Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Reverse (-)

21457013 .. 21458777

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1221600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGTTTTCTCTCAAACCCTGTTTCCAATTTCTCCCTCTATCTGCTTCTGTTCTTCTTTCTCATCAGTTTTGAGCTCATCCCAGTTGCTCAATCTGCCAGTGACATCACCTCCTTGGTTTACAAGGGCTGTGCAAAGCAGACATTTTCTGATCCAACAGGGGTCTACTCCCAAGCCCTCTCAGCCCTCTTTGGGTCCCTGGTGCAGCAGTCCTCCAAGGCCAAGTTCTTCAAGACCAACACAGGCAGTGGCCAAACCACCATCTCAGGGCTCTTCCAATGCAGAGGTGATCTCAGCAACTCTGACTGCTACACCTGTGTGAGCAAATTGCCCCAAATGTCTGACAATCTCTGCGGCAAAACCATTGCTGCTAGGGTTCAGCTCATTGGGTGCTACATGCTCTATGAAATCTCAGGTTTTGCCCAAATTTCAGGCATGGAAATGCTGTACAAAACCTGTGGGGGGACTAATGTGGCAGGGTCAGGGTTTGAGGAGAGGAGGGACACTGCCTTTAGTGTTTTGGAGAATGGGGTTGTGAGTGGCCATGGATTTTACACCACAAACTATCAACAGGTTTATGTTTTGGGGCAGTGCCAGGGAGATGTTGGGGACTCAGATTGTGGGGAGTGTATGAAGAGTGGGGTGCAGAGAGCTCAGGTTGAATGTGGGAGTGCAATTTCTGGCCAAGTCTATCTCCATAAGTGCTTTCTCAGCTATAGTTATTACCCTAATGGGGTTCCCAGGAGATCATCCTCTTCTTCCTCATCATCCTCTTCATCTTCATCAGGGTCAGGAAATACAGGGAAGACAGTGGCTATAATTTTAGGAGGAGCAGCAGGAGTTGGATTCCTAGTCATATTTTTGTTGTTTGCCAGAAATTTGATGAAGAAGCATGATGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

302

Amino Acids

32.15

Weight (kDa)

