Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Reverse (-)

15553942 .. 15555024

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGTTTTCTCTCAAACCCTGTTTCCAATTTCTCCCTCTATCTGCTTCTGTTCTACTTCCTCATCAGTTTTGAGCTCATCCCAGTTGCTGAATCTGCCACTGACATCACCTCCTTTGTTTACAAGGGCTGTGCAAAGCAGACATTTTCAGATCGATCAGGGGTCTACTCCCAAGCCCTCTCAGCCCTCTTTGGGTCCCTGGTGCAGCAGTCCTCCAAGGCCAAGTTCTTCAAGACCAACACAGGCAGTGGCCAAACCACCATCTCAGGGCTCTTCCAATGCAGAGGTGACCTCAGCAACTCTGACTGCTACACCTGTGTGAGCAAATTGCCCCAAATGTCTGACAATCTCTGTGGCAAAACCATTGCTGCTAGGGTTCAGCTCATTGGGTGTTACATGCTCTATGAAATCTCAGGTTTTGCCCAAATTTCAGGCATGGAAATGCTGTACAAAACCTGTGGGGGGACTAATGTGGCAGGGTCAGGGTTTGAGGAGAGGAGGGACACTGCCTTTAGTGTTTTGGAGAATGGGGTTGTGAGTAACCATGGATTTTACACCACAAACTATCAGCAGGTTTATGTTTTGGGGCAGTGCCAGGGAGATGTTGGGGACTCAGATTGTGGGGAGTGTATGAAGAATGGGGTGCAGAGAGCTCAGGTTGAATGTGGGAGTGCAATTTCTGGCCAAGTCTATCTCCATAAGTGCTTTCTTAGCTATAGTTATTACCCTAATGGGGTTCCCAGGATCGATCATCCTCTTCTTCCTCATCATCCTCTTCATCTTCATCAGGGTCAGGAAATACAGGGAAGACAGTGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

274

Amino Acids

29.99

Weight (kDa)

