Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008259

Physical Location & Seq

Genomic Coordinates Reverse (-)

19271354 .. 19272264

Gene Structure 911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1117900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCAGCTGATTTCGGAGGCGTACGACGTTCTGAAGAACGTCGGAGGGCTGACGAATCAGGAATTGGGGGAGATTTTTTCGGAGTGGAACAGGGGAGAGCTGGAGAGCTTCCTGATTGAGATTACGGCCGACATTTTTAGGGTTAAGGATAATTTAGCGGATGGGTTTTTGGTGGATAAGCTGCTCGACAAGACGGGGATGAAGGGGACCGGGAAATGGACGGTGCAGCAGGCGGCGGAGCTGTCAGTAGCTGCGCCCACCATTGCTGCTTCCTTGGACTGCAGGTACTTAAGTGGGTTGAAGGAGGAGAGAGAGAAGGCCGAGGAGGCTCTGAAGCAGGCAGGGTTTAAAGAGGAGATTGGCAGCGTGACGAGCGGCATTGATAAGAAGCGGTTGATTGATGATGTGAGGCAGGCATTGTACGCTTCGAAGATATGCAGTTATGCTCAAGGGATGAACTTGTTGAGGGCCAAGAGTGTGGAGAAGGGTTGGAATTTGAATTTGGGGGAGTTGGCTCGTATTTGGAAAGGCGGTTGCATTATCAGAGCGGTGTTCTTGGATCGGATCAAGAATGCTTACCAGAGGAATCAGAGTTTGCCCAACTTGATTGTTGATCCCGATTTTGCTAAAGAAATGGTGCAGAGGCAGGCTGCGTGGAGGAGGGTTGTCGGGGTGGCAGTGGCAGCCGGGATTAGCACTCCCGGAATGTGTGCCAGTTTGTCATATTTTGACACTTATCGGCGGGGTAGGCTTCCGGCCAACCTTGTTCAGGCTCAGAGGGACTTGTTTGGGGCTCATACCTATGAGAGAGTGGATCGCCCCGGGGCCTTTCACACCGAGTGGACGAAGCTCGCTCAGAAGAGCGGTTCTGGCGTCGGTGCACTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

297

Amino Acids

32.77

Weight (kDa)

8.76

Isoelectric Point (pI)

