Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008259

Physical Location & Seq

Genomic Coordinates Forward (+)

1873078 .. 1878512

Gene Structure 5435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0026400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGGCTCCCTACACATTTCCCGCCATTTCTACCATTACCATCTTCACGCTCTTCTTCTTCTTCACCTTGTGTGTCCTCTCCTCATCATCATCGTCCACCATCGGAGTCGGCTACATATCGAGCGTTCTGGAACTTCAGGACCGCGAGAGGGCCTCTCCCTATGTCCAAGTCGCCGCCGCTCGCGGAGTACTCCGCCGCCTTCTTCCTTCCCAATCCTCCAGCTTCGACTTCCAAATCGTCTCTAAGGAGCAATGTGGTGGTGCTTCCTGCTTTATGATTAAGAACCATCCTTCTTTTCGTAGACGAGGGGATCCACAGATTCTGATTTCCGGAGTCACTGGAGTGGAGATTTTGGCTGGTCTACATTGGTATTTGAAGAATTGGTGTGGCTCACATATATCTTGGGATAAAACTGGTGGTGCGCAACTATTTTCAGTCCCAAAAGCAGGGTTTCTCTCTCATGTAGGAGATGGTGGCATTTTAGTCCAGAGACCTGTTCCTTGGAACTATTACCAGAATGCTGTCACATCTAGCTATTCTTTGGCTTGGTGGGACTGGAATAGATGGGAGAAGGAGATTGATATGATGGCCCTCCAGGGTATCAATTTGCCACTAGCATTTACAGGTCAAGAGGCTATATGGCAGAAAGTTTTCCAGAAATTTAATATGAGCAAATCAGATTTGGATGATTTCTTTGGAGGCCCTGCATTCCTTGCATGGTCTCGAATGGGAAATTTGCATGGATGGGGTGGACCTCTCCCGCAAAGTTGGCTTGATCAACAGCTGATTCTACAGAAAAAAATTCTCGACAGAATGTATGAACTTGGAATGACTCCAGTCCTTCCAGCATTTTCTGGGAATGTTCCTGCAGCACTCAAAACTATATATCCATCAGCAAAGATTACACAGTTAGGAAACTGGTTTTCTGTTAAGAGTGACCCTAGATGGACCTGCACTTACCTTCTTGATGCAACTGATCCCTTATTTGTTGAAATTGGGAAAACATTCATTGAGGAACAACTAAAAGAATATGGAAGGACCAGTCACATTTACAACTGTGATACTTTTGATGAGAATACTCCACCTGTTGATGATCCAGAGTACATCTCTGCATTAGGTAAAACAATATTTAAGGGACTGCAAAGTGGAGATAAGGACGGTGTATGGCTAATGCAGGGATGGTTATTTACATATGATCCATTCTGGAGGCCTGCACAGATGAAGGCACTCTTACATTCTGTTCCTGCAGGGAGGATGGTAGTCCTTGATCTGTTTGCTGAAGTGAAACCGATATGGACTACTTCAGAGCAGTTTTATGGTGTTCCTTACATCTGGAAAGTCATTGCTCCCTTTTATGATTGGGAAATCCCACAGTGTATGCTGCACAACTTTGCAGGAAACGTTGAGATGTACGGCGTTATGGATGCAATAGCATCTGGACCAATTGATGCTTGGACAAGTGAAAACTCAACCATGGTTGGGGTTGGAATGTCTATGGAAGGTATAGAACAGAACCCTGTTGTTTATGATCTCATGTCTGAGATGGCTTTTCAACAGAACAAAGTTGATGTTAAGGACTGGATTAATCTGTATTCAACGAGACGTTATGGTCGTGCAGTTCCTTTAGTGCAACATGCCTGGAGTATATTACATCATACCATCTATAATTGCACTGATGGTGCCTACGACAAAAATAGGGATGTGATTGTGGCATTTCCGGACGTTGATCCATCCTTTATAGCAAGACCGTCTCAAGGTTATTACCAAAATGAAAAATCATTAGTATCAAGAAGATCAGTGCTGAAGGAAATAACTGATTCATTTGAGCGACCTCATTTATGGTACTCGACTTCTGAAGTAGTACATGCATTAGAACTTTTTATTGCAAGTGGCGATGAACTCTCAGAAAGCAACACTTACAGGTATGACCTTGTTGACCTGACTAGACAAGCTTTGGCTAAGTATGCAAATCAGCTGTTTCTGAAGGTCATAGAAGCCTATCATTTAAATGATATCCTTGAAGTAGTTGGCCTCAGCCAGAAGTTTTTGGAACTGGTTGAAGATATGGACACACTCTTAGCATGCCATGATGGATTTCTTCTTGGACCATGGTTGGAAAGCGCAAAGAAACTCGCCCAAGACAAAGAGCAGGAAATACAGTTTGAATGGAATGCTAGAACTCAAATAACTATGTGGTTTGACAACACAGAAGAGGAAGCAAGTCTTCTTCGCGACTATGGAAACAAGTATTGGAGTGGGCTTCTGCGAGACTACTATGGTCCCCGAGCAGCCATATACTTCAAGTATCTGATAAAAAGCTTGGACGAGGGTAATGATTTTGACTTGAAGAACTGGAGGAGGGAGTGGATCAAGCTTACAAATGACTGGCAGAACAGCAGGAACACATTCCCGGTGAAAAGCACCGGAAATGCGGTGACTACTTCTCGGTTGCTTTTCGAAAAGTACTTACGAAGCGCTGACATAGAATCACTGGATGAAGCTGCTATTATGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

838

Amino Acids

95.75

Weight (kDa)

5.25

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAGLU_N	PF12971	58 - 143	6.2e-21	Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
NAGLU	PF05089	170 - 518	1.3e-135	Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
NAGLU_C	PF12972	527 - 821	3.9e-87	Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64190 AT5G41670 AT5G41670 AT5G41670 AT5G41670
fragaria_vesca	FvH4_4g04820
malus_domestica	MD06G1098700.v1.1 MD14G1117900.v1.1
prunus_persica	Prupe.5G112300_v2.0.a1 Prupe.5G112300_v2.0.a1
pyrus_communis	pycom06g09400
rosa_chinensis	RchiOBHm_Chr7g0195821
rosa_laevigata	RLG00000004086
rosa_multiflora	Rmu_sc0002445.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260070 Rroxscaffold_4G00304940
rosa_rugosa	Rorug07G0026400
rosa_samantha	Rh1DG221600 Rh7AG154400 Rh7BG156200 Rh7CG159900 Rh7DG155500
rosa_wichuraiana	Rw7G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1608
Acc16I	TGCGCA	1 cut(s)	423
Acc36I	ACCTGC	1 cut(s)	959
AccB1I	GGYRCC	1 cut(s)	1679
AccBSI	CCGCTC	1 cut(s)	179
AccI	GTMKAC	2 cut(s)	301, 361
AccII	CGCG	3 cut(s)	144, 183, 2232
AccIII	TCCGGA	2 cut(s)	329, 1717
AciI	CCGC	9 cut(s)	21, 142, 174, 177, 183, 193, 196, 761, 2432
AclI	AACGTT	1 cut(s)	1401
AclWI	GGATC	7 cut(s)	305, 318, 971, 1088, 1190, 1721, 2375
AcsI	RAATTY	3 cut(s)	659, 733, 801
AcuI	CTGAAG	6 cut(s)	119, 1287, 1299, 1823, 1875, 2003
AdeI	CACNNNGTG	1 cut(s)	69
AfaI	GTAC	6 cut(s)	189, 1103, 1412, 1844, 1863, 2465
AfeI	AGCGCT	1 cut(s)	2476
AfiI	CCNNNNNNNGG	4 cut(s)	148, 446, 1479, 1754
AgsI	TTSAA	9 cut(s)	376, 992, 1553, 1596, 2021, 2060, 2165, 2302, 2347
AjnI	CCWGG	2 cut(s)	594, 1637
AjuI	GAANNNNNNNTTGG	2 cut(s)	2233, 2265
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	8 cut(s)	222, 534, 784, 1952, 1975, 2319, 2374, 2501
AluI	AGCT	8 cut(s)	222, 534, 784, 1952, 1975, 2319, 2374, 2501
Alw26I	GTCTC	6 cut(s)	244, 484, 726, 1594, 1755, 2262
