 124, 225, 579
BsnI GGCC 4 cut(s) 154, 311, 387, 749
Bsp1286I GDGCHC 3 cut(s) 686, 931, 1026
Bsp19I CCATGG 1 cut(s) 694
BspANI GGCC 4 cut(s) 154, 311, 387, 749
BspCNI CTCAG 1 cut(s) 420
BspFNI CGCG 2 cut(s) 308, 752
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 6 cut(s) 8, 112, 224, 630, 873, 993
BspMAI CTGCAG 1 cut(s) 912
BspPI GGATC 5 cut(s) 452, 623, 636, 866, 879
BspT107I GGYRCC 1 cut(s) 991
BsrI ACTGG 1 cut(s) 419
BssECI CCNNGG 5 cut(s) 155, 448, 694, 750, 790
BssNI GRCGYC 3 cut(s) 119, 834, 992
BssT1I CCWWGG 3 cut(s) 155, 448, 694
Bst2UI CCWGG 2 cut(s) 384, 882
Bst4CI ACNGT 2 cut(s) 216, 794
Bst6I CTCTTC 4 cut(s) 140, 162, 819, 847
BstACI GRCGYC 3 cut(s) 119, 834, 992
BstAPI GCANNNNNTGC 2 cut(s) 44, 941
BstC8I GCNNGC 2 cut(s) 183, 237
BstDEI CTNAG 2 cut(s) 48, 428
BstDSI CCRYGG 3 cut(s) 694, 750, 790
BstF5I GGATG 3 cut(s) 285, 338, 1041
BstFNI CGCG 2 cut(s) 308, 752
BstH2I RGCGCY 1 cut(s) 995
BstHHI GCGC 3 cut(s) 131, 308, 994
BstMCI CGRYCG 1 cut(s) 750
BstNI CCWGG 2 cut(s) 384, 882
BstSCI CCNGG 2 cut(s) 382, 880
BstSFI CTRYAG 2 cut(s) 687, 908
BstSLI GKGCMC 2 cut(s) 686, 931
BstUI CGCG 2 cut(s) 308, 752
BstV2I GAAGAC 3 cut(s) 9, 829, 1023
BstX2I RGATCY 4 cut(s) 333, 457, 628, 871
BstYI RGATCY 4 cut(s) 333, 457, 628, 871
BstZI CGGCCG 1 cut(s) 747
BsuRI GGCC 4 cut(s) 154, 311, 387, 749
BtgI CCRYGG 3 cut(s) 694, 750, 790
BtgZI GCGATG 2 cut(s) 337, 643
BtrI CACGTC 2 cut(s) 517, 717
BtsCI GGATG 3 cut(s) 285, 338, 1041
Cac8I GCNNGC 2 cut(s) 183, 237
CaiI CAGNNNCTG 1 cut(s) 941
CciI TCATGA 1 cut(s) 673
CfoI GCGC 3 cut(s) 131, 308, 994
Cfr13I GGNCC 3 cut(s) 111, 152, 222
Cfr42I CCGCGG 1 cut(s) 753
CseI GACGC 2 cut(s) 60, 127
Csp6I GTAC 4 cut(s) 390, 762, 800, 905
CviAII CATG 3 cut(s) 674, 695, 1027
CviQI GTAC 4 cut(s) 390, 762, 800, 905
DdeI CTNAG 2 cut(s) 48, 428
DinI GGCGCC 1 cut(s) 993
EaeI YGGCCR 2 cut(s) 309, 747
EagI CGGCCG 1 cut(s) 747
Eam1104I CTCTTC 4 cut(s) 140, 162, 819, 847
EarI CTCTTC 4 cut(s) 140, 162, 819, 847
EciI GGCGGA 2 cut(s) 235, 281
EclXI CGGCCG 1 cut(s) 747
Eco130I CCWWGG 3 cut(s) 155, 448, 694
Eco47I GGWCC 2 cut(s) 111, 222
Eco52I CGGCCG 1 cut(s) 747
