Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Reverse (-)

11946325 .. 11950090

Gene Structure 3766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG063500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTTTACTCTCAAAACCCTTCATTTTCTTCCTCTACTTGCTTCTGTTCTCCAATCTTGAGCTCATCATCCCAGTTGCTGAATCTGCCACTGATATGACCACCATGGTGTACAAAGGTTGTGCAAAGCAGACCTTTTCAGATCCAACTGGGGTTTACTCCCAATCCCTCTCTGCCCTGTTTGGGTCTCTGGTTCAACAGTCCACCAAGGCCAAGTTTTTCAAGACCAACTCAGGCAGTGGCCAAACCACCATCTCCGGTCTCTTTCAATGCAGAGGTGACCTCAGCAACTCTGATTGCTACAGCTGTGTGAGTAAACTCCCCCAAATGGTTAACAGTCTCTGTGGCAAAACCATTGCTGCTAGAGTTCAGCTAATTGGTTGCTACATGCTCTATGAGATTTCTGGGTTTGCCCAAATTTCAGGGATGGAAATGTTGTACAAGACTTGTGGGGGAACAAACATTGCAGGGTCTGGGTTTGAAGAGAGAAGGGACACTGCTTTCACTGTCTTGGAGAATGGTGTGGTTAGTGGTCATGGGTTTTATACCACAAATTACCAACAAGTCTATGTCTTGGGTCAGTGTCAAGGAGATGTGGGTGACTCAGATTGTGGTGAGTGTATGAAGAGTGCAGTGCAGAGAGCTCAAGTTGAATGTGGGAGTTCCATTTCAGGCCAAATCTATCTCCATAAGTGCTTTGTGAGTTACAGTTACTATCCAAATGGGGTCCCCAGAAGGTCATCTTCATCTCAATCATCATCATCATCCTCTTCATCTTCATCAGGGTCAAATACAGGGAAGACAGTGGCTATTATTTTAGGAGGAGCAGCTGGAGTTGGATTCCTAGTCATATTCTTGTTGTTTGCCAGAAATTTGATGAAGAAGCATGATGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

299

Amino Acids

32.09

Weight (kDa)