AlwI	GGATC	7 cut(s)	305, 318, 971, 1088, 1190, 1721, 2375
AlwNI	CAGNNNCTG	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	2283
Aor13HI	TCCGGA	2 cut(s)	329, 1717
Aor51HI	AGCGCT	1 cut(s)	2476
AoxI	GGCC	5 cut(s)	150, 588, 700, 1208, 2029
ApeKI	GCWGC	4 cut(s)	869, 1381, 2288, 2501
ApoI	RAATTY	3 cut(s)	659, 733, 801
AseI	ATTAAT	1 cut(s)	1584
Asp700I	GAANNNNTTC	3 cut(s)	650, 1004, 2405
AspLEI	GCGC	3 cut(s)	424, 2123, 2477
AsuC2I	CCSGG	1 cut(s)	2411
AsuHPI	GGTGA	3 cut(s)	55, 2425, 2446
AsuII	TTCGAA	1 cut(s)	2457
AvaI	CYCGRG	1 cut(s)	2283
AvaII	GGWCC	7 cut(s)	139, 752, 948, 1038, 1439, 2105, 2279
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	1679
BbsI	GAAGAC	1 cut(s)	2216
BbvCI	CCTCAGC	1 cut(s)	2033
BbvI	GCAGC	4 cut(s)	881, 1368, 2300, 2488
BceAI	ACGGC	1 cut(s)	1429
BciT130I	CCWGG	2 cut(s)	596, 1639
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	2411
BcoDI	GTCTC	6 cut(s)	244, 484, 726, 1594, 1755, 2262
BfaI	CTAG	5 cut(s)	531, 614, 942, 1944, 2175
BfmI	CTRYAG	3 cut(s)	791, 867, 1245
BfoI	RGCGCY	1 cut(s)	2478
BfuAI	ACCTGC	1 cut(s)	959
BisI	GCNGC	7 cut(s)	174, 177, 196, 870, 1382, 2289, 2502
BlsI	GCNGC	7 cut(s)	175, 178, 197, 871, 1383, 2290, 2503
BmcAI	AGTACT	2 cut(s)	189, 2465
Bme1390I	CCNGG	3 cut(s)	596, 1639, 2411
Bme18I	GGWCC	7 cut(s)	139, 752, 948, 1038, 1439, 2105, 2279
BmeT110I	CYCGRG	1 cut(s)	2283
BmiI	GGNNCC	4 cut(s)	6, 312, 1681, 2281
BmrFI	CCNGG	3 cut(s)	596, 1639, 2411
BmsI	GCATC	4 cut(s)	958, 1414, 1438, 1442
BoxI	GACNNNNGTC	1 cut(s)	836
BpiI	GAAGAC	1 cut(s)	2216
BplI	GAGNNNNNCTC	6 cut(s)	137, 169, 139, 171, 1091, 1123
BpmI	CTGGAG	7 cut(s)	202, 360, 578, 819, 1225, 1660, 2374
Bpu10I	CCTNAGC	1 cut(s)	2033
Bpu14I	TTCGAA	1 cut(s)	2457
BpuEI	CTTGAG	1 cut(s)	1737
BpuMI	CCSGG	1 cut(s)	2411
BsaI	GGTCTC	2 cut(s)	484, 726
BsaJI	CCNNGG	4 cut(s)	500, 595, 1473, 2108
BsaWI	WCCGGW	3 cut(s)	329, 1717, 2423
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 446, 1479, 1754
Bse3DI	GCAATG	2 cut(s)	257, 1341
BseAI	TCCGGA	2 cut(s)	329, 1717
BseBI	CCWGG	2 cut(s)	596, 1639
BseDI	CCNNGG	4 cut(s)	500, 595, 1473, 2108
BseGI	GGATG	9 cut(s)	286, 691, 749, 1184, 1260, 1429, 1705, 1730, 2500
BseLI	CCNNNNNNNGG	4 cut(s)	148, 446, 1479, 1754
BseMI	GCAATG	2 cut(s)	257, 1341
BseMII	CTCAG	3 cut(s)	1530, 1917, 2047
BseRI	GAGGAG	2 cut(s)	70, 2371
BseXI	GCAGC	4 cut(s)	881, 1368, 2300, 2488
BsgI	GTGCAG	4 cut(s)	937, 1197, 1367, 1635