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 2 cut(s) 382, 880
EcoT14I CCWWGG 3 cut(s) 155, 448, 694
EgeI GGCGCC 1 cut(s) 993
EheI GGCGCC 1 cut(s) 993
ErhI CCWWGG 3 cut(s) 155, 448, 694
FaeI CATG 3 cut(s) 677, 698, 1030
FaiI YATR 8 cut(s) 455, 618, 675, 689, 696, 710, 974, 1028
FaqI GGGAC 3 cut(s) 124, 225, 579
FatI CATG 3 cut(s) 673, 694, 1026
FauI CCCGC 2 cut(s) 228, 802
FbaI TGATCA 5 cut(s) 670, 711, 861, 1051, 1069
FokI GGATG 3 cut(s) 292, 325, 1028
FspBI CTAG 2 cut(s) 591, 978
FspI TGCGCA 1 cut(s) 130
GlaI GCGC 3 cut(s) 130, 307, 993
GsaI CCCAGC 4 cut(s) 99, 243, 375, 1012
GsuI CTGGAG 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 995
HaeIII GGCC 4 cut(s) 154, 311, 387, 749
HgaI GACGC 2 cut(s) 60, 127
HhaI GCGC 3 cut(s) 131, 308, 994
Hin1I GRCGYC 3 cut(s) 119, 834, 992
Hin1II CATG 3 cut(s) 677, 698, 1030
Hin6I GCGC 3 cut(s) 129, 306, 992
HinP1I GCGC 3 cut(s) 129, 306, 992
HinfI GANTC 3 cut(s) 160, 379, 1013
HphI GGTGA 1 cut(s) 1046
Hpy166II GTNNAC 2 cut(s) 520, 929
Hpy188I TCNGA 3 cut(s) 604, 852, 952
Hpy188III TCNNGA 5 cut(s) 164, 196, 485, 674, 731
Hpy8I GTNNAC 2 cut(s) 520, 929
Hpy99I CGWCG 5 cut(s) 25, 64, 76, 85, 836
HpyAV CCTTC 8 cut(s) 197, 236, 305, 352, 367, 609, 617, 968
HpyCH4III ACNGT 2 cut(s) 216, 794
HpyCH4IV ACGT 3 cut(s) 516, 716, 834
HpyCH4V TGCA 5 cut(s) 55, 704, 898, 910, 929
HpyF3I CTNAG 2 cut(s) 48, 428
HpySE526I ACGT 3 cut(s) 516, 716, 834
Hsp92I GRCGYC 3 cut(s) 119, 834, 992
Hsp92II CATG 3 cut(s) 677, 698, 1030
HspAI GCGC 3 cut(s) 129, 306, 992
KasI GGCGCC 1 cut(s) 991
Ksp22I TGATCA 5 cut(s) 670, 711, 861, 1051, 1069
KspI CCGCGG 1 cut(s) 753
LmnI GCTCC 2 cut(s) 252, 777
LweI GCATC 3 cut(s) 42, 499, 724
MaeI CTAG 2 cut(s) 591, 978
MaeII ACGT 3 cut(s) 516, 716, 834
MfeI CAATTG 2 cut(s) 663, 893
MflI RGATCY 4 cut(s) 333, 457, 628, 871
MhlI GDGCHC 3 cut(s) 686, 931, 1026
MluCI AATT 4 cut(s) 187, 663, 853, 893
Mly113I GGCGCC 1 cut(s) 992
MlyI GAGTC 2 cut(s) 154, 1022
MseI TTAA 2 cut(s) 969, 1065
MspA1I CMGCKG 5 cut(s) 32, 252, 276, 752, 938
MspR9I CCNGG 2 cut(s) 384, 882
MunI CAATTG 2 cut(s) 663, 893
MvaI CCWGG 2 cut(s) 384, 882
MvnI CGCG 2 cut(s) 308, 752
NarI GGCGCC 1 cut(s) 992
NcoI CCATGG 1 cut(s) 694
