Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Forward (+)

44485396 .. 44491899

Gene Structure 6504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0357900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTAGTCCCACCTAGCATGGAGGGTACTCTACGATCAACTGAGCAAGGAGAAATGGTACGGTCAAAATTTGGGCTACCACAGATTGCAGTTAGACAGCTAGAGGTGTATTGCTTGCAACGTTGCGTCCACCACACCCTCCTCAAGAACAAAAGTAGCGTAACCACATGGAGGAGATCTCAAAGATCAGTTGTCAGAATTTACTGGAGCGTAGTCTACAAAAATCCAGAATTCCTTACTTACTTCCAAGAGGCTACATCCCAGGCTGAGCTTGGCTTCCTCAACATAGGAAGCCGCCCCTCAAGAAGAAAGAGCTCTACTGGAATTGGGCATCTTCGGGCAATTCCATGGGTGTTTGCATGGACTCAAACTAGATTTGTTCTTCCAGCTTGGGTTGGAGTTGAACCAGCTTTAAGGTGGGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

142

Amino Acids

16.38

Weight (kDa)

10.67

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	6 - 139	9.6e-46	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	1 cut(s)	295
AclI	AACGTT	1 cut(s)	121
AcsI	RAATTY	3 cut(s)	68, 198, 230
AfaI	GTAC	2 cut(s)	28, 60
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	100, 271, 315, 389, 410
AluI	AGCT	5 cut(s)	100, 271, 315, 389, 410
Alw21I	GWGCWC	1 cut(s)	317
ApoI	RAATTY	3 cut(s)	68, 198, 230
BanII	GRGCYC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	263
BfaI	CTAG	4 cut(s)	5, 15, 101, 372
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	1 cut(s)	295
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	296
Bme1390I	CCNGG	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	340
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	226
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	128, 286
BsaJI	CCNNGG	2 cut(s)	261, 347
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	209, 325
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	261, 347
BseGI	GGATG	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	33, 258
BseNI	ACTGG	2 cut(s)	209, 325
BseRI	GAGGAG	2 cut(s)	131, 187
BsiHKAI	GWGCWC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	35, 176, 185
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	347
BspACI	CCGC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	34, 259
BsrI	ACTGG	2 cut(s)	209, 325
BssECI	CCNNGG	2 cut(s)	261, 347
BssMI	GATC	3 cut(s)	35, 176, 185
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	42, 267
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	257
BstKTI	GATC	3 cut(s)	38, 179, 188
BstMBI	GATC	3 cut(s)	35, 176, 185
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	116
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	27, 59
CviAII	CATG	4 cut(s)	19, 168, 348, 360
CviQI	GTAC	2 cut(s)	27, 59
DdeI	CTNAG	2 cut(s)	42, 267
DpnI	GATC	3 cut(s)	37, 178, 187
DpnII	GATC	3 cut(s)	35, 176, 185
Ecl136II	GAGCTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	4 cut(s)	22, 171, 351, 363
FaiI	YATR	5 cut(s)	20, 169, 287, 349, 361
FatI	CATG	4 cut(s)	18, 167, 347, 359
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	295
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	295
FspBI	CTAG	4 cut(s)	5, 15, 101, 372
GluI	GCNGC	1 cut(s)	295
GsuI	CTGGAG	1 cut(s)	226
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	22, 171, 351, 363
HinfI	GANTC	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	130, 217
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	3 cut(s)	145, 227, 303
Hpy8I	GTNNAC	2 cut(s)	130, 217
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	89, 118, 359
HpyF3I	CTNAG	2 cut(s)	42, 267
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	4 cut(s)	22, 171, 351, 363
Kzo9I	GATC	3 cut(s)	35, 176, 185
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	7 cut(s)	190, 240, 248, 275, 306, 399, 420
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	4 cut(s)	5, 15, 101, 372
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	3 cut(s)	37, 178, 187
MboI	GATC	3 cut(s)	35, 176, 185
MboII	GAAGA	3 cut(s)	318, 326, 374
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	5 cut(s)	68, 198, 230, 324, 342
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	8 cut(s)	16, 97, 149, 152, 165, 244, 290, 310
MseI	TTAA	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	3 cut(s)	35, 176, 185
NlaIII	CATG	4 cut(s)	22, 171, 351, 363
PkrI	GCNGC	1 cut(s)	296
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	317
Psp1406I	AACGTT	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	2 cut(s)	28, 60
RsaNI	GTAC	2 cut(s)	27, 59
SacI	GAGCTC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	3 cut(s)	35, 176, 185
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	9 cut(s)	16, 102, 108, 124, 273, 317, 391, 412, 419
SfaNI	GCATC	1 cut(s)	340
SmlI	CTYRAG	2 cut(s)	143, 301
SmoI	CTYRAG	2 cut(s)	143, 301
Sse9I	AATT	5 cut(s)	68, 198, 230, 324, 342
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	4 cut(s)	5, 15, 101, 372
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	124
TasI	AATT	5 cut(s)	68, 198, 230, 324, 342
TauI	GCSGC	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
XapI	RAATTY	3 cut(s)	68, 198, 230
XcmI	CCANNNNNNNNNTGG	2 cut(s)	269, 414
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	4 cut(s)	5, 15, 101, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.