Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008259

Physical Location & Seq

Genomic Coordinates Forward (+)

4189930 .. 4192363

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGGAGGCCTCCACCGCACTCTCCCGCATCGGCCTCGCCGGCCTCGCCGTCATGGGCCAGAACCTCGCCCTCAACATCGCCGAGAAAGGCTTCCCCATTTCCGTCTACAACCGCACCTCCTCCAAGGTCGACGAGACCGTCCACCGCGCCGCCACCGAGGGCGACCTCCCTCTCTCCGGCCAGTACACCCCCAAAGACTTCGTCCTCTCTCTCCAGCGCCCCCGATCCGTCATCATCCTCGTCAAGGCCGGCGCCCCCGTCGACCAGACCATCGCCGCCTTGTCCGCCTACATGGAGCCCGGCGACGCCATCATCGACGGCGGCAACGAGTGGTACGAGAACACCGAGCGCCGCATCCACGAGGCTTCCGCCAAGGGCCTCCTCTACCTCGGCATGGGCGTCTCCGGCGGCGAGGAAGGCGCTCGCCACGGCCCCAGCCTCATGCCCGGGGGGTCCCACCAAGCCTACTCCAATGTCCAGGACATTCTCCACAAGGTCGCCGCCCAGGTCGAGGACGGGCCCTGCGTCACCTACATCGGCGAGGGCGGCTCCGGCAACTTCGTCAAGATGGTCCACAACGGGATCGAGTACGGCGACATGCAGCTCATTTCCGAGGCCTACGACGTGTTGAAGAACATCGGCGGCCTCTCCAACTCCGAGCTGGCGCAAATCTTCGAGGAGTGGAACAGGGGAGAGCTGGAGAGCTTCTTAGTCGAGATTACCGCCGATATTTTCAAGGTCAAGGACGATTTGGCCGACGGCTTTTTGGTCGACAAGTTGCTGGATAAGACTGGGATGAAGGGGACTGGCAAATGGACGGTTCAGCAGGCTGCTGAGCTGTCCGTGGCCGCTCCTACTATTGCGGCCTCGCTTGATTGTAGATTCTTGAGTGGGTTGAAGGAGGAGAGGGAGAGCGCCGAGGAGGCTTTGAAGGAAGCTGGTTTCAAGGAGGAGATTGGGAATGTGGTTAGTGGGATTGATAAGAAGAGGTTGATCGATGATGTGAGGCAGGCTTTGTATGCTTCCAAGATTTGTAGCTATGCTCAGGGGATGAACTTGTTGAGGGCTAAGAGTATGGAGAAGGGATGGAATTTGAATTTGGGGGAATTGGCTAGGATTTGGAAAGGAGGCTGTATCATAAGAGCGGTGTTCTTGGATAGGATTAAGAACGCGTACCAGAGGAATCAGGGTCTGCCTAACTTGATTGTTGATCCCGACTTTGCTAAGGAAATGGTGCAGAGGCAAGCCGCGTGGAGGAGAGTTGTGGGGTTGGCTGTGGCCGCTGGGATTAGTACTCCAGGAATGTGTGCTAGTTTGTCATACTTTGATACATATAGGCGTGGTAGGCTTCCGGCTAATCTCGTTCAGGCTCAAAGAGATTTGTTTGGAGCGCATACTTATGAGAGGGTTGATCGCCCCGGATCATTTCATACAGAGTGGACTAAACTTGCTCAGAAGAGTTCGGGTCCCGGGACCCTGGGATTATTACGAAATTCACATCCGCCTGAGGAAGAGTTCAGTTATGATTTATCAGTGTCTATGGATGTTGGTGGAAGACCAGGGAGTGGTAATTTTGGTGGAAGACAAACTCCTTCAATTCCCTGGAACAAAAGAAGTGTGTGTCAATGGCTTCCAGTAGGAGTGAAGTGTAAGGTAATGCAACACCCTCCTCATTGTTCTCGTTGTTCTATCTGCAACAACTGTGTGGAGCGCTTTGATCACCACTGCCCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

579

Amino Acids

63.15

Weight (kDa)

6.27

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	9 - 180	4.8e-46	NAD binding domain of 6-phosphogluconate dehydrogenase
6PGD	PF00393	185 - 480	3e-124	6-phosphogluconate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64190 AT5G41670 AT5G41670 AT5G41670 AT5G41670
fragaria_vesca	FvH4_4g04820
malus_domestica	MD06G1098700.v1.1 MD14G1117900.v1.1
prunus_persica	Prupe.5G112300_v2.0.a1 Prupe.5G112300_v2.0.a1
pyrus_communis	pycom06g09400
rosa_chinensis	RchiOBHm_Chr7g0195821
rosa_laevigata	RLG00000004086
rosa_multiflora	Rmu_sc0002445.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260070 Rroxscaffold_4G00304940
