Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Forward (+)

44472733 .. 44473156

Gene Structure 424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0357700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAATCGAGCTTTCTTGGCCGACGGTGTCCCAAATCCGGGCCTTGACGATCTAATCATCGACGTGGATGCTCCGGGTGGCAAACTCAACGCCAATGGTGGACTTAGACTCGAGGTTGAACTCGTTGCTCATGAACCTGGACAACAAGTCGGATTTGTCGACACCAGAATTGCCGATCAGGAAGACCTTGAAGCGGTAGTCGTCGTCCGACTTGTAGGCCATGTCAAAGAGCCGGAGAGACTTTCCGGTTGGAGATTTTCAATTGGAGATGAAGAAGCCGCGGGCCTTGTCGTCATCGCTGGAGAATCAGTGCTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

106

Amino Acids

11.22

Weight (kDa)

4.32

Isoelectric Point (pI)

21.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	1 cut(s)	281
AciI	CCGC	3 cut(s)	194, 279, 281
AcoI	YGGCCR	1 cut(s)	18
AfiI	CCNNNNNNNGG	3 cut(s)	37, 38, 193
AgsI	TTSAA	3 cut(s)	119, 191, 261
AhdI	GACNNNNNGTC	1 cut(s)	146
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	4 cut(s)	18, 40, 217, 283
AspS9I	GGNCC	2 cut(s)	40, 283
AsuC2I	CCSGG	2 cut(s)	39, 75
AvaI	CYCGRG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	315
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	39, 75
BcoDI	GTCTC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	39, 75, 138
BmeRI	GACNNNNNGTC	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	40, 283
BmrFI	CCNGG	3 cut(s)	39, 75, 138
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	321
BpuMI	CCSGG	2 cut(s)	39, 75
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 38, 193
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	3 cut(s)	37, 38, 193
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	4 cut(s)	20, 42, 219, 285
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	38, 74, 233, 246
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	3 cut(s)	37, 38, 193
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	4 cut(s)	20, 42, 219, 285
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	49, 175
BspACI	CCGC	3 cut(s)	194, 279, 281
BspANI	GGCC	4 cut(s)	20, 42, 219, 285
BspFNI	CGCG	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	49, 175
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	52, 178
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	49, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	3 cut(s)	37, 73, 136
BstUI	CGCG	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	189
BsuRI	GGCC	4 cut(s)	20, 42, 219, 285
BtgI	CCRYGG	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	280
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	283
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	40, 283
Cfr42I	CCGCGG	1 cut(s)	282
CviAII	CATG	2 cut(s)	131, 221
CviJI	RGCY	7 cut(s)	11, 20, 42, 219, 232, 278, 285
CviKI_1	RGCY	7 cut(s)	11, 20, 42, 219, 232, 278, 285
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	51, 177
DpnII	GATC	2 cut(s)	49, 175
DriI	GACNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	18
Eam1105I	GACNNNNNGTC	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	136
FaeI	CATG	2 cut(s)	134, 224
FaiI	YATR	2 cut(s)	132, 222
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	2 cut(s)	130, 220
FauI	CCCGC	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	4 cut(s)	20, 42, 219, 285
HapII	CCGG	4 cut(s)	38, 74, 233, 246
Hin1II	CATG	2 cut(s)	134, 224
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	4, 108, 305
HpaII	CCGG	4 cut(s)	38, 74, 233, 246
Hpy166II	GTNNAC	2 cut(s)	101, 160
Hpy188I	TCNGA	2 cut(s)	152, 209
Hpy188III	TCNNGA	2 cut(s)	131, 179
Hpy8I	GTNNAC	2 cut(s)	101, 160
Hpy99I	CGWCG	3 cut(s)	26, 65, 206
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	134, 224
KspI	CCGCGG	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	49, 175
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	9 cut(s)	51, 87, 123, 150, 164, 178, 246, 259, 285
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	63
MalI	GATC	2 cut(s)	51, 177
MboI	GATC	2 cut(s)	49, 175
MboII	GAAGA	2 cut(s)	194, 284
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	168, 261
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	3 cut(s)	130, 230, 232
MnlI	CCTC	1 cut(s)	106
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	4 cut(s)	38, 74, 233, 246
MspR9I	CCNGG	3 cut(s)	39, 75, 138
MunI	CAATTG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	2 cut(s)	39, 75
NdeII	GATC	2 cut(s)	49, 175
NlaIII	CATG	2 cut(s)	134, 224
PaeR7I	CTCGAG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	4, 305
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	40, 283
PspXI	VCTCGAGB	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	62
SacII	CCGCGG	1 cut(s)	282
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	49, 175
Sau96I	GGNCC	2 cut(s)	40, 283
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	3 cut(s)	39, 75, 138
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	5 cut(s)	13, 66, 117, 139, 189
SfaNI	GCATC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	110
Sfr303I	CCGCGG	1 cut(s)	282
SgrBI	CCGCGG	1 cut(s)	282
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	168, 261
SsiI	CCGC	3 cut(s)	194, 279, 281
StyD4I	CCNGG	3 cut(s)	37, 73, 136
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	4 cut(s)	7, 60, 111, 159
TasI	AATT	2 cut(s)	168, 261
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	4, 305
TscAI	CASTG	1 cut(s)	315
TspDTI	ATGAA	3 cut(s)	17, 147, 285
TspRI	CASTG	1 cut(s)	315
Tth111I	GACNNNGTC	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.