Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Reverse (-)

4022684 .. 4025138

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTTTACTCTCAAAACCCTTCATTTACTTCCTCTACTTGCTTCTGTTCTCCAATCTTGAGCTCATCATCCCAGTTGCTGAATCTGCCACTGATGTGACCTCCTTGGTCTACAAGGGTTGTGCAAAGCAGACCTTTTCAGATCCAACTGGGGTTTACTCCCAATCCCTCTCAGCTCTTTTTGGGTCTCTGGTTCAACAATCCACCAAGTCCAAGTTTTTCAAGACCAACTCAGGCAGTGGCCAAACCACCATCTCTGGTCTCTTTCAATGCAGAAGTGACCTCAGCAACTCTGATTGCTACAGCTGTGTGAGTAAACTGCCCCAAATGGCTGACAGTCTCTGTGGCAAAACCATTGCTGCTAGAGTTCAGCTGATTGGGTGCTACATGCTCTATGAGGTTTCTGGGTTTGCTCAAATTTCAGGGATGGAAATGTTGTACAAGACTTGTGGTGGGACAAACATTGCAGGGTCTGGGTTTGAAGAGAGAAGGGACACTGCTTTCACTGTTTTGGAGAATGGTGTGGTTAGTGGTCATGGGTTTTATACCACAAATTACCAACAAGTCTATGTCTTGGGTCAGTGTCAAGGAGATGTGGGTGACTCAGATTGTGGTGAGTGTATGAAGAGTGCTGTGCAGAGAGCTCAAGTTGAATGTGGGAATTCCATTTCAGGGCAAATCTATCTCCATAAGTGCTTTGTGAGTTACAGTTACTATCCAAATGGGGTCCCCAGAAGGTCATCTTCATCTCAGTCATCAACATCATCTTCTTCATCTTCATCAGGGTCAAATACAGGGAAGACAGTGGCTATTATTTTAGGAGGAGCAGCTGGAGTTGGATTCCTAGTCATATTCTTGTTGTTTGCCAGAAATTTGATGAAGAAGCATGATGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

300

Amino Acids

32.09

Weight (kDa)