8.2

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	41 - 133	2.8e-15	Salt stress response/antifungal
Stress-antifung	PF01657	153 - 238	4.6e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	417, 871
AfaI	GTAC	2 cut(s)	113, 440
AfiI	CCNNNNNNNGG	2 cut(s)	183, 328
AgsI	TTSAA	5 cut(s)	197, 223, 269, 482, 653
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	5 cut(s)	64, 306, 373, 644, 830
AluI	AGCT	5 cut(s)	64, 306, 373, 644, 830
Alw21I	GWGCWC	2 cut(s)	66, 646
Alw26I	GTCTC	3 cut(s)	192, 266, 344
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	3 cut(s)	80, 342, 473
AoxI	GGCC	3 cut(s)	210, 241, 673
ApeKI	GCWGC	2 cut(s)	359, 827
ApoI	RAATTY	2 cut(s)	417, 871
AspS9I	GGNCC	1 cut(s)	727
AsuHPI	GGTGA	3 cut(s)	290, 611, 626
AvaII	GGWCC	1 cut(s)	727
BalI	TGGCCA	1 cut(s)	243
BanII	GRGCYC	2 cut(s)	66, 646
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	2 cut(s)	66, 646
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	346, 839
BccI	CCATC	2 cut(s)	260, 421
BcoDI	GTCTC	3 cut(s)	192, 266, 344
BfaI	CTAG	2 cut(s)	363, 845
BfmI	CTRYAG	1 cut(s)	301
BisI	GCNGC	2 cut(s)	360, 828
BlsI	GCNGC	2 cut(s)	361, 829
Bme18I	GGWCC	1 cut(s)	727
BmgT120I	GGNCC	1 cut(s)	727
BmiI	GGNNCC	2 cut(s)	728, 729
BmrI	ACTGGG	2 cut(s)	68, 159
BmuI	ACTGGG	2 cut(s)	68, 159
BpiI	GAAGAC	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BpmI	CTGGAG	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	2 cut(s)	80, 630
BsaI	GGTCTC	2 cut(s)	192, 266
BsaJI	CCNNGG	2 cut(s)	105, 207
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 328
Bse1I	ACTGG	2 cut(s)	74, 154
Bse3DI	GCAATG	2 cut(s)	354, 462
BseDI	CCNNGG	2 cut(s)	105, 207
BseGI	GGATG	3 cut(s)	69, 432, 764
BseLI	CCNNNNNNNGG	2 cut(s)	183, 328
BseMI	GCAATG	2 cut(s)	354, 462
BseMII	CTCAG	3 cut(s)	246, 298, 618
BseNI	ACTGG	2 cut(s)	74, 154
BseRI	GAGGAG	1 cut(s)	837
BseXI	GCAGC	2 cut(s)	346, 839
BsgI	GTGCAG	2 cut(s)	651, 656
BshFI	GGCC	3 cut(s)	212, 243, 675
BsiHKAI	GWGCWC	2 cut(s)	66, 646
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	2 cut(s)	506, 713
BslI	CCNNNNNNNGG	2 cut(s)	183, 328
BsmAI	GTCTC	3 cut(s)	192, 266, 344
BsmFI	GGGAC	2 cut(s)	506, 713
BsnI	GGCC	3 cut(s)	212, 243, 675
Bso31I	GGTCTC	2 cut(s)	192, 266
Bsp1286I	GDGCHC	2 cut(s)	66, 646
Bsp1407I	TGTACA	2 cut(s)	111, 438
Bsp143I	GATC	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	3 cut(s)	212, 243, 675
BspCNI	CTCAG	3 cut(s)	245, 297, 617
BspLI	GGNNCC	2 cut(s)	728, 729
BspPI	GGATC	1 cut(s)	137
BspTNI	GGTCTC	2 cut(s)	192, 266
BsrDI	GCAATG	2 cut(s)	354, 462
BsrGI	TGTACA	2 cut(s)	111, 438
BsrI	ACTGG	2 cut(s)	74, 154
BssECI	CCNNGG	2 cut(s)	105, 207
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	2 cut(s)	105, 207
Bst4CI	ACNGT	5 cut(s)	201, 338, 508, 710, 805
Bst6I	CTCTTC	3 cut(s)	477, 620, 775
BstAUI	TGTACA	2 cut(s)	111, 438
BstDEI	CTNAG	3 cut(s)	232, 284, 604
BstDSI	CCRYGG	1 cut(s)	105
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	3 cut(s)	69, 432, 764
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	3 cut(s)	192, 266, 344
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	346, 839
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	212, 243, 675
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	69, 432, 764
BtsI	GCAGTG	3 cut(s)	244, 495, 639
BtsIMutI	CAGTG	7 cut(s)	90, 244, 495, 504, 587, 639, 810
CaiI	CAGNNNCTG	3 cut(s)	80, 342, 473
Cfr13I	GGNCC	1 cut(s)	727
Csp6I	GTAC	2 cut(s)	112, 439
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	4 cut(s)	106, 388, 536, 887
CviJI	RGCY	9 cut(s)	64, 212, 243, 306, 373, 644, 675, 809, 830
CviKI_1	RGCY	9 cut(s)	64, 212, 243, 306, 373, 644, 675, 809, 830
CviQI	GTAC	2 cut(s)	112, 439
DdeI	CTNAG	3 cut(s)	232, 284, 604
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	3 cut(s)	477, 620, 775
EarI	CTCTTC	3 cut(s)	477, 620, 775
Ecl136II	GAGCTC	2 cut(s)	64, 644
Eco130I	CCWWGG	2 cut(s)	105, 207
Eco24I	GRGCYC	2 cut(s)	66, 646