6.36

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	250, 682
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	4 cut(s)	192, 267, 462, 733
AgsI	TTSAA	2 cut(s)	232, 662
AjnI	CCWGG	3 cut(s)	198, 594, 740
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	76, 382, 653, 714
AluI	AGCT	4 cut(s)	76, 382, 653, 714
Alw21I	GWGCWC	2 cut(s)	78, 655
AlwI	GGATC	1 cut(s)	752
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	3 cut(s)	219, 250, 682
ApeKI	GCWGC	2 cut(s)	205, 368
ApoI	RAATTY	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	100, 299
AvaII	GGWCC	1 cut(s)	195
BalI	TGGCCA	2 cut(s)	252, 684
BanII	GRGCYC	3 cut(s)	78, 273, 655
BbsI	GAAGAC	1 cut(s)	814
Bbv12I	GWGCWC	2 cut(s)	78, 655
BbvCI	CCTCAGC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	217, 355
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	3 cut(s)	200, 596, 742
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	715
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	2 cut(s)	206, 369
BlsI	GCNGC	2 cut(s)	207, 370
Bme1390I	CCNGG	3 cut(s)	200, 596, 742
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	3 cut(s)	196, 197, 738
BmrFI	CCNGG	3 cut(s)	200, 596, 742
BmrI	ACTGGG	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	814
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
Bpu10I	CCTNAGC	2 cut(s)	293, 654
Bsa29I	ATCGAT	2 cut(s)	154, 747
BsaJI	CCNNGG	5 cut(s)	198, 216, 544, 595, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 267, 462, 733
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	200, 596, 742
BseCI	ATCGAT	2 cut(s)	154, 747
BseDI	CCNNGG	5 cut(s)	198, 216, 544, 595, 740
BseGI	GGATG	3 cut(s)	78, 751, 769
BseLI	CCNNNNNNNGG	4 cut(s)	192, 267, 462, 733
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	6 cut(s)	195, 279, 307, 426, 627, 668
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	2 cut(s)	506, 511
BseXI	GCAGC	2 cut(s)	217, 355
BsgI	GTGCAG	2 cut(s)	224, 665
BshFI	GGCC	3 cut(s)	221, 252, 684
BshVI	ATCGAT	2 cut(s)	154, 747
BsiHKAI	GWGCWC	2 cut(s)	78, 655
BslFI	GGGAC	4 cut(s)	181, 478, 515, 623
BslI	CCNNNNNNNGG	4 cut(s)	192, 267, 462, 733
BsmFI	GGGAC	4 cut(s)	181, 478, 515, 623
BsnI	GGCC	3 cut(s)	221, 252, 684
Bsp1286I	GDGCHC	3 cut(s)	78, 273, 655
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	4 cut(s)	151, 155, 744, 748
Bsp19I	CCATGG	1 cut(s)	544
BspANI	GGCC	3 cut(s)	221, 252, 684
BspCNI	CTCAG	6 cut(s)	194, 278, 306, 425, 626, 667
BspDI	ATCGAT	2 cut(s)	154, 747
BspLI	GGNNCC	3 cut(s)	196, 197, 738
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	752
BspQI	GCTCTTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	5 cut(s)	198, 216, 544, 595, 740
BssMI	GATC	4 cut(s)	151, 155, 744, 748
BssT1I	CCWWGG	2 cut(s)	216, 544
Bst2UI	CCWGG	3 cut(s)	200, 596, 742
Bst4CI	ACNGT	1 cut(s)	813
Bst6I	CTCTTC	3 cut(s)	278, 762, 780
BstAUI	TGTACA	1 cut(s)	447
BstDEI	CTNAG	7 cut(s)	181, 265, 293, 412, 613, 654, 710
BstDSI	CCRYGG	1 cut(s)	544
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	3 cut(s)	78, 751, 769
BstKTI	GATC	4 cut(s)	154, 158, 747, 751
BstMBI	GATC	4 cut(s)	151, 155, 744, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 182, 711
BstNI	CCWGG	3 cut(s)	200, 596, 742
BstNSI	RCATGY	1 cut(s)	400
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	198, 594, 740
BstSFI	CTRYAG	1 cut(s)	715
BstV1I	GCAGC	2 cut(s)	217, 355
BstV2I	GAAGAC	1 cut(s)	814
Bsu15I	ATCGAT	2 cut(s)	154, 747
BsuRI	GGCC	3 cut(s)	221, 252, 684
BsuTUI	ATCGAT	2 cut(s)	154, 747
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	78, 751, 769
BtsI	GCAGTG	3 cut(s)	253, 504, 596
BtsIMutI	CAGTG	5 cut(s)	99, 253, 504, 596, 818
BveI	ACCTGC	1 cut(s)	562
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	195
ClaI	ATCGAT	2 cut(s)	154, 747
Csp6I	GTAC	1 cut(s)	448
CspCI	CAANNNNNGTGG	4 cut(s)	334, 369, 439, 474
CviAII	CATG	3 cut(s)	397, 436, 545