NlaIII CATG 3 cut(s) 677, 698, 1030
NlaIV GGNNCC 6 cut(s) 8, 112, 224, 630, 873, 993
NsbI TGCGCA 1 cut(s) 130
PagI TCATGA 1 cut(s) 673
PcsI WCGNNNNNNNCGW 3 cut(s) 20, 68, 80
PfeI GAWTC 1 cut(s) 379
Pfl23II CGTACG 1 cut(s) 389
PflFI GACNNNGTC 1 cut(s) 833
PflMI CCANNNNNTGG 1 cut(s) 881
PfoI TCCNGGA 1 cut(s) 880
PleI GAGTC 2 cut(s) 154, 1021
PluTI GGCGCC 1 cut(s) 995
PpsI GAGTC 2 cut(s) 154, 1021
PshBI ATTAAT 1 cut(s) 969
Psp6I CCWGG 2 cut(s) 382, 880
PspFI CCCAGC 4 cut(s) 95, 239, 371, 1008
PspGI CCWGG 2 cut(s) 382, 880
PspLI CGTACG 1 cut(s) 389
PspN4I GGNNCC 6 cut(s) 8, 112, 224, 630, 873, 993
PspPI GGNCC 3 cut(s) 111, 152, 222
PstI CTGCAG 1 cut(s) 912
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 4 cut(s) 333, 457, 628, 871
PsyI GACNNNGTC 1 cut(s) 833
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 4 cut(s) 391, 763, 801, 906
RsaNI GTAC 4 cut(s) 390, 762, 800, 905
SacII CCGCGG 1 cut(s) 753
SaqAI TTAA 2 cut(s) 969, 1065
Sau96I GGNCC 3 cut(s) 111, 152, 222
ScaI AGTACT 2 cut(s) 801, 906
SchI GAGTC 2 cut(s) 154, 1022
ScrFI CCNGG 2 cut(s) 384, 882
SduI GDGCHC 3 cut(s) 686, 931, 1026
SfaNI GCATC 3 cut(s) 42, 499, 724
SfcI CTRYAG 2 cut(s) 687, 908
SfoI GGCGCC 1 cut(s) 993
Sfr303I CCGCGG 1 cut(s) 753
SgrBI CCGCGG 1 cut(s) 753
SinI GGWCC 2 cut(s) 111, 222
SpeI ACTAGT 1 cut(s) 977
Sse9I AATT 4 cut(s) 187, 663, 853, 893
SspDI GGCGCC 1 cut(s) 991
SspMI CTAG 2 cut(s) 591, 978
StyD4I CCNGG 2 cut(s) 382, 880
StyI CCWWGG 3 cut(s) 155, 448, 694
TaaI ACNGT 2 cut(s) 216, 794
TaiI ACGT 3 cut(s) 519, 719, 837
TaqI TCGA 2 cut(s) 23, 83
TasI AATT 4 cut(s) 187, 663, 853, 893
TatI WGTACW 2 cut(s) 799, 904
TauI GCSGC 6 cut(s) 35, 95, 270, 311, 752, 755
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 2 cut(s) 969, 1065
Tru9I TTAA 2 cut(s) 969, 1065
TspDTI ATGAA 4 cut(s) 296, 341, 837, 1030
TspGWI ACGGA 1 cut(s) 407
Tth111I GACNNNGTC 1 cut(s) 833
Van91I CCANNNNNTGG 1 cut(s) 881
VneI GTGCAC 1 cut(s) 927
VpaK11BI GGWCC 2 cut(s) 111, 222
VspI ATTAAT 1 cut(s) 969
XapI RAATTY 1 cut(s) 853
XspI CTAG 2 cut(s) 591, 978
ZraI GACGTC 1 cut(s) 835
ZrmI AGTACT 2 cut(s) 801, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.