rosa_rugosa	Rorug07G0026400
rosa_samantha	Rh1DG221600 Rh7AG154400 Rh7BG156200 Rh7CG159900 Rh7DG155500
rosa_wichuraiana	Rw7G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	251
AccB7I	CCANNNNNTGG	1 cut(s)	1565
AccBSI	CCGCTC	2 cut(s)	851, 1145
AccI	GTMKAC	4 cut(s)	105, 129, 261, 771
AccII	CGCG	3 cut(s)	147, 1172, 1250
AclWI	GGATC	4 cut(s)	219, 590, 1205, 1429
AcoI	YGGCCR	4 cut(s)	178, 753, 846, 1278
AcsI	RAATTY	3 cut(s)	1090, 1096, 1492
AcyI	GRCGYC	3 cut(s)	252, 306, 399
AfaI	GTAC	5 cut(s)	185, 335, 590, 1175, 1294
AfeI	AGCGCT	1 cut(s)	1712
AfiI	CCNNNNNNNGG	6 cut(s)	176, 244, 394, 511, 1254, 1565
AflIII	ACRYGT	2 cut(s)	624, 1170
AgsI	TTSAA	7 cut(s)	631, 736, 898, 931, 946, 1096, 1596
AjiI	CACGTC	1 cut(s)	625
AjnI	CCWGG	6 cut(s)	477, 504, 1297, 1476, 1558, 1601
AjuI	GAANNNNNNNTTGG	2 cut(s)	1082, 1114
AluBI	AGCT	7 cut(s)	604, 661, 697, 705, 838, 938, 1038
AluI	AGCT	7 cut(s)	604, 661, 697, 705, 838, 938, 1038
Alw26I	GTCTC	2 cut(s)	128, 406
AlwI	GGATC	4 cut(s)	219, 590, 1205, 1429
AlwNI	CAGNNNCTG	1 cut(s)	1192
Ama87I	CYCGRG	2 cut(s)	446, 1469
Aor51HI	AGCGCT	1 cut(s)	1712
ApaI	GGGCCC	1 cut(s)	522
ApeKI	GCWGC	2 cut(s)	601, 830
ApoI	RAATTY	3 cut(s)	1090, 1096, 1492
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	9 cut(s)	149, 219, 254, 351, 422, 667, 917, 1393, 1713
AspS9I	GGNCC	9 cut(s)	55, 376, 431, 453, 518, 519, 571, 1466, 1473
AsuC2I	CCSGG	6 cut(s)	300, 447, 448, 1419, 1470, 1471
AsuHPI	GGTGA	2 cut(s)	520, 1712
AvaI	CYCGRG	2 cut(s)	446, 1469
AvaII	GGWCC	4 cut(s)	453, 571, 1466, 1473
AxyI	CCTNAGG	1 cut(s)	1506
BaeGI	GKGCMC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	2 cut(s)	300, 522
BauI	CACGAG	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	1561, 1588
BbvI	GCAGC	2 cut(s)	613, 817
BccI	CCATC	4 cut(s)	278, 317, 562, 1080
BceAI	ACGGC	5 cut(s)	32, 334, 445, 607, 775
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	6 cut(s)	479, 506, 1299, 1478, 1560, 1603
BclI	TGATCA	1 cut(s)	1717
BcnI	CCSGG	6 cut(s)	300, 447, 448, 1419, 1470, 1471
BcoDI	GTCTC	2 cut(s)	128, 406
BfaI	CTAG	2 cut(s)	1113, 1311
BfoI	RGCGCY	6 cut(s)	220, 255, 352, 423, 918, 1714
BglI	GCCNNNNNGGC	2 cut(s)	39, 923
BlpI	GCTNAGC	1 cut(s)	834
BmcAI	AGTACT	1 cut(s)	1294
Bme18I	GGWCC	4 cut(s)	453, 571, 1466, 1473
BmeT110I	CYCGRG	2 cut(s)	446, 1469
BmgBI	CACGTC	1 cut(s)	625
BmgT120I	GGNCC	9 cut(s)	55, 376, 431, 453, 518, 519, 571, 1466, 1473
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	2 cut(s)	36, 363
BmuI	ACTGGG	1 cut(s)	801
BpiI	GAAGAC	2 cut(s)	1561, 1588
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	3 cut(s)	197, 719, 1281
Bpu10I	CCTNAGC	2 cut(s)	1044, 1224
