Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8264217.1

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 814

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8264217.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 647 bp

aagcagaaaaagcaaatgggtttactctcaaaacccttcattttcttcctctacttgcttctgttctccaatcttgagctcatcatcccagttgctgaatctgccactgatatgaccaccatggtgtacaaaggttgtgcaaagcagaccttttcagatccaactggggtttactcccaatccctctctgccctttttgggtctctggttcaacaatccaccaaggccaagtttttcaagaccaactcaggcagtggccaaaccaccatctctggtctctttcaatgcagaggtgacctcagcaactctgattgctacagctgtgtgagtaaactcccccaaatggttgacagtctctgtggcaaaaccattgctgctagagttcagctaattggttgctacatgctctatgagatttctgggtttgcccaaatttcagggatggaaatgttgtacaagacttgtgggggaacaaacattgcagggtctgggtttgaagagagaagggatactgctttcactgttttggagaatggtgtggttagtggtcatgggttttataccacaaattaccaacaagtctatgtcttgggtcagtgtcaaggagatgtgggtgactcagattgtggtgagtgtatgaagagtgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

216

Amino Acids

23.42

Weight (kDa)

6.73

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	432
AfaI	GTAC	2 cut(s)	128, 455
AfiI	CCNNNNNNNGG	2 cut(s)	198, 343
AgsI	TTSAA	4 cut(s)	212, 238, 284, 497
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	79, 321, 388
AluI	AGCT	3 cut(s)	79, 321, 388
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	3 cut(s)	207, 281, 359
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	3 cut(s)	95, 357, 488
AoxI	GGCC	2 cut(s)	225, 256
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	432
AsuHPI	GGTGA	3 cut(s)	305, 626, 641
BalI	TGGCCA	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	2 cut(s)	275, 436
BciVI	GTATCC	1 cut(s)	502
BcoDI	GTCTC	3 cut(s)	207, 281, 359
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BmrI	ACTGGG	2 cut(s)	83, 174
BmuI	ACTGGG	2 cut(s)	83, 174
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	2 cut(s)	207, 281
BsaJI	CCNNGG	2 cut(s)	120, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 343
Bse1I	ACTGG	2 cut(s)	89, 169
Bse3DI	GCAATG	2 cut(s)	369, 477
BseDI	CCNNGG	2 cut(s)	120, 222
BseGI	GGATG	2 cut(s)	84, 447
BseLI	CCNNNNNNNGG	2 cut(s)	198, 343
BseMI	GCAATG	2 cut(s)	369, 477
BseMII	CTCAG	3 cut(s)	261, 313, 633
BseNI	ACTGG	2 cut(s)	89, 169
BseXI	GCAGC	1 cut(s)	361
BshFI	GGCC	2 cut(s)	227, 258
BsiHKAI	GWGCWC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	198, 343
BsmAI	GTCTC	3 cut(s)	207, 281, 359
BsnI	GGCC	2 cut(s)	227, 258
Bso31I	GGTCTC	2 cut(s)	207, 281
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	2 cut(s)	126, 453
Bsp143I	GATC	1 cut(s)	157
Bsp19I	CCATGG	1 cut(s)	120
BspANI	GGCC	2 cut(s)	227, 258
BspCNI	CTCAG	3 cut(s)	260, 312, 632
BspPI	GGATC	1 cut(s)	152
BspTNI	GGTCTC	2 cut(s)	207, 281
BsrDI	GCAATG	2 cut(s)	369, 477
BsrGI	TGTACA	2 cut(s)	126, 453
BsrI	ACTGG	2 cut(s)	89, 169
BssECI	CCNNGG	2 cut(s)	120, 222
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	2 cut(s)	120, 222
Bst4CI	ACNGT	2 cut(s)	353, 523
Bst6I	CTCTTC	2 cut(s)	492, 635
BstAUI	TGTACA	2 cut(s)	126, 453
BstDEI	CTNAG	3 cut(s)	247, 299, 619
BstDSI	CCRYGG	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	84, 447
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	3 cut(s)	207, 281, 359
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 101
BstNSI	RCATGY	1 cut(s)	406
BstPI	GGTNACC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	227, 258
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	84, 447
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	4 cut(s)	105, 259, 519, 602
CaiI	CAGNNNCTG	3 cut(s)	95, 357, 488
Csp6I	GTAC	2 cut(s)	127, 454
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	3 cut(s)	121, 403, 551
CviJI	RGCY	5 cut(s)	79, 227, 258, 321, 388
CviKI_1	RGCY	5 cut(s)	79, 227, 258, 321, 388
CviQI	GTAC	2 cut(s)	127, 454
DdeI	CTNAG	3 cut(s)	247, 299, 619
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	492, 635
EarI	CTCTTC	2 cut(s)	492, 635
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	120, 222
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	2 cut(s)	207, 281
Eco53kI	GAGCTC	1 cut(s)	79
Eco91I	GGTNACC	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	120, 222
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	120, 222
FaeI	CATG	3 cut(s)	124, 406, 554
FaiI	YATR	8 cut(s)	113, 122, 404, 411, 552, 561, 585, 638
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	3 cut(s)	120, 402, 550
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	2 cut(s)	71, 454
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	227, 258
Hin1II	CATG	3 cut(s)	124, 406, 554
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	98, 617
HphI	GGTGA	3 cut(s)	305, 626, 641
Hpy166II	GTNNAC	5 cut(s)	23, 127, 172, 332, 349
Hpy188I	TCNGA	3 cut(s)	157, 310, 622
Hpy188III	TCNNGA	2 cut(s)	74, 238
Hpy8I	GTNNAC	5 cut(s)	23, 127, 172, 332, 349
HpyAV	CCTTC	2 cut(s)	46, 498
HpyCH4III	ACNGT	2 cut(s)	353, 523
HpyCH4V	TGCA	3 cut(s)	140, 288, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 101
HpyF3I	CTNAG	3 cut(s)	247, 299, 619
Hsp92II	CATG	3 cut(s)	124, 406, 554
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	9 cut(s)	102, 150, 191, 234, 258, 405, 423, 468, 474
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	293, 614
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	37, 509
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	3 cut(s)	390, 432, 568
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	59, 194, 284, 308
Mox20I	TGGCCA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	258
MslI	CAYNNNNRTG	2 cut(s)	110, 122
Msp20I	TGGCCA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	10, 101
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	3 cut(s)	124, 406, 554
NmuCI	GTSAC	2 cut(s)	293, 614
NspI	RCATGY	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	293
PstNI	CAGNNNCTG	3 cut(s)	95, 357, 488
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	321
RsaI	GTAC	2 cut(s)	128, 455
RsaNI	GTAC	2 cut(s)	127, 454
RseI	CAYNNNNRTG	2 cut(s)	110, 122
SacI	GAGCTC	1 cut(s)	81
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	7 cut(s)	81, 136, 152, 295, 300, 323, 390
SfcI	CTRYAG	1 cut(s)	316
SmiMI	CAYNNNNRTG	2 cut(s)	110, 122
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	390, 432, 568
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	120, 222
TaaI	ACNGT	2 cut(s)	353, 523
TasI	AATT	3 cut(s)	390, 432, 568
TatI	WGTACW	2 cut(s)	126, 453
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	4 cut(s)	112, 259, 526, 602
TseFI	GTSAC	2 cut(s)	293, 614
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	2 cut(s)	293, 614
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	4 cut(s)	112, 259, 526, 602
XapI	RAATTY	1 cut(s)	432
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.