Bsh1236I	CGCG	3 cut(s)	144, 183, 2232
BshFI	GGCC	5 cut(s)	152, 590, 702, 1210, 2031
BshNI	GGYRCC	1 cut(s)	1679
BsiHKCI	CYCGRG	1 cut(s)	2283
BsiSI	CCGG	4 cut(s)	330, 1718, 2411, 2424
BslFI	GGGAC	4 cut(s)	422, 566, 1149, 2265
BslI	CCNNNNNNNGG	4 cut(s)	148, 446, 1479, 1754
BsmAI	GTCTC	6 cut(s)	244, 484, 726, 1594, 1755, 2262
BsmBI	CGTCTC	3 cut(s)	244, 1594, 1755
BsmFI	GGGAC	4 cut(s)	422, 566, 1149, 2265
BsmI	GAATGC	3 cut(s)	523, 707, 2176
BsnI	GGCC	5 cut(s)	152, 590, 702, 1210, 2031
Bso31I	GGTCTC	2 cut(s)	484, 726
BsoBI	CYCGRG	1 cut(s)	2283
Bsp119I	TTCGAA	1 cut(s)	2457
Bsp13I	TCCGGA	2 cut(s)	329, 1717
Bsp19I	CCATGG	2 cut(s)	1473, 2108
Bsp68I	TCGCGA	1 cut(s)	2232
BspACI	CCGC	9 cut(s)	21, 142, 174, 177, 183, 193, 196, 761, 2432
BspANI	GGCC	5 cut(s)	152, 590, 702, 1210, 2031
BspCNI	CTCAG	3 cut(s)	1531, 1916, 2046
BspEI	TCCGGA	2 cut(s)	329, 1717
BspFNI	CGCG	3 cut(s)	144, 183, 2232
BspLI	GGNNCC	4 cut(s)	6, 312, 1681, 2281
BspMAI	CTGCAG	2 cut(s)	871, 1249
BspMI	ACCTGC	1 cut(s)	959
BspPI	GGATC	7 cut(s)	305, 318, 971, 1088, 1190, 1721, 2375
BspQI	GCTCTTC	1 cut(s)	56
BspT104I	TTCGAA	1 cut(s)	2457
BspT107I	GGYRCC	1 cut(s)	1679
BspTNI	GGTCTC	2 cut(s)	484, 726
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	2 cut(s)	257, 1341
BssECI	CCNNGG	4 cut(s)	500, 595, 1473, 2108
BssT1I	CCWWGG	3 cut(s)	500, 1473, 2108
Bst2UI	CCWGG	2 cut(s)	596, 1639
Bst4CI	ACNGT	6 cut(s)	909, 1058, 1160, 1374, 1749, 2160
Bst6I	CTCTTC	2 cut(s)	56, 2205
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstBI	TTCGAA	1 cut(s)	2457
BstC8I	GCNNGC	3 cut(s)	181, 1212, 2083
BstDEI	CTNAG	6 cut(s)	243, 1539, 1903, 1959, 2033, 2077
BstDSI	CCRYGG	2 cut(s)	1473, 2108
BstF5I	GGATG	9 cut(s)	286, 691, 749, 1184, 1260, 1429, 1705, 1730, 2500
BstFNI	CGCG	3 cut(s)	144, 183, 2232
BstH2I	RGCGCY	1 cut(s)	2478
BstHHI	GCGC	3 cut(s)	424, 2123, 2477
BstMAI	GTCTC	6 cut(s)	244, 484, 726, 1594, 1755, 2262
BstMWI	GCNNNNNNNGC	3 cut(s)	713, 769, 1964
BstNI	CCWGG	2 cut(s)	596, 1639
BstNSI	RCATGY	3 cut(s)	1637, 1868, 2085
BstPAI	GACNNNNGTC	1 cut(s)	836
BstSCI	CCNGG	3 cut(s)	594, 1637, 2409
BstSFI	CTRYAG	3 cut(s)	791, 867, 1245
BstUI	CGCG	3 cut(s)	144, 183, 2232
BstV1I	GCAGC	4 cut(s)	881, 1368, 2300, 2488
BstV2I	GAAGAC	1 cut(s)	2216
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	5 cut(s)	152, 590, 702, 1210, 2031
BtgI	CCRYGG	2 cut(s)	1473, 2108
BtgZI	GCGATG	1 cut(s)	1908
BtsCI	GGATG	9 cut(s)	286, 691, 749, 1184, 1260, 1429, 1705, 1730, 2500
