Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Reverse (-)

3408379 .. 3410412

Gene Structure 2034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G048300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGTTTTCTCTCAAAACCTGTTCCCAATTTCTTCCTTTATTTGCTTTTGTTCTTCTTCAGTCTTCAGCTCATCATCCCACTTGCTGAATCTGCTACTGATATCACCTCCTTGGTCTACAAGGGCTGTGCAAAGCAGACCTTTTCAGATCCAACTGGGGTTTACTCTCAATCCCTCTCAGCCCTTTTTGGGTCTTTGGTTCAACAGTCCACCAAGGCCAAGTTTTTCAAAACCAACTCTGGCAGTGGCCAAACCACCATCTCTGGTCTCTTTCAATGCAGAGGGGACCTCAGCAATTCTGACTGTTACAACTGTGTGAGCAAATTGCCACAAATGTCTGATAATCTCTGTGGCAAAACCATTGCTGCAAGGGTTCAGCTGATTGGGTGCTACATGCTCTATGAAATCTCTGGTTTTGCCCAAATTTCAGGCATGGAAATGTTGTTCAAGACTTGTGGGGGAACAAATATTGCAGGAAGTGGGTTTGAAGAGAGAAGGGACACTGCCTATACAGTGTTGGAGAATGGTGTTGTGAGTGGCCATGGCTTCTATACAACAAATTACCAACAAGTTTATGTCTTGGGGCAGTGCCAAGGAGATGTGGGAGACTCAGATTGTGGTGAGTGTGTGAAGAATGCTGTGCAGAGAGCTCAGGTTGAATGTGGGAGTGCCATTTCAGGCCAAATCTATCTCCACAAGTGCTTTCTTAGCTATAGTTATTACCCAAATGGGGTTCCCAGGAGATCCTCCTCATCTTCATCATCATCTTCTTCATCTTCATCAGGGTCAGGAAATACAGGGAAGACAGTGGCTATCATTTTGGGAGGAGCAGCTGGAGTTGGGTTTCTAGTCATATTTTTGTTGTTTGCCAGAAATTTGATGAAGAAGCATGATGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

301

Amino Acids

32.2

Weight (kDa)