Eco31I	GGTCTC	2 cut(s)	192, 266
Eco47I	GGWCC	1 cut(s)	727
Eco53kI	GAGCTC	2 cut(s)	64, 644
Eco91I	GGTNACC	1 cut(s)	278
EcoICRI	GAGCTC	2 cut(s)	64, 644
EcoO109I	RGGNCCY	1 cut(s)	727
EcoO65I	GGTNACC	1 cut(s)	278
EcoT14I	CCWWGG	2 cut(s)	105, 207
EcoT38I	GRGCYC	2 cut(s)	66, 646
ErhI	CCWWGG	2 cut(s)	105, 207
FaeI	CATG	4 cut(s)	109, 391, 539, 890
FalI	AAGNNNNNCTT	4 cut(s)	119, 151, 727, 759
FaqI	GGGAC	2 cut(s)	506, 713
FatI	CATG	4 cut(s)	105, 387, 535, 886
Fnu4HI	GCNGC	2 cut(s)	360, 828
FokI	GGATG	3 cut(s)	56, 439, 751
FriOI	GRGCYC	2 cut(s)	66, 646
Fsp4HI	GCNGC	2 cut(s)	360, 828
FspBI	CTAG	2 cut(s)	363, 845
GluI	GCNGC	2 cut(s)	360, 828
GsuI	CTGGAG	1 cut(s)	852
HaeIII	GGCC	3 cut(s)	212, 243, 675
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	4 cut(s)	109, 391, 539, 890
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	3 cut(s)	83, 602, 840
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	3 cut(s)	290, 611, 626
Hpy166II	GTNNAC	6 cut(s)	8, 112, 157, 204, 317, 334
Hpy188I	TCNGA	3 cut(s)	142, 295, 607
Hpy188III	TCNNGA	2 cut(s)	59, 223
Hpy8I	GTNNAC	6 cut(s)	8, 112, 157, 204, 317, 334
HpyAV	CCTTC	3 cut(s)	31, 483, 729
HpyCH4III	ACNGT	5 cut(s)	201, 338, 508, 710, 805
HpyCH4V	TGCA	5 cut(s)	125, 273, 467, 632, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	3 cut(s)	232, 284, 604
Hsp92II	CATG	4 cut(s)	109, 391, 539, 890
KflI	GGGWCCC	1 cut(s)	727
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	824
Lsp1109I	GCAGC	2 cut(s)	346, 839
MaeI	CTAG	2 cut(s)	363, 845
MaeIII	GTNAC	4 cut(s)	278, 599, 704, 710
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	8 cut(s)	22, 494, 637, 735, 762, 768, 811, 892
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	66, 646
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	4 cut(s)	375, 417, 553, 871
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	2 cut(s)	170, 817
MnlI	CCTC	6 cut(s)	44, 179, 269, 293, 778, 815
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	2 cut(s)	95, 107
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	306, 830
MspI	CCGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	4 cut(s)	109, 391, 539, 890
NlaIV	GGNNCC	2 cut(s)	728, 729
NmuCI	GTSAC	2 cut(s)	278, 599
NspI	RCATGY	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	83, 840
PkrI	GCNGC	2 cut(s)	361, 829
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PpuMI	RGGWCCY	1 cut(s)	727
Psp124BI	GAGCTC	2 cut(s)	66, 646
Psp5II	RGGWCCY	1 cut(s)	727
PspEI	GGTNACC	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	728, 729
PspPI	GGNCC	1 cut(s)	727
PspPPI	RGGWCCY	1 cut(s)	727
PstNI	CAGNNNCTG	3 cut(s)	80, 342, 473
PsuI	RGATCY	1 cut(s)	142
PvuII	CAGCTG	2 cut(s)	306, 830
RsaI	GTAC	2 cut(s)	113, 440
RsaNI	GTAC	2 cut(s)	112, 439
RseI	CAYNNNNRTG	2 cut(s)	95, 107
SacI	GAGCTC	2 cut(s)	66, 646
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	2 cut(s)	360, 828
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	727
SchI	GAGTC	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	66, 646
SfcI	CTRYAG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	727
SmiMI	CAYNNNNRTG	2 cut(s)	95, 107
SmlI	CTYRAG	2 cut(s)	59, 645
SmoI	CTYRAG	2 cut(s)	59, 645
Sse9I	AATT	4 cut(s)	375, 417, 553, 871
SspMI	CTAG	2 cut(s)	363, 845
SstI	GAGCTC	2 cut(s)	66, 646
StyI	CCWWGG	2 cut(s)	105, 207
TaaI	ACNGT	5 cut(s)	201, 338, 508, 710, 805
TasI	AATT	4 cut(s)	375, 417, 553, 871
TatI	WGTACW	2 cut(s)	111, 438
TfiI	GAWTC	2 cut(s)	83, 840
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	7 cut(s)	97, 244, 502, 511, 587, 639, 810
TseFI	GTSAC	2 cut(s)	278, 599
TseI	GCWGC	2 cut(s)	359, 827
Tsp45I	GTSAC	2 cut(s)	278, 599
TspDTI	ATGAA	6 cut(s)	13, 638, 735, 762, 768, 893
TspRI	CASTG	7 cut(s)	97, 244, 502, 511, 587, 639, 810
VpaK11BI	GGWCC	1 cut(s)	727
XapI	RAATTY	2 cut(s)	417, 871
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	2 cut(s)	363, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.