BtsIMutI	CAGTG	5 cut(s)	336, 1379, 1671, 1803, 2489
BtuMI	TCGCGA	1 cut(s)	2232
BveI	ACCTGC	1 cut(s)	959
Cac8I	GCNNGC	3 cut(s)	181, 1212, 2083
CaiI	CAGNNNCTG	1 cut(s)	322
CfoI	GCGC	3 cut(s)	424, 2123, 2477
Csp6I	GTAC	6 cut(s)	188, 1102, 1411, 1843, 1862, 2464
CviQI	GTAC	6 cut(s)	188, 1102, 1411, 1843, 1862, 2464
DdeI	CTNAG	6 cut(s)	243, 1539, 1903, 1959, 2033, 2077
DraI	TTTAAA	1 cut(s)	2007
DraIII	CACNNNGTG	1 cut(s)	69
DrdI	GACNNNNNNGTC	1 cut(s)	1608
DseDI	GACNNNNNNGTC	1 cut(s)	1608
Eam1104I	CTCTTC	2 cut(s)	56, 2205
EarI	CTCTTC	2 cut(s)	56, 2205
EciI	GGCGGA	1 cut(s)	182
Eco130I	CCWWGG	3 cut(s)	500, 1473, 2108
Eco147I	AGGCCT	1 cut(s)	1210
Eco31I	GGTCTC	2 cut(s)	484, 726
Eco32I	GATATC	1 cut(s)	2014
Eco47I	GGWCC	7 cut(s)	139, 752, 948, 1038, 1439, 2105, 2279
Eco47III	AGCGCT	1 cut(s)	2476
Eco57I	CTGAAG	6 cut(s)	119, 1287, 1299, 1823, 1875, 2003
Eco88I	CYCGRG	1 cut(s)	2283
EcoO109I	RGGNCCY	2 cut(s)	150, 701
EcoRII	CCWGG	2 cut(s)	594, 1637
EcoRV	GATATC	1 cut(s)	2014
EcoT14I	CCWWGG	3 cut(s)	500, 1473, 2108
EcoT22I	ATGCAT	1 cut(s)	1870
ErhI	CCWWGG	3 cut(s)	500, 1473, 2108
Esp3I	CGTCTC	3 cut(s)	244, 1594, 1755
FalI	AAGNNNNNCTT	6 cut(s)	1214, 1246, 1900, 1932, 2208, 2240
FaqI	GGGAC	4 cut(s)	422, 566, 1149, 2265
FauI	CCCGC	2 cut(s)	28, 768
FauNDI	CATATG	1 cut(s)	1192
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	2 cut(s)	301, 361
Fnu4HI	GCNGC	7 cut(s)	174, 177, 196, 870, 1382, 2289, 2502
FokI	GGATG	9 cut(s)	273, 698, 756, 1191, 1267, 1436, 1712, 1717, 2507
Fsp4HI	GCNGC	7 cut(s)	174, 177, 196, 870, 1382, 2289, 2502
FspBI	CTAG	5 cut(s)	531, 614, 942, 1944, 2175
FspI	TGCGCA	1 cut(s)	423
GlaI	GCGC	3 cut(s)	423, 2122, 2476
GluI	GCNGC	7 cut(s)	174, 177, 196, 870, 1382, 2289, 2502
GsuI	CTGGAG	7 cut(s)	202, 360, 578, 819, 1225, 1660, 2374
HaeII	RGCGCY	1 cut(s)	2478
HaeIII	GGCC	5 cut(s)	152, 590, 702, 1210, 2031
HapII	CCGG	4 cut(s)	330, 1718, 2411, 2424
HhaI	GCGC	3 cut(s)	424, 2123, 2477
Hin6I	GCGC	3 cut(s)	422, 2121, 2475
HinP1I	GCGC	3 cut(s)	422, 2121, 2475
HincII	GTYRAC	1 cut(s)	1936
HindII	GTYRAC	1 cut(s)	1936
HindIII	AAGCTT	3 cut(s)	1950, 2317, 2372
HinfI	GANTC	7 cut(s)	105, 319, 333, 787, 832, 1817, 2486
HpaII	CCGG	4 cut(s)	330, 1718, 2411, 2424
HphI	GGTGA	3 cut(s)	55, 2425, 2446
Hpy166II	GTNNAC	5 cut(s)	96, 302, 362, 752, 1936
Hpy188I	TCNGA	9 cut(s)	104, 324, 679, 1306, 1540, 1855, 1906, 1983, 2310
