Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008259

Physical Location & Seq

Genomic Coordinates Reverse (-)

23465130 .. 23466049

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1098700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTCCATAACGGAATCAAATATGGTAACATGCAGCTTATTTTGGAGCCGTACGACGTGCTGAAGAACGTCGGAAGGCTGATGAACAAGGAATTGAGCAAGATTTTCTTGGAGTGGAATAGGGGAGAGCTGGAGAGCTTCCTGACGGGGATGAAGGGGACCAGGAAATGGACGGTCCAGCAGGTGGCGGAGCTGTCAGTAGCTGCGCCCACCATTGCTGCTTCCTTGGACTACAGGTACTTTAGTGGGTTGAAGGAGGAGAGAGAGAAGGCCGAGGAGGTTCTGAATGTGGAGAAGGGTTGGAATTTGAATTTGGGGGAATTGGCTCAGATTTGGAAAGGCAGGTGCATTATCAGAGCGGTGTTCTTGGATCAAATTAAGAATGCTTATCAGATGAATCAGAGCTTGCCCAACTTGATTGTTAATCCTGATTTTGCTAAAAAAATGATGCAGAGGCAGGCTGCGTGGAAGAGGGTTGTCAGGTTGGCAGTGGCCCCGGGGATTAGCACTCCCGGAATGTGTGCCAGTTTGTCATATTTTGACACTTATCGACAGGGTAGGCTTCCAGCCAACCTTGTTCAGGCGCAGAAGGACTTGTTTGGGGCTCATACCTATGAGAGGGTGGATCGCCCCGGGGCCTTTCACATAGAGTGGACGAAGCTTGCTCAGAAGAGTGGTTCGGGTGTTGGTGCACTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

234

Amino Acids

26.43

Weight (kDa)

9.52

Isoelectric Point (pI)

