Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8442277.1

Orthogroup ID

OG0015126

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1084

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8442277.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 994 bp

agctgcacccaaaacagcagcagtatcgtcttcctcgagcaagacgccgtgctgcgtcaaggtgggtctgaagagaggtccctggactcccgaggaagatgagctcttagctaattacatcaagaaagaaggcgagggccggtggagaaccctcccgaagcgcgccggcctcctccgctgcggcaagagctgccgtctccgctggatgaactacctccgaccttccgtcaagcggggccagatcgccgcagatgaagaagatctcatcctccgcctccaccgcctcctcggcaatagatggtctctgatagctgggaggattccggggcgtacagacaatgagataaagaactactggaacactcacctgagcaaaaagctgatcagtcagggcatagatccaagaacccacaagccactcaatccagatacctcttctgctgaccatgctgctgtcaacaataatggagcagctgcttcgtcatccaagaccaatcagcatcgcggaggcacgagctcaaaccctagccctaaaagtccaattacttcttcatcacctgaggaagcagctcccagtgcgagggaaaatgggtaccatgttaccaatgatgatgatctgggagctatagtccacggagccaacggctacggtaatgttatgacctccaatgactctaatgggtctgcagcaggaatgggaggtctgagaagcaacctactaattggaaatgaggaggatgaagacatgaactgttgcaccgacgacgtcttctcttcgtttttgaactctctgatcaatgaggatccgtttgctgctgcagcagcaggccagcaccattcgcagccgttacaaggaatgcaacatcctaatgggattgcgccacctgctgattcttctgctcaggctttcggtggctgggaatctgcggtgctcatgtcttcctctttcatccagaacgattctcacagggttaatgtcgatcaaacacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

330

Amino Acids

35.42

Weight (kDa)