7.92

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	44 - 136	3.3e-15	Salt stress response/antifungal
Stress-antifung	PF01657	155 - 241	1.8e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	3 cut(s)	250, 541, 682
AcsI	RAATTY	2 cut(s)	426, 877
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	4 cut(s)	192, 267, 462, 733
AgsI	TTSAA	2 cut(s)	232, 662
AjnI	CCWGG	3 cut(s)	198, 594, 740
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	76, 382, 653, 714
AluI	AGCT	4 cut(s)	76, 382, 653, 714
Alw21I	GWGCWC	2 cut(s)	78, 655
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	4 cut(s)	219, 250, 541, 682
ApeKI	GCWGC	3 cut(s)	205, 368, 833
ApoI	RAATTY	2 cut(s)	426, 877
AspS9I	GGNCC	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	100, 299
AvaII	GGWCC	1 cut(s)	195
BalI	TGGCCA	3 cut(s)	252, 543, 684
BanII	GRGCYC	3 cut(s)	78, 273, 655
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	2 cut(s)	78, 655
BbvI	GCAGC	3 cut(s)	217, 355, 845
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	3 cut(s)	200, 596, 742
BfaI	CTAG	2 cut(s)	372, 851
BfmI	CTRYAG	1 cut(s)	715
BisI	GCNGC	4 cut(s)	206, 355, 369, 834
BlsI	GCNGC	4 cut(s)	207, 356, 370, 835
Bme1390I	CCNGG	3 cut(s)	200, 596, 742
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	3 cut(s)	196, 197, 738
BmrFI	CCNGG	3 cut(s)	200, 596, 742
BmrI	ACTGGG	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	812
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
Bpu10I	CCTNAGC	1 cut(s)	654
BsaJI	CCNNGG	6 cut(s)	114, 198, 216, 544, 595, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 267, 462, 733
Bse1I	ACTGG	2 cut(s)	83, 99
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	200, 596, 742
BseDI	CCNNGG	6 cut(s)	114, 198, 216, 544, 595, 740
BseGI	GGATG	3 cut(s)	78, 749, 767
BseLI	CCNNNNNNNGG	4 cut(s)	192, 267, 462, 733
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	7 cut(s)	195, 279, 307, 426, 627, 668, 724
BseNI	ACTGG	2 cut(s)	83, 99
BseRI	GAGGAG	3 cut(s)	506, 511, 843
BseXI	GCAGC	3 cut(s)	217, 355, 845
BsgI	GTGCAG	2 cut(s)	224, 665
BshFI	GGCC	4 cut(s)	221, 252, 543, 684
BsiHKAI	GWGCWC	2 cut(s)	78, 655
BslFI	GGGAC	4 cut(s)	181, 478, 515, 623
BslI	CCNNNNNNNGG	4 cut(s)	192, 267, 462, 733
BsmFI	GGGAC	4 cut(s)	181, 478, 515, 623
BsnI	GGCC	4 cut(s)	221, 252, 543, 684
Bsp1286I	GDGCHC	3 cut(s)	78, 273, 655
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	151, 289, 746
Bsp19I	CCATGG	1 cut(s)	544
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	4 cut(s)	221, 252, 543, 684
BspCNI	CTCAG	7 cut(s)	194, 278, 306, 425, 626, 667, 723
BspLI	GGNNCC	3 cut(s)	196, 197, 738
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	83, 99
BssECI	CCNNGG	6 cut(s)	114, 198, 216, 544, 595, 740
BssMI	GATC	3 cut(s)	151, 289, 746
BssT1I	CCWWGG	3 cut(s)	114, 216, 544
Bst2UI	CCWGG	3 cut(s)	200, 596, 742
Bst4CI	ACNGT	1 cut(s)	811
Bst6I	CTCTTC	4 cut(s)	278, 629, 760, 778
BstAUI	TGTACA	1 cut(s)	447
BstDEI	CTNAG	7 cut(s)	181, 265, 293, 412, 613, 654, 710
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	78, 749, 767
BstKTI	GATC	3 cut(s)	154, 292, 749
BstMBI	GATC	3 cut(s)	151, 289, 746
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 182, 711
BstNI	CCWGG	3 cut(s)	200, 596, 742
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	3 cut(s)	198, 594, 740
BstSFI	CTRYAG	1 cut(s)	715
BstV1I	GCAGC	3 cut(s)	217, 355, 845
BstV2I	GAAGAC	1 cut(s)	812
BsuRI	GGCC	4 cut(s)	221, 252, 543, 684
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	78, 749, 767
BtsI	GCAGTG	3 cut(s)	253, 504, 596
BtsIMutI	CAGTG	5 cut(s)	106, 253, 504, 596, 816
Cfr13I	GGNCC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	448
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	4 cut(s)	397, 436, 545, 893
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	7 cut(s)	181, 265, 293, 412, 613, 654, 710
DpnI	GATC	3 cut(s)	153, 291, 748
DpnII	GATC	3 cut(s)	151, 289, 746