Bpu1102I	GCTNAGC	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	907
BpuMI	CCSGG	6 cut(s)	300, 447, 448, 1419, 1470, 1471
Bsa29I	ATCGAT	1 cut(s)	996
BsaHI	GRCGYC	3 cut(s)	252, 306, 399
BsaI	GGTCTC	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 244, 394, 511, 1254, 1565
Bse118I	RCCGGY	2 cut(s)	38, 248
Bse1I	ACTGG	4 cut(s)	181, 796, 811, 1634
Bse21I	CCTNAGG	1 cut(s)	1506
BseBI	CCWGG	6 cut(s)	479, 506, 1299, 1478, 1560, 1603
BseCI	ATCGAT	1 cut(s)	996
BseGI	GGATG	7 cut(s)	234, 354, 801, 1056, 1091, 1498, 1549
BseLI	CCNNNNNNNGG	6 cut(s)	176, 244, 394, 511, 1254, 1565
BseMII	CTCAG	4 cut(s)	825, 1058, 1466, 1497
BseNI	ACTGG	4 cut(s)	181, 796, 811, 1634
BseRI	GAGGAG	8 cut(s)	109, 371, 692, 917, 935, 965, 1270, 1659
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	613, 817
BseYI	CCCAGC	2 cut(s)	434, 1283
BsgI	GTGCAG	1 cut(s)	1256
Bsh1236I	CGCG	3 cut(s)	147, 1172, 1250
BshNI	GGYRCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	996
BsiHKCI	CYCGRG	2 cut(s)	446, 1469
BslFI	GGGAC	4 cut(s)	439, 817, 1452, 1486
BslI	CCNNNNNNNGG	6 cut(s)	176, 244, 394, 511, 1254, 1565
BsmAI	GTCTC	2 cut(s)	128, 406
BsmBI	CGTCTC	1 cut(s)	406
BsmFI	GGGAC	4 cut(s)	439, 817, 1452, 1486
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	2 cut(s)	446, 1469
Bsp120I	GGGCCC	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	300, 522
Bsp143I	GATC	7 cut(s)	224, 582, 993, 1210, 1411, 1421, 1717
Bsp1720I	GCTNAGC	1 cut(s)	834
BspCNI	CTCAG	4 cut(s)	826, 1057, 1465, 1498
BspDI	ATCGAT	1 cut(s)	996
BspFNI	CGCG	3 cut(s)	147, 1172, 1250
BspPI	GGATC	4 cut(s)	219, 590, 1205, 1429
BspT107I	GGYRCC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	128
BsrBI	CCGCTC	2 cut(s)	851, 1145
BsrFI	RCCGGY	2 cut(s)	38, 248
BsrI	ACTGG	4 cut(s)	181, 796, 811, 1634
BssAI	RCCGGY	2 cut(s)	38, 248
BssMI	GATC	7 cut(s)	224, 582, 993, 1210, 1411, 1421, 1717
BssNI	GRCGYC	3 cut(s)	252, 306, 399
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	3 cut(s)	123, 372, 1730
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	6 cut(s)	479, 506, 1299, 1478, 1560, 1603
Bst4CI	ACNGT	3 cut(s)	139, 820, 1703
Bst6I	CTCTTC	3 cut(s)	980, 1451, 1506
BstACI	GRCGYC	3 cut(s)	252, 306, 399
BstC8I	GCNNGC	7 cut(s)	40, 250, 424, 663, 828, 1011, 1245
BstDEI	CTNAG	7 cut(s)	709, 834, 1044, 1068, 1224, 1452, 1506
BstDSI	CCRYGG	2 cut(s)	427, 843
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	7 cut(s)	234, 354, 801, 1056, 1091, 1498, 1549
BstFNI	CGCG	3 cut(s)	147, 1172, 1250
BstH2I	RGCGCY	6 cut(s)	220, 255, 352, 423, 918, 1714
BstHHI	GCGC	9 cut(s)	149, 219, 254, 351, 422, 667, 917, 1393, 1713
BstKTI	GATC	7 cut(s)	227, 585, 996, 1213, 1414, 1424, 1720