6.91

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13540
fragaria_vesca	FvH4_3g45450
malus_domestica	MD11G1006500.v1.1 MD11G1007500.v1.1
prunus_persica	Prupe.6G004700_v2.0.a1
pyrus_communis	pycom11g00510
rosa_laevigata	RLG00000037022
rosa_multiflora	Rmu_co8442277.1_g000001 Rmu_sc0011792.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001240
rosa_rugosa	Rorug05G0483600
rosa_samantha	Rh5AG533000 Rh5BG560300 Rh5CG583000 Rh5DG569600
rosa_wichuraiana	Rw5G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	893
AatII	GACGTC	1 cut(s)	769
Acc36I	ACCTGC	1 cut(s)	893
Acc65I	GGTACC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	592
AccII	CGCG	2 cut(s)	163, 505
AciI	CCGC	9 cut(s)	176, 181, 200, 233, 247, 272, 281, 505, 927
AclWI	GGATC	3 cut(s)	393, 798, 811
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	2 cut(s)	45, 766
AfaI	GTAC	2 cut(s)	332, 594
AfiI	CCNNNNNNNGG	3 cut(s)	232, 580, 852
AgsI	TTSAA	1 cut(s)	785
AhdI	GACNNNNNGTC	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
Alw21I	GWGCWC	3 cut(s)	106, 519, 934
Alw26I	GTCTC	2 cut(s)	201, 307
AlwI	GGATC	3 cut(s)	393, 798, 811
Ama87I	CYCGRG	2 cut(s)	35, 90
AoxI	GGCC	4 cut(s)	137, 167, 236, 827
Asp718I	GGTACC	1 cut(s)	592
AspLEI	GCGC	3 cut(s)	163, 165, 881
AspS9I	GGNCC	3 cut(s)	78, 137, 236
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	357, 547
AvaI	CYCGRG	2 cut(s)	35, 90
AvaII	GGWCC	1 cut(s)	78
AxyI	CCTNAGG	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	803
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	2 cut(s)	106, 519
BauI	CACGAG	1 cut(s)	512
BbsI	GAAGAC	4 cut(s)	22, 748, 761, 931
Bbv12I	GWGCWC	3 cut(s)	106, 519, 934
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	4 cut(s)	32, 178, 659, 830
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 460, 494
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	2 cut(s)	382, 793
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	201, 307
BfaI	CTAG	1 cut(s)	526
BfmI	CTRYAG	3 cut(s)	625, 685, 817
BfuAI	ACCTGC	1 cut(s)	893
BglI	GCCNNNNNGGC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	260
Bme1390I	CCNGG	2 cut(s)	83, 325
Bme18I	GGWCC	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	225
BmeT110I	CYCGRG	2 cut(s)	35, 90
BmgT120I	GGNCC	3 cut(s)	78, 137, 236
BmiI	GGNNCC	5 cut(s)	80, 237, 594, 638, 805
BmrFI	CCNGG	2 cut(s)	83, 325
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	509
BmuI	ACTGGG	1 cut(s)	568
BpiI	GAAGAC	4 cut(s)	22, 748, 761, 931
Bpu10I	CCTNAGC	2 cut(s)	369, 901
BpuMI	CCSGG	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	613
BsaHI	GRCGYC	2 cut(s)	45, 766
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	5 cut(s)	81, 91, 287, 324, 632
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 580, 852
Bse118I	RCCGGY	2 cut(s)	139, 165
Bse1I	ACTGG	2 cut(s)	360, 574
Bse21I	CCTNAGG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	613
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	5 cut(s)	81, 91, 287, 324, 632
BseGI	GGATG	6 cut(s)	211, 265, 483, 743, 863, 949
BseJI	GATNNNNATC	1 cut(s)	613
BseLI	CCNNNNNNNGG	3 cut(s)	232, 580, 852
BseMII	CTCAG	4 cut(s)	360, 550, 696, 915
BseNI	ACTGG	2 cut(s)	360, 574
BsePI	GCGCGC	1 cut(s)	161
BseRI	GAGGAG	3 cut(s)	162, 276, 747
BseYI	CCCAGC	2 cut(s)	312, 916
Bsh1236I	CGCG	2 cut(s)	163, 505
BshFI	GGCC	4 cut(s)	139, 169, 238, 829
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	3 cut(s)	106, 519, 934
BsiHKCI	CYCGRG	2 cut(s)	35, 90
BsiSI	CCGG	3 cut(s)	140, 166, 324
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	3 cut(s)	232, 580, 852
BsmAI	GTCTC	2 cut(s)	201, 307
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	4 cut(s)	139, 169, 238, 829
Bso31I	GGTCTC	1 cut(s)	307
BsoBI	CYCGRG	2 cut(s)	35, 90