EaeI	YGGCCR	3 cut(s)	250, 541, 682
Eam1104I	CTCTTC	4 cut(s)	278, 629, 760, 778
EarI	CTCTTC	4 cut(s)	278, 629, 760, 778
Ecl136II	GAGCTC	2 cut(s)	76, 653
Eco130I	CCWWGG	3 cut(s)	114, 216, 544
Eco24I	GRGCYC	3 cut(s)	78, 273, 655
Eco47I	GGWCC	1 cut(s)	195
Eco53kI	GAGCTC	2 cut(s)	76, 653
EcoICRI	GAGCTC	2 cut(s)	76, 653
EcoO109I	RGGNCCY	1 cut(s)	195
EcoRII	CCWGG	3 cut(s)	198, 594, 740
EcoT14I	CCWWGG	3 cut(s)	114, 216, 544
EcoT38I	GRGCYC	3 cut(s)	78, 273, 655
ErhI	CCWWGG	3 cut(s)	114, 216, 544
FaeI	CATG	4 cut(s)	400, 439, 548, 896
FaqI	GGGAC	4 cut(s)	181, 478, 515, 623
FatI	CATG	4 cut(s)	396, 435, 544, 892
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	206, 355, 369, 834
FokI	GGATG	3 cut(s)	65, 736, 754
FriOI	GRGCYC	3 cut(s)	78, 273, 655
Fsp4HI	GCNGC	4 cut(s)	206, 355, 369, 834
FspBI	CTAG	2 cut(s)	372, 851
GluI	GCNGC	4 cut(s)	206, 355, 369, 834
HaeIII	GGCC	4 cut(s)	221, 252, 543, 684
Hin1II	CATG	4 cut(s)	400, 439, 548, 896
HinfI	GANTC	2 cut(s)	611, 846
HphI	GGTGA	2 cut(s)	100, 299
Hpy166II	GTNNAC	2 cut(s)	121, 166
Hpy188I	TCNGA	4 cut(s)	151, 304, 343, 616
Hpy188III	TCNNGA	2 cut(s)	232, 792
Hpy8I	GTNNAC	2 cut(s)	121, 166
HpyCH4III	ACNGT	1 cut(s)	811
HpyCH4V	TGCA	5 cut(s)	134, 205, 282, 646, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 182, 711
HpyF3I	CTNAG	7 cut(s)	181, 265, 293, 412, 613, 654, 710
Hsp92II	CATG	4 cut(s)	400, 439, 548, 896
KflI	GGGWCCC	1 cut(s)	195
Kzo9I	GATC	3 cut(s)	151, 289, 746
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	830
Lsp1109I	GCAGC	3 cut(s)	217, 355, 845
MaeI	CTAG	2 cut(s)	372, 851
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	153, 291, 748
MboI	GATC	3 cut(s)	151, 289, 746
MhlI	GDGCHC	3 cut(s)	78, 273, 655
MlsI	TGGCCA	3 cut(s)	252, 543, 684
MluCI	AATT	6 cut(s)	28, 326, 426, 675, 819, 877
MluNI	TGGCCA	3 cut(s)	252, 543, 684
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	2 cut(s)	179, 823
Mox20I	TGGCCA	3 cut(s)	252, 543, 684
MscI	TGGCCA	3 cut(s)	252, 543, 684
MslI	CAYNNNNRTG	2 cut(s)	317, 440
Msp20I	TGGCCA	3 cut(s)	252, 543, 684
MspR9I	CCNGG	3 cut(s)	200, 596, 742
MvaI	CCWGG	3 cut(s)	200, 596, 742
MwoI	GCNNNNNNNGC	3 cut(s)	95, 182, 711
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	3 cut(s)	151, 289, 746
NlaIII	CATG	4 cut(s)	400, 439, 548, 896
NlaIV	GGNNCC	3 cut(s)	196, 197, 738
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	846
PkrI	GCNGC	4 cut(s)	207, 356, 370, 835
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PpuMI	RGGWCCY	1 cut(s)	195
Psp124BI	GAGCTC	2 cut(s)	78, 655
Psp5II	RGGWCCY	1 cut(s)	195
Psp6I	CCWGG	3 cut(s)	198, 594, 740
PspGI	CCWGG	3 cut(s)	198, 594, 740
PspN4I	GGNNCC	3 cut(s)	196, 197, 738
PspPI	GGNCC	1 cut(s)	195
PspPPI	RGGWCCY	1 cut(s)	195
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	2 cut(s)	317, 440
SacI	GAGCTC	2 cut(s)	78, 655
SapI	GCTCTTC	1 cut(s)	278
SatI	GCNGC	4 cut(s)	206, 355, 369, 834
Sau3AI	GATC	3 cut(s)	151, 289, 746
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	3 cut(s)	200, 596, 742
SduI	GDGCHC	3 cut(s)	78, 273, 655
SfcI	CTRYAG	1 cut(s)	715
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	2 cut(s)	317, 440
Sse9I	AATT	6 cut(s)	28, 326, 426, 675, 819, 877
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	2 cut(s)	372, 851
SstI	GAGCTC	2 cut(s)	78, 655
StyD4I	CCNGG	3 cut(s)	198, 594, 740
StyI	CCWWGG	3 cut(s)	114, 216, 544
TaaI	ACNGT	1 cut(s)	811
TasI	AATT	6 cut(s)	28, 326, 426, 675, 819, 877
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	846
TscAI	CASTG	5 cut(s)	106, 253, 511, 596, 816
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	3 cut(s)	205, 368, 833
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	420, 647, 765, 771, 899
TspRI	CASTG	5 cut(s)	106, 253, 511, 596, 816
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	2 cut(s)	426, 877
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	372, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.