BstMAI	GTCTC	2 cut(s)	128, 406
BstMBI	GATC	7 cut(s)	224, 582, 993, 1210, 1411, 1421, 1717
BstNI	CCWGG	6 cut(s)	479, 506, 1299, 1478, 1560, 1603
BstNSI	RCATGY	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	3 cut(s)	147, 1172, 1250
BstV1I	GCAGC	2 cut(s)	613, 817
BstV2I	GAAGAC	2 cut(s)	1561, 1588
Bsu15I	ATCGAT	1 cut(s)	996
Bsu36I	CCTNAGG	1 cut(s)	1506
BsuTUI	ATCGAT	1 cut(s)	996
BtgI	CCRYGG	2 cut(s)	427, 843
BtgZI	GCGATG	2 cut(s)	61, 256
BtrI	CACGTC	1 cut(s)	625
BtsCI	GGATG	7 cut(s)	234, 354, 801, 1056, 1091, 1498, 1549
BtsI	GCAGTG	1 cut(s)	1723
BtsIMutI	CAGTG	2 cut(s)	1539, 1723
Cac8I	GCNNGC	7 cut(s)	40, 250, 424, 663, 828, 1011, 1245
CaiI	CAGNNNCTG	1 cut(s)	1192
CfoI	GCGC	9 cut(s)	149, 219, 254, 351, 422, 667, 917, 1393, 1713
Cfr10I	RCCGGY	2 cut(s)	38, 248
Cfr13I	GGNCC	9 cut(s)	55, 376, 431, 453, 518, 519, 571, 1466, 1473
Cfr9I	CCCGGG	2 cut(s)	446, 1469
ClaI	ATCGAT	1 cut(s)	996
CseI	GACGC	3 cut(s)	314, 388, 514
Csp6I	GTAC	5 cut(s)	184, 334, 589, 1174, 1293
CspCI	CAANNNNNGTGG	3 cut(s)	1232, 1267, 1712
CviAII	CATG	5 cut(s)	52, 292, 394, 442, 598
CviQI	GTAC	5 cut(s)	184, 334, 589, 1174, 1293
DdeI	CTNAG	7 cut(s)	709, 834, 1044, 1068, 1224, 1452, 1506
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	7 cut(s)	226, 584, 995, 1212, 1413, 1423, 1719
DpnII	GATC	7 cut(s)	224, 582, 993, 1210, 1411, 1421, 1717
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	4 cut(s)	178, 753, 846, 1278
Eam1104I	CTCTTC	3 cut(s)	980, 1451, 1506
EarI	CTCTTC	3 cut(s)	980, 1451, 1506
EciI	GGCGGA	3 cut(s)	274, 358, 1491
Eco130I	CCWWGG	3 cut(s)	123, 372, 1730
Eco147I	AGGCCT	2 cut(s)	8, 617
Eco24I	GRGCYC	2 cut(s)	300, 522
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	4 cut(s)	453, 571, 1466, 1473
Eco47III	AGCGCT	1 cut(s)	1712
Eco81I	CCTNAGG	1 cut(s)	1506
Eco88I	CYCGRG	2 cut(s)	446, 1469
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO109I	RGGNCCY	5 cut(s)	376, 453, 519, 1466, 1473
EcoRII	CCWGG	6 cut(s)	477, 504, 1297, 1476, 1558, 1601
EcoT14I	CCWWGG	3 cut(s)	123, 372, 1730
EcoT38I	GRGCYC	2 cut(s)	300, 522
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	3 cut(s)	123, 372, 1730
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	5 cut(s)	55, 295, 397, 445, 601
FaqI	GGGAC	4 cut(s)	439, 817, 1452, 1486
FatI	CATG	5 cut(s)	51, 291, 393, 441, 597
FauI	CCCGC	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	1717
FblI	GTMKAC	4 cut(s)	105, 129, 261, 771
FokI	GGATG	7 cut(s)	221, 341, 808, 1063, 1098, 1485, 1556
FriOI	GRGCYC	2 cut(s)	300, 522
FspBI	CTAG	2 cut(s)	1113, 1311
GlaI	GCGC	9 cut(s)	148, 218, 253, 350, 421, 666, 916, 1392, 1712
GsaI	CCCAGC	2 cut(s)	438, 1287
GsuI	CTGGAG	3 cut(s)	197, 719, 1281