Bsp1286I	GDGCHC	3 cut(s)	106, 519, 934
Bsp143I	GATC	8 cut(s)	241, 260, 382, 398, 614, 793, 803, 980
BspACI	CCGC	9 cut(s)	176, 181, 200, 233, 247, 272, 281, 505, 927
BspANI	GGCC	4 cut(s)	139, 169, 238, 829
BspCNI	CTCAG	4 cut(s)	361, 551, 697, 914
BspFNI	CGCG	2 cut(s)	163, 505
BspLI	GGNNCC	5 cut(s)	80, 237, 594, 638, 805
BspMAI	CTGCAG	2 cut(s)	689, 821
BspMI	ACCTGC	1 cut(s)	893
BspPI	GGATC	3 cut(s)	393, 798, 811
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	307
BsrFI	RCCGGY	2 cut(s)	139, 165
BsrI	ACTGG	2 cut(s)	360, 574
BssAI	RCCGGY	2 cut(s)	139, 165
BssECI	CCNNGG	5 cut(s)	81, 91, 287, 324, 632
BssHII	GCGCGC	1 cut(s)	161
BssMI	GATC	8 cut(s)	241, 260, 382, 398, 614, 793, 803, 980
BssNI	GRCGYC	2 cut(s)	45, 766
BssSI	CACGAG	1 cut(s)	512
Bst2BI	CACGAG	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	651, 753
Bst6I	CTCTTC	3 cut(s)	66, 440, 779
BstACI	GRCGYC	2 cut(s)	45, 766
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstC8I	GCNNGC	4 cut(s)	163, 167, 827, 831
BstDEI	CTNAG	5 cut(s)	107, 369, 559, 705, 901
BstDSI	CCRYGG	1 cut(s)	632
BstF5I	GGATG	6 cut(s)	211, 265, 483, 743, 863, 949
BstFNI	CGCG	2 cut(s)	163, 505
BstHHI	GCGC	3 cut(s)	163, 165, 881
BstKTI	GATC	8 cut(s)	244, 263, 385, 401, 617, 796, 806, 983
BstMAI	GTCTC	2 cut(s)	201, 307
BstMBI	GATC	8 cut(s)	241, 260, 382, 398, 614, 793, 803, 980
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	81, 323
BstSFI	CTRYAG	3 cut(s)	625, 685, 817
BstUI	CGCG	2 cut(s)	163, 505
BstV2I	GAAGAC	4 cut(s)	22, 748, 761, 931
BstX2I	RGATCY	3 cut(s)	260, 398, 803
BstYI	RGATCY	3 cut(s)	260, 398, 803
Bsu36I	CCTNAGG	1 cut(s)	559
BsuRI	GGCC	4 cut(s)	139, 169, 238, 829
BtgI	CCRYGG	1 cut(s)	632
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	6 cut(s)	211, 265, 483, 743, 863, 949
BtsIMutI	CAGTG	1 cut(s)	581
BveI	ACCTGC	1 cut(s)	893
Cac8I	GCNNGC	4 cut(s)	163, 167, 827, 831
CfoI	GCGC	3 cut(s)	163, 165, 881
Cfr10I	RCCGGY	2 cut(s)	139, 165
Cfr13I	GGNCC	3 cut(s)	78, 137, 236
CseI	GACGC	2 cut(s)	44, 53
Csp6I	GTAC	2 cut(s)	331, 593
CviAII	CATG	4 cut(s)	447, 597, 746, 935
CviQI	GTAC	2 cut(s)	331, 593
DdeI	CTNAG	5 cut(s)	107, 369, 559, 705, 901
DpnI	GATC	8 cut(s)	243, 262, 384, 400, 616, 795, 805, 982
DpnII	GATC	8 cut(s)	241, 260, 382, 398, 614, 793, 803, 980
DriI	GACNNNNNGTC	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	66, 440, 779
Eam1105I	GACNNNNNGTC	1 cut(s)	225
EarI	CTCTTC	3 cut(s)	66, 440, 779
EciI	GGCGGA	1 cut(s)	261
Ecl136II	GAGCTC	2 cut(s)	104, 517
Eco24I	GRGCYC	2 cut(s)	106, 519
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	78
Eco53kI	GAGCTC	2 cut(s)	104, 517
Eco57I	CTGAAG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	559
Eco88I	CYCGRG	2 cut(s)	35, 90
EcoICRI	GAGCTC	2 cut(s)	104, 517
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	81
EcoT38I	GRGCYC	2 cut(s)	106, 519
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	4 cut(s)	450, 600, 749, 938
FaiI	YATR	7 cut(s)	396, 448, 598, 627, 660, 747, 936
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	4 cut(s)	446, 596, 745, 934
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	2 cut(s)	382, 793
FokI	GGATG	6 cut(s)	218, 252, 470, 750, 850, 936
FriOI	GRGCYC	2 cut(s)	106, 519
FspBI	CTAG	1 cut(s)	526
GlaI	GCGC	3 cut(s)	162, 164, 880
GsaI	CCCAGC	2 cut(s)	316, 920
HaeIII	GGCC	4 cut(s)	139, 169, 238, 829
HapII	CCGG	3 cut(s)	140, 166, 324
HgaI	GACGC	2 cut(s)	44, 53
HhaI	GCGC	3 cut(s)	163, 165, 881
Hin1I	GRCGYC	2 cut(s)	45, 766
Hin1II	CATG	4 cut(s)	450, 600, 749, 938
Hin6I	GCGC	3 cut(s)	161, 163, 879
HinP1I	GCGC	3 cut(s)	161, 163, 879
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HinfI	GANTC	6 cut(s)	86, 320, 672, 891, 921, 960
HpaII	CCGG	3 cut(s)	140, 166, 324
HphI	GGTGA	2 cut(s)	357, 547