7.91

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	41 - 133	9e-15	Salt stress response/antifungal
Stress-antifung	PF01657	153 - 238	1.9e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	3 cut(s)	417, 661, 871
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	672
AgsI	TTSAA	5 cut(s)	197, 223, 269, 482, 653
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	6 cut(s)	64, 176, 306, 373, 644, 830
AluI	AGCT	6 cut(s)	64, 176, 306, 373, 644, 830
Alw21I	GWGCWC	2 cut(s)	66, 646
Alw26I	GTCTC	3 cut(s)	192, 266, 344
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	3 cut(s)	80, 342, 473
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	359, 827
ApoI	RAATTY	3 cut(s)	417, 661, 871
AspS9I	GGNCC	1 cut(s)	727
AsuHPI	GGTGA	2 cut(s)	611, 626
AvaII	GGWCC	1 cut(s)	727
BalI	TGGCCA	1 cut(s)	243
BanII	GRGCYC	2 cut(s)	66, 646
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	2 cut(s)	66, 646
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	346, 839
BccI	CCATC	2 cut(s)	260, 421
BcoDI	GTCTC	3 cut(s)	192, 266, 344
BfaI	CTAG	2 cut(s)	363, 845
BfmI	CTRYAG	1 cut(s)	301
BisI	GCNGC	2 cut(s)	360, 828
BlsI	GCNGC	2 cut(s)	361, 829
Bme18I	GGWCC	1 cut(s)	727
BmgT120I	GGNCC	1 cut(s)	727
BmiI	GGNNCC	2 cut(s)	728, 729
BmrI	ACTGGG	2 cut(s)	68, 159
BmuI	ACTGGG	2 cut(s)	68, 159
BpiI	GAAGAC	1 cut(s)	806
BpmI	CTGGAG	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	2 cut(s)	80, 630
BsaI	GGTCTC	2 cut(s)	192, 266
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	672
Bse1I	ACTGG	2 cut(s)	74, 154
Bse3DI	GCAATG	2 cut(s)	354, 462
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	69, 432
BseLI	CCNNNNNNNGG	1 cut(s)	672
BseMI	GCAATG	2 cut(s)	354, 462
BseMII	CTCAG	5 cut(s)	186, 246, 298, 618, 764
BseNI	ACTGG	2 cut(s)	74, 154
BseRI	GAGGAG	1 cut(s)	837
BseXI	GCAGC	2 cut(s)	346, 839
BsgI	GTGCAG	1 cut(s)	656
BshFI	GGCC	1 cut(s)	243
BsiHKAI	GWGCWC	2 cut(s)	66, 646
BslFI	GGGAC	3 cut(s)	469, 506, 713
BslI	CCNNNNNNNGG	1 cut(s)	672
BsmAI	GTCTC	3 cut(s)	192, 266, 344
BsmFI	GGGAC	3 cut(s)	469, 506, 713
BsnI	GGCC	1 cut(s)	243
Bso31I	GGTCTC	2 cut(s)	192, 266
Bsp1286I	GDGCHC	2 cut(s)	66, 646
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	5 cut(s)	185, 245, 297, 617, 763
BspLI	GGNNCC	2 cut(s)	728, 729
BspPI	GGATC	1 cut(s)	137
BspTNI	GGTCTC	2 cut(s)	192, 266
BsrDI	GCAATG	2 cut(s)	354, 462
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	74, 154
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	4 cut(s)	338, 508, 710, 805
Bst6I	CTCTTC	2 cut(s)	477, 620
BstAUI	TGTACA	1 cut(s)	438
BstDEI	CTNAG	5 cut(s)	172, 232, 284, 604, 750
BstF5I	GGATG	2 cut(s)	69, 432
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	3 cut(s)	192, 266, 344
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	346, 839
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	69, 432
BtsI	GCAGTG	2 cut(s)	244, 495
BtsIMutI	CAGTG	6 cut(s)	90, 244, 495, 504, 587, 810
CaiI	CAGNNNCTG	3 cut(s)	80, 342, 473
Cfr13I	GGNCC	1 cut(s)	727
Csp6I	GTAC	1 cut(s)	439
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	3 cut(s)	388, 536, 887
CviJI	RGCY	9 cut(s)	64, 176, 243, 306, 332, 373, 644, 809, 830
CviKI_1	RGCY	9 cut(s)	64, 176, 243, 306, 332, 373, 644, 809, 830
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	5 cut(s)	172, 232, 284, 604, 750
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	477, 620
EarI	CTCTTC	2 cut(s)	477, 620
Ecl136II	GAGCTC	2 cut(s)	64, 644
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	2 cut(s)	66, 646
Eco31I	GGTCTC	2 cut(s)	192, 266
Eco47I	GGWCC	1 cut(s)	727
Eco53kI	GAGCTC	2 cut(s)	64, 644
EcoICRI	GAGCTC	2 cut(s)	64, 644
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRI	GAATTC	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	66, 646
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	391, 539, 890
FaiI	YATR	9 cut(s)	389, 396, 537, 546, 570, 623, 690, 851, 888
FalI	AAGNNNNNCTT	4 cut(s)	119, 151, 727, 759
FaqI	GGGAC	3 cut(s)	469, 506, 713
FatI	CATG	3 cut(s)	387, 535, 886
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	360, 828
FokI	GGATG	2 cut(s)	56, 439
FriOI	GRGCYC	2 cut(s)	66, 646
Fsp4HI	GCNGC	2 cut(s)	360, 828
FspBI	CTAG	2 cut(s)	363, 845
GluI	GCNGC	2 cut(s)	360, 828
GsuI	CTGGAG	1 cut(s)	852
HaeIII	GGCC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	391, 539, 890
HinfI	GANTC	3 cut(s)	83, 602, 840
HphI	GGTGA	2 cut(s)	611, 626
Hpy166II	GTNNAC	4 cut(s)	8, 112, 157, 317
Hpy188I	TCNGA	3 cut(s)	142, 295, 607
Hpy188III	TCNNGA	2 cut(s)	59, 223
Hpy8I	GTNNAC	4 cut(s)	8, 112, 157, 317
HpyAV	CCTTC	3 cut(s)	31, 483, 729
HpyCH4III	ACNGT	4 cut(s)	338, 508, 710, 805
HpyCH4V	TGCA	4 cut(s)	125, 273, 467, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	5 cut(s)	172, 232, 284, 604, 750
Hsp92II	CATG	3 cut(s)	391, 539, 890
KflI	GGGWCCC	1 cut(s)	727
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	824
Lsp1109I	GCAGC	2 cut(s)	346, 839
MaeI	CTAG	2 cut(s)	363, 845
MaeIII	GTNAC	5 cut(s)	97, 278, 599, 704, 710
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	8 cut(s)	494, 637, 735, 759, 762, 768, 811, 892
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	66, 646
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	4 cut(s)	417, 553, 661, 871
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	2 cut(s)	170, 817
MnlI	CCTC	6 cut(s)	44, 112, 179, 293, 391, 815
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	3 cut(s)	306, 373, 830
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	3 cut(s)	391, 539, 890
NlaIV	GGNNCC	2 cut(s)	728, 729
NmuCI	GTSAC	3 cut(s)	97, 278, 599
NspI	RCATGY	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	83, 840
PkrI	GCNGC	2 cut(s)	361, 829
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PpuMI	RGGWCCY	1 cut(s)	727
Psp124BI	GAGCTC	2 cut(s)	66, 646
Psp5II	RGGWCCY	1 cut(s)	727
PspN4I	GGNNCC	2 cut(s)	728, 729
PspPI	GGNCC	1 cut(s)	727
PspPPI	RGGWCCY	1 cut(s)	727
PstNI	CAGNNNCTG	3 cut(s)	80, 342, 473
PsuI	RGATCY	1 cut(s)	142
PvuII	CAGCTG	3 cut(s)	306, 373, 830
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	2 cut(s)	66, 646
SatI	GCNGC	2 cut(s)	360, 828
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	727
SchI	GAGTC	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	66, 646
SfcI	CTRYAG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	59, 645
SmoI	CTYRAG	2 cut(s)	59, 645
Sse9I	AATT	4 cut(s)	417, 553, 661, 871
SspMI	CTAG	2 cut(s)	363, 845
SstI	GAGCTC	2 cut(s)	66, 646
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	338, 508, 710, 805
TasI	AATT	4 cut(s)	417, 553, 661, 871
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	83, 840
TscAI	CASTG	6 cut(s)	97, 244, 502, 511, 587, 810
TseFI	GTSAC	3 cut(s)	97, 278, 599
TseI	GCWGC	2 cut(s)	359, 827
Tsp45I	GTSAC	3 cut(s)	97, 278, 599
TspDTI	ATGAA	6 cut(s)	13, 638, 735, 762, 768, 893
TspRI	CASTG	6 cut(s)	97, 244, 502, 511, 587, 810
VpaK11BI	GGWCC	1 cut(s)	727
XapI	RAATTY	3 cut(s)	417, 661, 871
XceI	RCATGY	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	2 cut(s)	363, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.