8.2

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AclWI	GGATC	2 cut(s)	143, 738
AcoI	YGGCCR	2 cut(s)	247, 538
AcsI	RAATTY	2 cut(s)	423, 874
AcuI	CTGAAG	2 cut(s)	43, 50
AfiI	CCNNNNNNNGG	2 cut(s)	189, 730
AgsI	TTSAA	6 cut(s)	203, 229, 275, 448, 488, 659
AjnI	CCWGG	1 cut(s)	737
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	5 cut(s)	70, 379, 650, 711, 833
AluI	AGCT	5 cut(s)	70, 379, 650, 711, 833
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	2 cut(s)	272, 600
AlwI	GGATC	2 cut(s)	143, 738
AoxI	GGCC	4 cut(s)	216, 247, 538, 679
ApeKI	GCWGC	2 cut(s)	365, 830
ApoI	RAATTY	2 cut(s)	423, 874
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	97, 632
AvaII	GGWCC	1 cut(s)	286
BalI	TGGCCA	2 cut(s)	249, 540
BanII	GRGCYC	1 cut(s)	652
BbsI	GAAGAC	2 cut(s)	56, 809
Bbv12I	GWGCWC	1 cut(s)	652
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	352, 842
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	739
BcoDI	GTCTC	2 cut(s)	272, 600
BfaI	CTAG	1 cut(s)	848
BfmI	CTRYAG	1 cut(s)	712
BisI	GCNGC	2 cut(s)	366, 831
BlsI	GCNGC	2 cut(s)	367, 832
Bme1390I	CCNGG	1 cut(s)	739
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	287, 735
BmrFI	CCNGG	1 cut(s)	739
BmrI	ACTGGG	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	2 cut(s)	56, 809
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	855
Bpu10I	CCTNAGC	2 cut(s)	290, 651
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	5 cut(s)	111, 213, 541, 592, 737
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 730
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	739
BseDI	CCNNGG	5 cut(s)	111, 213, 541, 592, 737
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	189, 730
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	4 cut(s)	192, 304, 624, 665
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	2 cut(s)	739, 840
BseXI	GCAGC	2 cut(s)	352, 842
BsgI	GTGCAG	1 cut(s)	662
BshFI	GGCC	4 cut(s)	218, 249, 540, 681
BsiHKAI	GWGCWC	1 cut(s)	652
BslFI	GGGAC	2 cut(s)	299, 512
BslI	CCNNNNNNNGG	2 cut(s)	189, 730
BsmAI	GTCTC	2 cut(s)	272, 600
BsmFI	GGGAC	2 cut(s)	299, 512
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	4 cut(s)	218, 249, 540, 681
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp143I	GATC	2 cut(s)	148, 743
Bsp19I	CCATGG	1 cut(s)	541
BspANI	GGCC	4 cut(s)	218, 249, 540, 681
BspCNI	CTCAG	4 cut(s)	191, 303, 623, 664
BspLI	GGNNCC	2 cut(s)	287, 735
BspPI	GGATC	2 cut(s)	143, 738
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	5 cut(s)	111, 213, 541, 592, 737
BssMI	GATC	2 cut(s)	148, 743
BssT1I	CCWWGG	4 cut(s)	111, 213, 541, 592
Bst2UI	CCWGG	1 cut(s)	739
Bst4CI	ACNGT	5 cut(s)	207, 305, 314, 514, 808
Bst6I	CTCTTC	1 cut(s)	483
BstDEI	CTNAG	5 cut(s)	178, 290, 610, 651, 707
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	2 cut(s)	151, 746
BstMAI	GTCTC	2 cut(s)	272, 600
BstMBI	GATC	2 cut(s)	148, 743
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 708
BstNI	CCWGG	1 cut(s)	739
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	737
BstSFI	CTRYAG	1 cut(s)	712
BstV1I	GCAGC	2 cut(s)	352, 842
BstV2I	GAAGAC	2 cut(s)	56, 809
BstX2I	RGATCY	2 cut(s)	148, 743
BstYI	RGATCY	2 cut(s)	148, 743
BsuRI	GGCC	4 cut(s)	218, 249, 540, 681
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	3 cut(s)	250, 501, 593
BtsIMutI	CAGTG	5 cut(s)	250, 501, 519, 593, 813
Cfr13I	GGNCC	1 cut(s)	286
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	4 cut(s)	394, 433, 542, 890
DdeI	CTNAG	5 cut(s)	178, 290, 610, 651, 707
DpnI	GATC	2 cut(s)	150, 745
DpnII	GATC	2 cut(s)	148, 743
EaeI	YGGCCR	2 cut(s)	247, 538
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	650
Eco130I	CCWWGG	4 cut(s)	111, 213, 541, 592
Eco24I	GRGCYC	1 cut(s)	652
Eco31I	GGTCTC	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	650
Eco57I	CTGAAG	2 cut(s)	43, 50
EcoICRI	GAGCTC	1 cut(s)	650
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	737
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	4 cut(s)	111, 213, 541, 592
EcoT38I	GRGCYC	1 cut(s)	652
ErhI	CCWWGG	4 cut(s)	111, 213, 541, 592
FaeI	CATG	4 cut(s)	397, 436, 545, 893
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	2 cut(s)	299, 512
FatI	CATG	4 cut(s)	393, 432, 541, 889
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	366, 831
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	652
Fsp4HI	GCNGC	2 cut(s)	366, 831
FspBI	CTAG	1 cut(s)	848
GluI	GCNGC	2 cut(s)	366, 831
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	4 cut(s)	218, 249, 540, 681
Hin1II	CATG	4 cut(s)	397, 436, 545, 893
HinfI	GANTC	2 cut(s)	89, 608
HphI	GGTGA	2 cut(s)	97, 632
Hpy166II	GTNNAC	3 cut(s)	118, 163, 210
Hpy188I	TCNGA	4 cut(s)	148, 301, 340, 613
Hpy188III	TCNNGA	2 cut(s)	448, 789
Hpy8I	GTNNAC	3 cut(s)	118, 163, 210
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	5 cut(s)	207, 305, 314, 514, 808
HpyCH4V	TGCA	5 cut(s)	131, 279, 368, 473, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 708
HpyF3I	CTNAG	5 cut(s)	178, 290, 610, 651, 707
Hsp92II	CATG	4 cut(s)	397, 436, 545, 893
Kzo9I	GATC	2 cut(s)	148, 743
LmnI	GCTCC	1 cut(s)	827
Lsp1109I	GCAGC	2 cut(s)	352, 842
MaeI	CTAG	1 cut(s)	848
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	150, 745
MboI	GATC	2 cut(s)	148, 743
MflI	RGATCY	2 cut(s)	148, 743
MhlI	GDGCHC	1 cut(s)	652
MlsI	TGGCCA	2 cut(s)	249, 540
MluCI	AATT	6 cut(s)	28, 295, 323, 423, 559, 874
MluNI	TGGCCA	2 cut(s)	249, 540
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	176, 498
MnlI	CCTC	7 cut(s)	118, 185, 275, 299, 757, 760, 818
Mox20I	TGGCCA	2 cut(s)	249, 540
MscI	TGGCCA	2 cut(s)	249, 540
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	2 cut(s)	249, 540
MspA1I	CMGCKG	2 cut(s)	379, 833
MspR9I	CCNGG	1 cut(s)	739
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	739
MwoI	GCNNNNNNNGC	2 cut(s)	92, 708
NcoI	CCATGG	1 cut(s)	541
NdeII	GATC	2 cut(s)	148, 743
NlaIII	CATG	4 cut(s)	397, 436, 545, 893
NlaIV	GGNNCC	2 cut(s)	287, 735
NspI	RCATGY	1 cut(s)	397
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	367, 832
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
PpuMI	RGGWCCY	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	652
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	737
PspGI	CCWGG	1 cut(s)	737
PspN4I	GGNNCC	2 cut(s)	287, 735
PspPI	GGNCC	1 cut(s)	286
PspPPI	RGGWCCY	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	148, 743
PvuII	CAGCTG	2 cut(s)	379, 833
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	652
SatI	GCNGC	2 cut(s)	366, 831
Sau3AI	GATC	2 cut(s)	148, 743
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	739
SduI	GDGCHC	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	712
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	6 cut(s)	28, 295, 323, 423, 559, 874
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	848
SstI	GAGCTC	1 cut(s)	652
StyD4I	CCNGG	1 cut(s)	737
StyI	CCWWGG	4 cut(s)	111, 213, 541, 592
TaaI	ACNGT	5 cut(s)	207, 305, 314, 514, 808
TasI	AATT	6 cut(s)	28, 295, 323, 423, 559, 874
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	5 cut(s)	250, 508, 519, 593, 813
TseI	GCWGC	2 cut(s)	365, 830
TspDTI	ATGAA	5 cut(s)	417, 747, 762, 768, 896
TspRI	CASTG	5 cut(s)	250, 508, 519, 593, 813
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	2 cut(s)	423, 874
XceI	RCATGY	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.