Hpy8I	GTNNAC	5 cut(s)	96, 302, 362, 752, 1936
HpyCH4III	ACNGT	6 cut(s)	909, 1058, 1160, 1374, 1749, 2160
HpyCH4IV	ACGT	3 cut(s)	1401, 1603, 1722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	713, 769, 1964
HpyF3I	CTNAG	6 cut(s)	243, 1539, 1903, 1959, 2033, 2077
HpySE526I	ACGT	3 cut(s)	1401, 1603, 1722
HspAI	GCGC	3 cut(s)	422, 2121, 2475
Kpn2I	TCCGGA	2 cut(s)	329, 1717
Ksp22I	TGATCA	1 cut(s)	775
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	10, 247, 1351
Lsp1109I	GCAGC	4 cut(s)	881, 1368, 2300, 2488
LweI	GCATC	4 cut(s)	958, 1414, 1438, 1442
MaeI	CTAG	5 cut(s)	531, 614, 942, 1944, 2175
MaeII	ACGT	3 cut(s)	1401, 1603, 1722
MaeIII	GTNAC	5 cut(s)	334, 523, 935, 1043, 2434
MbiI	CCGCTC	1 cut(s)	179
MfeI	CAATTG	1 cut(s)	1443
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	8 cut(s)	379, 604, 659, 733, 801, 993, 1443, 1666
MlyI	GAGTC	3 cut(s)	114, 342, 826
MmeI	TCCRAC	2 cut(s)	1465, 2094
Mph1103I	ATGCAT	1 cut(s)	1870
MroI	TCCGGA	2 cut(s)	329, 1717
MroXI	GAANNNNTTC	3 cut(s)	650, 1004, 2405
MseI	TTAA	7 cut(s)	279, 663, 930, 1131, 1572, 1584, 2006
MslI	CAYNNNNRTG	2 cut(s)	341, 2007
MspA1I	CMGCKG	2 cut(s)	784, 1975
MspI	CCGG	4 cut(s)	330, 1718, 2411, 2424
MspR9I	CCNGG	3 cut(s)	596, 1639, 2411
MunI	CAATTG	1 cut(s)	1443
Mva1269I	GAATGC	3 cut(s)	523, 707, 2176
MvaI	CCWGG	2 cut(s)	596, 1639
MvnI	CGCG	3 cut(s)	144, 183, 2232
MwoI	GCNNNNNNNGC	3 cut(s)	713, 769, 1964
NciI	CCSGG	1 cut(s)	2411
NcoI	CCATGG	2 cut(s)	1473, 2108
NdeI	CATATG	1 cut(s)	1192
NlaIV	GGNNCC	4 cut(s)	6, 312, 1681, 2281
NmuCI	GTSAC	5 cut(s)	334, 523, 935, 1043, 2434
NruI	TCGCGA	1 cut(s)	2232
NsbI	TGCGCA	1 cut(s)	423
NsiI	ATGCAT	1 cut(s)	1870
NspI	RCATGY	3 cut(s)	1637, 1868, 2085
NspV	TTCGAA	1 cut(s)	2457
OliI	CACNNNNGTG	1 cut(s)	341
PaeI	GCATGC	1 cut(s)	2085
PceI	AGGCCT	1 cut(s)	1210
PciSI	GCTCTTC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	1 cut(s)	1609
PctI	GAATGC	3 cut(s)	523, 707, 2176
PdmI	GAANNNNTTC	3 cut(s)	650, 1004, 2405
PfeI	GAWTC	4 cut(s)	319, 787, 1817, 2486
PkrI	GCNGC	7 cut(s)	175, 178, 197, 871, 1383, 2290, 2503
PleI	GAGTC	3 cut(s)	113, 341, 826
PpsI	GAGTC	3 cut(s)	113, 341, 826
PshAI	GACNNNNGTC	1 cut(s)	836
PshBI	ATTAAT	1 cut(s)	1584
Psp1406I	AACGTT	1 cut(s)	1401
Psp6I	CCWGG	2 cut(s)	594, 1637
PspGI	CCWGG	2 cut(s)	594, 1637
PspN4I	GGNNCC	4 cut(s)	6, 312, 1681, 2281
PstI	CTGCAG	2 cut(s)	871, 1249
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	2 cut(s)	784, 1975