Hpy166II	GTNNAC	2 cut(s)	458, 632
Hpy188I	TCNGA	5 cut(s)	70, 219, 307, 706, 793
Hpy188III	TCNNGA	5 cut(s)	90, 122, 155, 426, 953
Hpy8I	GTNNAC	2 cut(s)	458, 632
Hpy99I	CGWCG	2 cut(s)	765, 768
HpyAV	CCTTC	2 cut(s)	123, 232
HpyCH4III	ACNGT	2 cut(s)	651, 753
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	5 cut(s)	6, 687, 757, 819, 860
HpyF3I	CTNAG	5 cut(s)	107, 369, 559, 705, 901
HpySE526I	ACGT	1 cut(s)	766
Hsp92I	GRCGYC	2 cut(s)	45, 766
Hsp92II	CATG	4 cut(s)	450, 600, 749, 938
HspAI	GCGC	3 cut(s)	161, 163, 879
KpnI	GGTACC	1 cut(s)	596
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Ksp22I	TGATCA	2 cut(s)	382, 793
Kzo9I	GATC	8 cut(s)	241, 260, 382, 398, 614, 793, 803, 980
LmnI	GCTCC	4 cut(s)	468, 575, 621, 636
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	1 cut(s)	526
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	2 cut(s)	599, 847
MalI	GATC	8 cut(s)	243, 262, 384, 400, 616, 795, 805, 982
MboI	GATC	8 cut(s)	241, 260, 382, 398, 614, 793, 803, 980
MflI	RGATCY	3 cut(s)	260, 398, 803
MhlI	GDGCHC	3 cut(s)	106, 519, 934
MluCI	AATT	3 cut(s)	113, 541, 721
MlyI	GAGTC	2 cut(s)	80, 666
MmeI	TCCRAC	1 cut(s)	242
MroNI	GCCGGC	1 cut(s)	165
MseI	TTAA	1 cut(s)	973
MslI	CAYNNNNRTG	1 cut(s)	868
MspA1I	CMGCKG	3 cut(s)	178, 202, 474
MspI	CCGG	3 cut(s)	140, 166, 324
MspR9I	CCNGG	2 cut(s)	83, 325
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	2 cut(s)	163, 505
NaeI	GCCGGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	8 cut(s)	241, 260, 382, 398, 614, 793, 803, 980
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	4 cut(s)	450, 600, 749, 938
NlaIV	GGNNCC	5 cut(s)	80, 237, 594, 638, 805
NmeAIII	GCCGAG	1 cut(s)	268
PaeR7I	CTCGAG	1 cut(s)	35
PaqCI	CACCTGC	1 cut(s)	893
PauI	GCGCGC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	862
PdiI	GCCGGC	1 cut(s)	167
PfeI	GAWTC	4 cut(s)	320, 891, 921, 960
PflFI	GACNNNGTC	1 cut(s)	765
PleI	GAGTC	2 cut(s)	80, 666
PpsI	GAGTC	2 cut(s)	80, 666
PpuMI	RGGWCCY	1 cut(s)	78
Psp124BI	GAGCTC	2 cut(s)	106, 519
Psp5II	RGGWCCY	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	81
PspFI	CCCAGC	2 cut(s)	312, 916
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	5 cut(s)	80, 237, 594, 638, 805
PspPI	GGNCC	3 cut(s)	78, 137, 236
PspPPI	RGGWCCY	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	35
PstI	CTGCAG	2 cut(s)	689, 821
PsuI	RGATCY	3 cut(s)	260, 398, 803
PsyI	GACNNNGTC	1 cut(s)	765
PteI	GCGCGC	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	474
RsaI	GTAC	2 cut(s)	332, 594
RsaNI	GTAC	2 cut(s)	331, 593
RseI	CAYNNNNRTG	1 cut(s)	868
SacI	GAGCTC	2 cut(s)	106, 519
SaqAI	TTAA	1 cut(s)	973
Sau3AI	GATC	8 cut(s)	241, 260, 382, 398, 614, 793, 803, 980
Sau96I	GGNCC	3 cut(s)	78, 137, 236
SchI	GAGTC	2 cut(s)	80, 666
ScrFI	CCNGG	2 cut(s)	83, 325
SduI	GDGCHC	3 cut(s)	106, 519, 934
SfaNI	GCATC	1 cut(s)	509
SfcI	CTRYAG	3 cut(s)	625, 685, 817
Sfr274I	CTCGAG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	868
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	113, 541, 721
SsiI	CCGC	9 cut(s)	176, 181, 200, 233, 247, 272, 281, 505, 927
SspMI	CTAG	1 cut(s)	526
SstI	GAGCTC	2 cut(s)	106, 519
StyD4I	CCNGG	2 cut(s)	81, 323
TaaI	ACNGT	2 cut(s)	651, 753
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	2 cut(s)	36, 979
TasI	AATT	3 cut(s)	113, 541, 721
TauI	GCSGC	2 cut(s)	184, 249
TfiI	GAWTC	4 cut(s)	320, 891, 921, 960
Tru1I	TTAA	1 cut(s)	973
Tru9I	TTAA	1 cut(s)	973
TscAI	CASTG	1 cut(s)	581
TspDTI	ATGAA	6 cut(s)	222, 268, 541, 754, 762, 938
TspGWI	ACGGA	3 cut(s)	215, 649, 796
TspRI	CASTG	1 cut(s)	581
Tth111I	GACNNNGTC	1 cut(s)	765
VpaK11BI	GGWCC	1 cut(s)	78
XhoI	CTCGAG	1 cut(s)	35
XspI	CTAG	1 cut(s)	526
ZraI	GACGTC	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.