17.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
6PGD	PF00393	1 - 49	9e-16	6-phosphogluconate dehydrogenase, C-terminal domain
6PGD	PF00393	50 - 96	4.3e-09	6-phosphogluconate dehydrogenase, C-terminal domain
6PGD	PF00393	98 - 218	1.8e-46	6-phosphogluconate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64190 AT5G41670 AT5G41670 AT5G41670 AT5G41670
fragaria_vesca	FvH4_4g04820
malus_domestica	MD06G1098700.v1.1 MD14G1117900.v1.1
prunus_persica	Prupe.5G112300_v2.0.a1 Prupe.5G112300_v2.0.a1
pyrus_communis	pycom06g09400
rosa_chinensis	RchiOBHm_Chr7g0195821
rosa_laevigata	RLG00000004086
rosa_multiflora	Rmu_sc0002445.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260070 Rroxscaffold_4G00304940
rosa_rugosa	Rorug07G0026400
rosa_samantha	Rh1DG221600 Rh7AG154400 Rh7BG156200 Rh7CG159900 Rh7DG155500
rosa_wichuraiana	Rw7G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	172, 333
Acc36I	ACCTGC	2 cut(s)	172, 333
AccB7I	CCANNNNNTGG	2 cut(s)	168, 184
AccBSI	CCGCTC	1 cut(s)	359
AciI	CCGC	2 cut(s)	188, 359
AclWI	GGATC	2 cut(s)	378, 633
AcsI	RAATTY	2 cut(s)	304, 310
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	53, 239
AfiI	CCNNNNNNNGG	4 cut(s)	168, 184, 580, 618
AgsI	TTSAA	2 cut(s)	253, 310
AjiI	CACGTC	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	7 cut(s)	37, 130, 138, 193, 203, 405, 661
AluI	AGCT	7 cut(s)	37, 130, 138, 193, 203, 405, 661
Alw21I	GWGCWC	1 cut(s)	694
Alw44I	GTGCAC	1 cut(s)	690
AlwI	GGATC	2 cut(s)	378, 633
AlwNI	CAGNNNCTG	1 cut(s)	203
Ama87I	CYCGRG	2 cut(s)	496, 632
AoxI	GGCC	3 cut(s)	270, 492, 636
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	4 cut(s)	34, 203, 218, 461
ApoI	RAATTY	2 cut(s)	304, 310
AspLEI	GCGC	2 cut(s)	208, 586
AspS9I	GGNCC	5 cut(s)	4, 159, 175, 493, 636
AsuC2I	CCSGG	5 cut(s)	497, 498, 513, 633, 634
AvaI	CYCGRG	2 cut(s)	496, 632
AvaII	GGWCC	3 cut(s)	4, 159, 175
BaeGI	GKGCMC	1 cut(s)	694
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BanII	GRGCYC	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	4 cut(s)	46, 190, 205, 448
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	163
BcnI	CCSGG	5 cut(s)	497, 498, 513, 633, 634
BfmI	CTRYAG	1 cut(s)	232
BfuAI	ACCTGC	2 cut(s)	172, 333
BisI	GCNGC	4 cut(s)	35, 204, 219, 462
BlsI	GCNGC	4 cut(s)	36, 205, 220, 463
Bme1390I	CCNGG	6 cut(s)	163, 497, 498, 513, 633, 634
Bme18I	GGWCC	3 cut(s)	4, 159, 175
BmeT110I	CYCGRG	2 cut(s)	496, 632
BmgBI	CACGTC	1 cut(s)	58
BmgT120I	GGNCC	5 cut(s)	4, 159, 175, 493, 636
BmiI	GGNNCC	4 cut(s)	48, 160, 495, 637
BmrFI	CCNGG	6 cut(s)	163, 497, 498, 513, 633, 634
BmsI	GCATC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	5 cut(s)	497, 498, 513, 633, 634
BsaJI	CCNNGG	8 cut(s)	225, 273, 495, 496, 497, 631, 632, 633
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 184, 580, 618
Bse1I	ACTGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	8 cut(s)	225, 273, 495, 496, 497, 631, 632, 633
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	4 cut(s)	168, 184, 580, 618
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	341, 680
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	2 cut(s)	272, 290
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	4 cut(s)	46, 190, 205, 448
BshFI	GGCC	3 cut(s)	272, 494, 638
BsiHKAI	GWGCWC	1 cut(s)	694
BsiHKCI	CYCGRG	2 cut(s)	496, 632
BsiSI	CCGG	3 cut(s)	497, 513, 633
BsiWI	CGTACG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	4 cut(s)	168, 184, 580, 618
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	272, 494, 638
BsoBI	CYCGRG	2 cut(s)	496, 632
Bsp1286I	GDGCHC	2 cut(s)	607, 694
Bsp143I	GATC	2 cut(s)	370, 625
BspACI	CCGC	2 cut(s)	188, 359
BspANI	GGCC	3 cut(s)	272, 494, 638
BspCNI	CTCAG	2 cut(s)	340, 679
BspLI	GGNNCC	4 cut(s)	48, 160, 495, 637
BspMI	ACCTGC	2 cut(s)	172, 333
BspPI	GGATC	2 cut(s)	378, 633
BsrBI	CCGCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	8 cut(s)	225, 273, 495, 496, 497, 631, 632, 633
BssMI	GATC	2 cut(s)	370, 625
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	464, 665
BstC8I	GCNNGC	3 cut(s)	407, 459, 663
BstDEI	CTNAG	2 cut(s)	327, 666
BstENI	CCTNNNNNAGG	2 cut(s)	578, 616
BstF5I	GGATG	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	208, 586
BstKTI	GATC	2 cut(s)	373, 628
BstMBI	GATC	2 cut(s)	370, 625
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	6 cut(s)	161, 495, 496, 511, 631, 632
BstSFI	CTRYAG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	4 cut(s)	46, 190, 205, 448
BsuRI	GGCC	3 cut(s)	272, 494, 638