HaeII	RGCGCY	6 cut(s)	220, 255, 352, 423, 918, 1714
HgaI	GACGC	3 cut(s)	314, 388, 514
HhaI	GCGC	9 cut(s)	149, 219, 254, 351, 422, 667, 917, 1393, 1713
Hin1I	GRCGYC	3 cut(s)	252, 306, 399
Hin1II	CATG	5 cut(s)	55, 295, 397, 445, 601
Hin6I	GCGC	9 cut(s)	147, 217, 252, 349, 420, 665, 915, 1391, 1711
HinP1I	GCGC	9 cut(s)	147, 217, 252, 349, 420, 665, 915, 1391, 1711
HincII	GTYRAC	3 cut(s)	130, 262, 772
HindII	GTYRAC	3 cut(s)	130, 262, 772
HinfI	GANTC	2 cut(s)	882, 1183
HphI	GGTGA	2 cut(s)	520, 1712
Hpy166II	GTNNAC	8 cut(s)	106, 130, 142, 186, 262, 574, 772, 1440
Hpy188I	TCNGA	3 cut(s)	613, 658, 1455
Hpy188III	TCNNGA	4 cut(s)	565, 715, 886, 1214
Hpy8I	GTNNAC	8 cut(s)	106, 130, 142, 186, 262, 574, 772, 1440
Hpy99I	CGWCG	6 cut(s)	134, 263, 308, 320, 626, 761
HpyAV	CCTTC	6 cut(s)	410, 793, 892, 925, 1075, 1602
HpyCH4III	ACNGT	3 cut(s)	139, 820, 1703
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	4 cut(s)	601, 1237, 1660, 1695
HpyF3I	CTNAG	7 cut(s)	709, 834, 1044, 1068, 1224, 1452, 1506
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	3 cut(s)	252, 306, 399
Hsp92II	CATG	5 cut(s)	55, 295, 397, 445, 601
HspAI	GCGC	9 cut(s)	147, 217, 252, 349, 420, 665, 915, 1391, 1711
KasI	GGCGCC	1 cut(s)	251
KflI	GGGWCCC	3 cut(s)	453, 1466, 1473
KroI	GCCGGC	2 cut(s)	38, 248
KroNI	GCCGGC	2 cut(s)	40, 250
Ksp22I	TGATCA	1 cut(s)	1717
Kzo9I	GATC	7 cut(s)	224, 582, 993, 1210, 1411, 1421, 1717
LmnI	GCTCC	5 cut(s)	295, 554, 856, 1388, 1708
Lsp1109I	GCAGC	2 cut(s)	613, 817
LweI	GCATC	2 cut(s)	36, 363
MaeI	CTAG	2 cut(s)	1113, 1311
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	7 cut(s)	226, 584, 995, 1212, 1413, 1423, 1719
MbiI	CCGCTC	2 cut(s)	851, 1145
MboI	GATC	7 cut(s)	224, 582, 993, 1210, 1411, 1421, 1717
MboII	GAAGA	7 cut(s)	643, 664, 997, 1468, 1523, 1566, 1593
MhlI	GDGCHC	2 cut(s)	300, 522
MluCI	AATT	6 cut(s)	1090, 1096, 1106, 1492, 1570, 1596
MluI	ACGCGT	1 cut(s)	1170
Mly113I	GGCGCC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	675
MroNI	GCCGGC	2 cut(s)	38, 248
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	1164
MslI	CAYNNNNRTG	1 cut(s)	1398
MspA1I	CMGCKG	1 cut(s)	1283
MvaI	CCWGG	6 cut(s)	479, 506, 1299, 1478, 1560, 1603
MvnI	CGCG	3 cut(s)	147, 1172, 1250
NaeI	GCCGGC	2 cut(s)	40, 250
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	6 cut(s)	300, 447, 448, 1419, 1470, 1471
NdeII	GATC	7 cut(s)	224, 582, 993, 1210, 1411, 1421, 1717
NgoMIV	GCCGGC	2 cut(s)	38, 248
NlaIII	CATG	5 cut(s)	55, 295, 397, 445, 601
NmeAIII	GCCGAG	3 cut(s)	106, 369, 943
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	601
PasI	CCCWGGG	1 cut(s)	1477
PceI	AGGCCT	2 cut(s)	8, 617