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	7 cut(s)	181, 265, 293, 412, 613, 654, 710
DpnI	GATC	4 cut(s)	153, 157, 746, 750
DpnII	GATC	4 cut(s)	151, 155, 744, 748
EaeI	YGGCCR	2 cut(s)	250, 682
Eam1104I	CTCTTC	3 cut(s)	278, 762, 780
EarI	CTCTTC	3 cut(s)	278, 762, 780
Ecl136II	GAGCTC	2 cut(s)	76, 653
Eco130I	CCWWGG	2 cut(s)	216, 544
Eco24I	GRGCYC	3 cut(s)	78, 273, 655
Eco47I	GGWCC	1 cut(s)	195
Eco53kI	GAGCTC	2 cut(s)	76, 653
Eco91I	GGTNACC	1 cut(s)	287
EcoICRI	GAGCTC	2 cut(s)	76, 653
EcoO109I	RGGNCCY	1 cut(s)	195
EcoO65I	GGTNACC	1 cut(s)	287
EcoRII	CCWGG	3 cut(s)	198, 594, 740
EcoT14I	CCWWGG	2 cut(s)	216, 544
EcoT38I	GRGCYC	3 cut(s)	78, 273, 655
ErhI	CCWWGG	2 cut(s)	216, 544
FaeI	CATG	3 cut(s)	400, 439, 548
FaiI	YATR	9 cut(s)	398, 405, 437, 546, 579, 632, 699, 717, 820
FaqI	GGGAC	4 cut(s)	181, 478, 515, 623
FatI	CATG	3 cut(s)	396, 435, 544
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	206, 369
FokI	GGATG	3 cut(s)	65, 738, 756
FriOI	GRGCYC	3 cut(s)	78, 273, 655
Fsp4HI	GCNGC	2 cut(s)	206, 369
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	2 cut(s)	206, 369
HaeIII	GGCC	3 cut(s)	221, 252, 684
Hin1II	CATG	3 cut(s)	400, 439, 548
HinfI	GANTC	2 cut(s)	92, 611
HphI	GGTGA	2 cut(s)	100, 299
Hpy166II	GTNNAC	2 cut(s)	121, 166
Hpy188I	TCNGA	4 cut(s)	151, 304, 343, 616
Hpy188III	TCNNGA	2 cut(s)	232, 794
Hpy8I	GTNNAC	2 cut(s)	121, 166
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4V	TGCA	5 cut(s)	134, 205, 282, 646, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 182, 711
HpyF3I	CTNAG	7 cut(s)	181, 265, 293, 412, 613, 654, 710
Hsp92II	CATG	3 cut(s)	400, 439, 548
KflI	GGGWCCC	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	151, 155, 744, 748
LguI	GCTCTTC	1 cut(s)	278
Lsp1109I	GCAGC	2 cut(s)	217, 355
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	287, 392, 539
MalI	GATC	4 cut(s)	153, 157, 746, 750
MboI	GATC	4 cut(s)	151, 155, 744, 748
MboII	GAAGA	8 cut(s)	220, 265, 646, 749, 752, 767, 773, 819
MhlI	GDGCHC	3 cut(s)	78, 273, 655
MlsI	TGGCCA	2 cut(s)	252, 684
MluCI	AATT	4 cut(s)	28, 326, 426, 675
MluNI	TGGCCA	2 cut(s)	252, 684
MlyI	GAGTC	1 cut(s)	605
Mox20I	TGGCCA	2 cut(s)	252, 684
MscI	TGGCCA	2 cut(s)	252, 684
MslI	CAYNNNNRTG	2 cut(s)	317, 440
Msp20I	TGGCCA	2 cut(s)	252, 684
MspR9I	CCNGG	3 cut(s)	200, 596, 742
MvaI	CCWGG	3 cut(s)	200, 596, 742
MwoI	GCNNNNNNNGC	3 cut(s)	95, 182, 711
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	4 cut(s)	151, 155, 744, 748
NlaIII	CATG	3 cut(s)	400, 439, 548
NlaIV	GGNNCC	3 cut(s)	196, 197, 738
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	207, 370
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PpuMI	RGGWCCY	1 cut(s)	195
Psp124BI	GAGCTC	2 cut(s)	78, 655
Psp5II	RGGWCCY	1 cut(s)	195
Psp6I	CCWGG	3 cut(s)	198, 594, 740
PspEI	GGTNACC	1 cut(s)	287
PspGI	CCWGG	3 cut(s)	198, 594, 740
PspN4I	GGNNCC	3 cut(s)	196, 197, 738
PspPI	GGNCC	1 cut(s)	195
PspPPI	RGGWCCY	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	2 cut(s)	317, 440
SacI	GAGCTC	2 cut(s)	78, 655
SapI	GCTCTTC	1 cut(s)	278
SatI	GCNGC	2 cut(s)	206, 369
Sau3AI	GATC	4 cut(s)	151, 155, 744, 748
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	3 cut(s)	200, 596, 742
SduI	GDGCHC	3 cut(s)	78, 273, 655
SfcI	CTRYAG	1 cut(s)	715
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	2 cut(s)	317, 440
Sse9I	AATT	4 cut(s)	28, 326, 426, 675
SspMI	CTAG	1 cut(s)	372
SstI	GAGCTC	2 cut(s)	78, 655
StyD4I	CCNGG	3 cut(s)	198, 594, 740
StyI	CCWWGG	2 cut(s)	216, 544
TaaI	ACNGT	1 cut(s)	813
TaqI	TCGA	2 cut(s)	154, 747
TasI	AATT	4 cut(s)	28, 326, 426, 675
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	5 cut(s)	106, 253, 511, 596, 818
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	205, 368
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	420, 647, 767, 773
TspRI	CASTG	5 cut(s)	106, 253, 511, 596, 818
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.