Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Forward (+)

44481844 .. 44483427

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0357800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGTTTTCAGCCATTACCTCAATTTGATGGGCGTTGCTGAAGTTCATCACAGGGTTCGTAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGATATTTTTAATCAGCTTCTCAGCATGGTGTTTCCCGAGACCATCTTTACGATACCGTTTGCAAGCAGATATCTTGTTCTCAACCTTAAGTTCTTCTTGCTGCAGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATTGCGGAACCTTACAATACAAACATATCAGACTTTCTGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGACACCATAAACCCACACCAGGTTATGAAGCTAGGGCAGGTTTGAACATTGTGGAGCAGCCCCTTTGGAAAGCTGTACCTCATTATTTACGTCATGTCAGCAATGCTTTAAAGAAGCACACTGGGAAACTGGAAAACCACTTCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

166

Amino Acids

19.28

Weight (kDa)

9.51

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	1 - 103	1e-09	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	106 - 161	1.8e-11	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	91
AciI	CCGC	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	5 cut(s)	6, 145, 349, 383, 425
AluI	AGCT	5 cut(s)	6, 145, 349, 383, 425
Alw26I	GTCTC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	229, 409
AseI	ATTAAT	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	164
BauI	CACGAG	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	216, 421
BccI	CCATC	2 cut(s)	52, 179
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	230
BfrI	CTTAAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	380
BisI	GCNGC	2 cut(s)	230, 410
BlsI	GCNGC	2 cut(s)	231, 411
Bme1390I	CCNGG	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	478, 486
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	107, 259
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	2 cut(s)	478, 486
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	216, 421
BsgI	GTGCAG	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	478, 486
BssSI	CACGAG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	3 cut(s)	7, 149, 350
BstF5I	GGATG	2 cut(s)	107, 259
BstMAI	GTCTC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	216, 421
BtsCI	GGATG	2 cut(s)	107, 259
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	193
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	428
CspCI	CAANNNNNGTGG	1 cut(s)	479
CviAII	CATG	2 cut(s)	154, 446
CviJI	RGCY	7 cut(s)	6, 42, 145, 349, 383, 412, 425
CviKI_1	RGCY	7 cut(s)	6, 42, 145, 349, 383, 412, 425
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	3 cut(s)	7, 149, 350
DraI	TTTAAA	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	200
FaeI	CATG	2 cut(s)	157, 449
FaiI	YATR	6 cut(s)	155, 300, 334, 360, 378, 447
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	2 cut(s)	153, 445
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	230, 410
FokI	GGATG	2 cut(s)	94, 246
Fsp4HI	GCNGC	2 cut(s)	230, 410
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	2 cut(s)	230, 410
Hin1II	CATG	2 cut(s)	157, 449
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	2 cut(s)	164, 241
Hpy8I	GTNNAC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	3 cut(s)	191, 232, 257
HpyF3I	CTNAG	3 cut(s)	7, 149, 350
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	2 cut(s)	157, 449
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	7 cut(s)	67, 218, 357, 375, 384, 459, 467
Lsp1109I	GCAGC	2 cut(s)	216, 421
LweI	GCATC	1 cut(s)	116
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	1 cut(s)	442
MboII	GAAGA	1 cut(s)	214
MluCI	AATT	3 cut(s)	52, 270, 274
MnlI	CCTC	5 cut(s)	4, 7, 59, 229, 441
MseI	TTAA	4 cut(s)	138, 216, 273, 461
MspCI	CTTAAG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
NlaIII	CATG	2 cut(s)	157, 449
NlaIV	GGNNCC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	231, 411
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SaqAI	TTAA	4 cut(s)	138, 216, 273, 461
SatI	GCNGC	2 cut(s)	230, 410
ScrFI	CCNGG	1 cut(s)	372
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	52, 270, 274
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	52, 270, 274
Tru1I	TTAA	4 cut(s)	138, 216, 273, 461
Tru9I	TTAA	4 cut(s)	138, 216, 273, 461
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	2 cut(s)	229, 409
TspDTI	ATGAA	2 cut(s)	65, 393
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	478
Vha464I	CTTAAG	1 cut(s)	215
VspI	ATTAAT	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	91
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.