RruI	TCGCGA	1 cut(s)	2232
RsaI	GTAC	6 cut(s)	189, 1103, 1412, 1844, 1863, 2465
RsaNI	GTAC	6 cut(s)	188, 1102, 1411, 1843, 1862, 2464
RseI	CAYNNNNRTG	2 cut(s)	341, 2007
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	7 cut(s)	279, 663, 930, 1131, 1572, 1584, 2006
SatI	GCNGC	7 cut(s)	174, 177, 196, 870, 1382, 2289, 2502
SbfI	CCTGCAGG	1 cut(s)	1249
ScaI	AGTACT	2 cut(s)	189, 2465
SchI	GAGTC	3 cut(s)	114, 342, 826
ScrFI	CCNGG	3 cut(s)	596, 1639, 2411
SdaI	CCTGCAGG	1 cut(s)	1249
SfaNI	GCATC	4 cut(s)	958, 1414, 1438, 1442
SfcI	CTRYAG	3 cut(s)	791, 867, 1245
SfuI	TTCGAA	1 cut(s)	2457
SinI	GGWCC	7 cut(s)	139, 752, 948, 1038, 1439, 2105, 2279
SmiI	ATTTAAAT	1 cut(s)	2007
SmiMI	CAYNNNNRTG	2 cut(s)	341, 2007
SmlI	CTYRAG	1 cut(s)	1752
SmoI	CTYRAG	1 cut(s)	1752
SphI	GCATGC	1 cut(s)	2085
Sse8387I	CCTGCAGG	1 cut(s)	1249
Sse9I	AATT	8 cut(s)	379, 604, 659, 733, 801, 993, 1443, 1666
SseBI	AGGCCT	1 cut(s)	1210
SsiI	CCGC	9 cut(s)	21, 142, 174, 177, 183, 193, 196, 761, 2432
SspI	AATATT	1 cut(s)	1128
SspMI	CTAG	5 cut(s)	531, 614, 942, 1944, 2175
StuI	AGGCCT	1 cut(s)	1210
StyD4I	CCNGG	3 cut(s)	594, 1637, 2409
StyI	CCWWGG	3 cut(s)	500, 1473, 2108
SwaI	ATTTAAAT	1 cut(s)	2007
TaaI	ACNGT	6 cut(s)	909, 1058, 1160, 1374, 1749, 2160
TaiI	ACGT	3 cut(s)	1404, 1606, 1725
TaqI	TCGA	6 cut(s)	119, 225, 724, 807, 1847, 2457
TasI	AATT	8 cut(s)	379, 604, 659, 733, 801, 993, 1443, 1666
TatI	WGTACW	4 cut(s)	187, 1101, 1861, 2463
TauI	GCSGC	3 cut(s)	176, 179, 198
TfiI	GAWTC	4 cut(s)	319, 787, 1817, 2486
Tru1I	TTAA	7 cut(s)	279, 663, 930, 1131, 1572, 1584, 2006
Tru9I	TTAA	7 cut(s)	279, 663, 930, 1131, 1572, 1584, 2006
TscAI	CASTG	5 cut(s)	343, 1379, 1678, 1803, 2496
TseFI	GTSAC	5 cut(s)	334, 523, 935, 1043, 2434
TseI	GCWGC	4 cut(s)	869, 1381, 2288, 2501
Tsp45I	GTSAC	5 cut(s)	334, 523, 935, 1043, 2434
TspDTI	ATGAA	7 cut(s)	834, 997, 1235, 1785, 1809, 1911, 2511
TspRI	CASTG	5 cut(s)	343, 1379, 1678, 1803, 2496
VpaK11BI	GGWCC	7 cut(s)	139, 752, 948, 1038, 1439, 2105, 2279
VspI	ATTAAT	1 cut(s)	1584
XapI	RAATTY	3 cut(s)	659, 733, 801
XceI	RCATGY	3 cut(s)	1637, 1868, 2085
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1449
XmiI	GTMKAC	2 cut(s)	301, 361
XmnI	GAANNNNTTC	3 cut(s)	650, 1004, 2405
XspI	CTAG	5 cut(s)	531, 614, 942, 1944, 2175
ZrmI	AGTACT	2 cut(s)	189, 2465
Zsp2I	ATGCAT	1 cut(s)	1870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.