BtrI	CACGTC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	2 cut(s)	172, 333
Cac8I	GCNNGC	3 cut(s)	407, 459, 663
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	2 cut(s)	208, 586
Cfr13I	GGNCC	5 cut(s)	4, 159, 175, 493, 636
Cfr9I	CCCGGG	2 cut(s)	496, 632
Csp6I	GTAC	2 cut(s)	52, 238
CviAII	CATG	1 cut(s)	31
CviQI	GTAC	2 cut(s)	52, 238
DdeI	CTNAG	2 cut(s)	327, 666
DpnI	GATC	2 cut(s)	372, 627
DpnII	GATC	2 cut(s)	370, 625
Eam1104I	CTCTTC	2 cut(s)	464, 665
EarI	CTCTTC	2 cut(s)	464, 665
EciI	GGCGGA	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	3 cut(s)	4, 159, 175
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	2 cut(s)	496, 632
EcoNI	CCTNNNNNAGG	2 cut(s)	578, 616
EcoO109I	RGGNCCY	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	34
FaiI	YATR	7 cut(s)	9, 24, 32, 535, 609, 615, 647
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	35, 204, 219, 462
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	4 cut(s)	35, 204, 219, 462
GlaI	GCGC	2 cut(s)	207, 585
GluI	GCNGC	4 cut(s)	35, 204, 219, 462
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	272, 494, 638
HapII	CCGG	3 cut(s)	497, 513, 633
HhaI	GCGC	2 cut(s)	208, 586
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	2 cut(s)	206, 584
HinP1I	GCGC	2 cut(s)	206, 584
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	2 cut(s)	15, 397
HpaII	CCGG	3 cut(s)	497, 513, 633
Hpy166II	GTNNAC	2 cut(s)	654, 692
Hpy188I	TCNGA	7 cut(s)	74, 285, 330, 356, 393, 402, 669
Hpy188III	TCNNGA	2 cut(s)	142, 428
Hpy8I	GTNNAC	2 cut(s)	654, 692
Hpy99I	CGWCG	2 cut(s)	59, 74
HpyAV	CCTTC	6 cut(s)	69, 148, 247, 262, 289, 583
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	57, 69
HpyCH4V	TGCA	4 cut(s)	34, 348, 451, 692
HpyF3I	CTNAG	2 cut(s)	327, 666
HpySE526I	ACGT	2 cut(s)	57, 69
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	2 cut(s)	206, 584
Kzo9I	GATC	2 cut(s)	370, 625
LmnI	GCTCC	2 cut(s)	46, 190
Lsp1109I	GCAGC	4 cut(s)	46, 190, 205, 448
LweI	GCATC	1 cut(s)	438
MaeII	ACGT	2 cut(s)	57, 69
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	2 cut(s)	372, 627
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	2 cut(s)	370, 625
MboII	GAAGA	3 cut(s)	76, 481, 682
MhlI	GDGCHC	2 cut(s)	607, 694
MluCI	AATT	5 cut(s)	92, 304, 310, 320, 375
MmeI	TCCRAC	2 cut(s)	52, 281
MnlI	CCTC	6 cut(s)	250, 268, 271, 447, 465, 612
MseI	TTAA	3 cut(s)	378, 423, 700
MslI	CAYNNNNRTG	1 cut(s)	612
MspI	CCGG	3 cut(s)	497, 513, 633
MspR9I	CCNGG	6 cut(s)	163, 497, 498, 513, 633, 634
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	163
NciI	CCSGG	5 cut(s)	497, 498, 513, 633, 634
NdeII	GATC	2 cut(s)	370, 625
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	4 cut(s)	48, 160, 495, 637
NmeAIII	GCCGAG	1 cut(s)	298
NspI	RCATGY	1 cut(s)	34
PaqCI	CACCTGC	2 cut(s)	172, 333
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	15, 397
Pfl23II	CGTACG	1 cut(s)	51
PflMI	CCANNNNNTGG	2 cut(s)	168, 184
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	4 cut(s)	36, 205, 220, 463
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	4 cut(s)	48, 160, 495, 637
PspPI	GGNCC	5 cut(s)	4, 159, 175, 493, 636
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	53, 239
RsaNI	GTAC	2 cut(s)	52, 238
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	3 cut(s)	378, 423, 700
SatI	GCNGC	4 cut(s)	35, 204, 219, 462
Sau3AI	GATC	2 cut(s)	370, 625
Sau96I	GGNCC	5 cut(s)	4, 159, 175, 493, 636
ScrFI	CCNGG	6 cut(s)	163, 497, 498, 513, 633, 634
SduI	GDGCHC	2 cut(s)	607, 694
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	1 cut(s)	232
SinI	GGWCC	3 cut(s)	4, 159, 175
SmaI	CCCGGG	2 cut(s)	498, 634
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	5 cut(s)	92, 304, 310, 320, 375
SsiI	CCGC	2 cut(s)	188, 359
StyD4I	CCNGG	6 cut(s)	161, 495, 496, 511, 631, 632
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	60, 72
TaqI	TCGA	1 cut(s)	550
TasI	AATT	5 cut(s)	92, 304, 310, 320, 375
TfiI	GAWTC	2 cut(s)	15, 397
Tru1I	TTAA	3 cut(s)	378, 423, 700
Tru9I	TTAA	3 cut(s)	378, 423, 700
TscAI	CASTG	1 cut(s)	495
TseI	GCWGC	4 cut(s)	34, 203, 218, 461
TspDTI	ATGAA	3 cut(s)	98, 167, 410
TspGWI	ACGGA	1 cut(s)	27
TspMI	CCCGGG	2 cut(s)	496, 632
TspRI	CASTG	1 cut(s)	495
Van91I	CCANNNNNTGG	2 cut(s)	168, 184
VneI	GTGCAC	1 cut(s)	690
VpaK11BI	GGWCC	3 cut(s)	4, 159, 175
XagI	CCTNNNNNAGG	2 cut(s)	578, 616
XapI	RAATTY	2 cut(s)	304, 310
XceI	RCATGY	1 cut(s)	34
XmaI	CCCGGG	2 cut(s)	496, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.