PcsI	WCGNNNNNNNCGW	9 cut(s)	135, 312, 324, 333, 342, 396, 522, 591, 753
PdiI	GCCGGC	2 cut(s)	40, 250
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	882, 1183
PflFI	GACNNNGTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	1565
PfoI	TCCNGGA	2 cut(s)	477, 1297
PluTI	GGCGCC	1 cut(s)	255
PpuMI	RGGWCCY	3 cut(s)	453, 1466, 1473
Psp5II	RGGWCCY	3 cut(s)	453, 1466, 1473
Psp6I	CCWGG	6 cut(s)	477, 504, 1297, 1476, 1558, 1601
PspFI	CCCAGC	2 cut(s)	434, 1283
PspGI	CCWGG	6 cut(s)	477, 504, 1297, 1476, 1558, 1601
PspOMI	GGGCCC	1 cut(s)	518
PspPI	GGNCC	9 cut(s)	55, 376, 431, 453, 518, 519, 571, 1466, 1473
PspPPI	RGGWCCY	3 cut(s)	453, 1466, 1473
PstNI	CAGNNNCTG	1 cut(s)	1192
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	5 cut(s)	185, 335, 590, 1175, 1294
RsaNI	GTAC	5 cut(s)	184, 334, 589, 1174, 1293
RseI	CAYNNNNRTG	1 cut(s)	1398
SalI	GTCGAC	3 cut(s)	128, 260, 770
SaqAI	TTAA	1 cut(s)	1164
Sau3AI	GATC	7 cut(s)	224, 582, 993, 1210, 1411, 1421, 1717
Sau96I	GGNCC	9 cut(s)	55, 376, 431, 453, 518, 519, 571, 1466, 1473
ScaI	AGTACT	1 cut(s)	1294
SduI	GDGCHC	2 cut(s)	300, 522
SfaNI	GCATC	2 cut(s)	36, 363
SfiI	GGCCNNNNNGGCC	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	253
SinI	GGWCC	4 cut(s)	453, 571, 1466, 1473
SmaI	CCCGGG	2 cut(s)	448, 1471
SmiMI	CAYNNNNRTG	1 cut(s)	1398
SmlI	CTYRAG	1 cut(s)	886
SmoI	CTYRAG	1 cut(s)	886
Sse9I	AATT	6 cut(s)	1090, 1096, 1106, 1492, 1570, 1596
SseBI	AGGCCT	2 cut(s)	8, 617
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	2 cut(s)	1113, 1311
StuI	AGGCCT	2 cut(s)	8, 617
StyI	CCWWGG	3 cut(s)	123, 372, 1730
TaaI	ACNGT	3 cut(s)	139, 820, 1703
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	9 cut(s)	129, 261, 315, 510, 585, 675, 714, 771, 996
TasI	AATT	6 cut(s)	1090, 1096, 1106, 1492, 1570, 1596
TatI	WGTACW	2 cut(s)	183, 1292
TfiI	GAWTC	2 cut(s)	882, 1183
Tru1I	TTAA	1 cut(s)	1164
Tru9I	TTAA	1 cut(s)	1164
TscAI	CASTG	2 cut(s)	1539, 1730
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	2 cut(s)	601, 830
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	3 cut(s)	812, 1067, 1418
TspGWI	ACGGA	3 cut(s)	91, 217, 832
TspMI	CCCGGG	2 cut(s)	446, 1469
TspRI	CASTG	2 cut(s)	1539, 1730
Tth111I	GACNNNGTC	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	1565
VpaK11BI	GGWCC	4 cut(s)	453, 571, 1466, 1473
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	3 cut(s)	1090, 1096, 1492
XceI	RCATGY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XmaI	CCCGGG	2 cut(s)	446, 1469
XmiI	GTMKAC	4 cut(s)	105, 129, 261, 771
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	2 cut(s)	1113, 1311
ZrmI	AGTACT	1 cut(s)	1294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.