19.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
6PGD	PF00393	1 - 281	2.4e-112	6-phosphogluconate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64190 AT5G41670 AT5G41670 AT5G41670 AT5G41670
fragaria_vesca	FvH4_4g04820
malus_domestica	MD06G1098700.v1.1 MD14G1117900.v1.1
prunus_persica	Prupe.5G112300_v2.0.a1 Prupe.5G112300_v2.0.a1
pyrus_communis	pycom06g09400
rosa_chinensis	RchiOBHm_Chr7g0195821
rosa_laevigata	RLG00000004086
rosa_multiflora	Rmu_sc0002445.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260070 Rroxscaffold_4G00304940
rosa_rugosa	Rorug07G0026400
rosa_samantha	Rh1DG221600 Rh7AG154400 Rh7BG156200 Rh7CG159900 Rh7DG155500
rosa_wichuraiana	Rw7G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	273
AccBSI	CCGCTC	3 cut(s)	375, 548, 864
AciI	CCGC	9 cut(s)	158, 233, 236, 375, 391, 531, 548, 742, 864
AclWI	GGATC	4 cut(s)	567, 572, 608, 822
AcoI	YGGCCR	2 cut(s)	126, 756
AcsI	RAATTY	2 cut(s)	493, 499
AcuI	CTGAAG	2 cut(s)	53, 353
AcyI	GRCGYC	1 cut(s)	873
AdeI	CACNNNGTG	1 cut(s)	840
AfaI	GTAC	3 cut(s)	23, 287, 422
AfiI	CCNNNNNNNGG	2 cut(s)	216, 769
AflII	CTTAAG	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	301, 499
AjuI	GAANNNNNNNTTGG	4 cut(s)	47, 79, 485, 517
AluBI	AGCT	7 cut(s)	7, 100, 108, 181, 241, 251, 850
AluI	AGCT	7 cut(s)	7, 100, 108, 181, 241, 251, 850
Alw21I	GWGCWC	1 cut(s)	883
Alw44I	GTGCAC	1 cut(s)	879
AlwI	GGATC	4 cut(s)	567, 572, 608, 822
AlwNI	CAGNNNCTG	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	821
AoxI	GGCC	5 cut(s)	126, 318, 468, 756, 825
ApaLI	GTGCAC	1 cut(s)	879
ApeKI	GCWGC	8 cut(s)	4, 181, 226, 251, 266, 363, 650, 683
ApoI	RAATTY	2 cut(s)	493, 499
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	207, 468, 825
AsuC2I	CCSGG	5 cut(s)	211, 688, 702, 822, 823
AsuII	TTCGAA	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	883
BaeI	ACNNNNGTAYC	2 cut(s)	277, 310
BanII	GRGCYC	1 cut(s)	796
Bbv12I	GWGCWC	1 cut(s)	883
BbvI	GCAGC	8 cut(s)	16, 168, 238, 238, 253, 375, 637, 695
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	141
BcnI	CCSGG	5 cut(s)	211, 688, 702, 822, 823
BfmI	CTRYAG	1 cut(s)	280
BfrI	CTTAAG	1 cut(s)	289
BfuAI	ACCTGC	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	326
Bme1390I	CCNGG	5 cut(s)	211, 688, 702, 822, 823
Bme18I	GGWCC	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	3 cut(s)	207, 468, 825
BmiI	GGNNCC	2 cut(s)	208, 826
BmrFI	CCNGG	5 cut(s)	211, 688, 702, 822, 823
BpmI	CTGGAG	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	432
BpuMI	CCSGG	5 cut(s)	211, 688, 702, 822, 823
BsaHI	GRCGYC	1 cut(s)	873
BsaJI	CCNNGG	5 cut(s)	273, 321, 820, 821, 822
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 769
Bse1I	ACTGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	5 cut(s)	273, 321, 820, 821, 822
BseGI	GGATG	3 cut(s)	166, 204, 459
BseLI	CCNNNNNNNGG	2 cut(s)	216, 769
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	788, 869
BseNI	ACTGG	1 cut(s)	714
BseRI	GAGGAG	4 cut(s)	320, 338, 368, 673
BseSI	GKGCMC	1 cut(s)	883
BseX3I	CGGCCG	1 cut(s)	126
BseXI	GCAGC	8 cut(s)	16, 168, 238, 238, 253, 375, 637, 695
BsgI	GTGCAG	2 cut(s)	245, 659
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	5 cut(s)	128, 320, 470, 758, 827
BsiEI	CGRYCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	883
BsiHKCI	CYCGRG	1 cut(s)	821
BsiSI	CCGG	5 cut(s)	210, 687, 702, 755, 822
BsiWI	CGTACG	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	220, 794
BslI	CCNNNNNNNGG	2 cut(s)	216, 769
BsmFI	GGGAC	2 cut(s)	220, 794
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	5 cut(s)	128, 320, 470, 758, 827
BsoBI	CYCGRG	1 cut(s)	821
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	796, 883
Bsp143I	GATC	4 cut(s)	559, 564, 613, 814
BspACI	CCGC	9 cut(s)	158, 233, 236, 375, 391, 531, 548, 742, 864
BspANI	GGCC	5 cut(s)	128, 320, 470, 758, 827
BspCNI	CTCAG	2 cut(s)	787, 868
BspLI	GGNNCC	2 cut(s)	208, 826
BspMAI	CTGCAG	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	273
BspPI	GGATC	4 cut(s)	567, 572, 608, 822
BspQI	GCTCTTC	1 cut(s)	854
BspT104I	TTCGAA	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	289
BsrBI	CCGCTC	3 cut(s)	375, 548, 864
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	714
BssECI	CCNNGG	5 cut(s)	273, 321, 820, 821, 822
BssMI	GATC	4 cut(s)	559, 564, 613, 814
BssNI	GRCGYC	1 cut(s)	873
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	854
BstACI	GRCGYC	1 cut(s)	873
BstAFI	CTTAAG	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	5 cut(s)	231, 339, 414, 648, 852
BstDEI	CTNAG	2 cut(s)	774, 855
BstENI	CCTNNNNNAGG	1 cut(s)	767
BstF5I	GGATG	3 cut(s)	166, 204, 459
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	4 cut(s)	562, 567, 616, 817
BstMBI	GATC	4 cut(s)	559, 564, 613, 814
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	6 cut(s)	326, 372, 422, 683, 748, 870
BstSCI	CCNGG	5 cut(s)	209, 686, 700, 820, 821
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	883
BstV1I	GCAGC	8 cut(s)	16, 168, 238, 238, 253, 375, 637, 695
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstZI	CGGCCG	1 cut(s)	126
BsuRI	GGCC	5 cut(s)	128, 320, 470, 758, 827
BtsCI	GGATG	3 cut(s)	166, 204, 459
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	1 cut(s)	684
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	5 cut(s)	231, 339, 414, 648, 852
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	3 cut(s)	207, 468, 825
Cfr9I	CCCGGG	1 cut(s)	821
CseI	GACGC	1 cut(s)	862
Csp6I	GTAC	3 cut(s)	22, 286, 421
CviQI	GTAC	3 cut(s)	22, 286, 421
DdeI	CTNAG	2 cut(s)	774, 855
DpnI	GATC	4 cut(s)	561, 566, 615, 816
DpnII	GATC	4 cut(s)	559, 564, 613, 814
DraI	TTTAAA	1 cut(s)	349
DraIII	CACNNNGTG	1 cut(s)	840
EaeI	YGGCCR	2 cut(s)	126, 756
EagI	CGGCCG	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
EciI	GGCGGA	1 cut(s)	251
EclXI	CGGCCG	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	207
Eco52I	CGGCCG	1 cut(s)	126
Eco57I	CTGAAG	2 cut(s)	53, 353
Eco88I	CYCGRG	1 cut(s)	821
EcoNI	CCTNNNNNAGG	1 cut(s)	767
EcoO109I	RGGNCCY	1 cut(s)	825
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	796
ErhI	CCWWGG	1 cut(s)	273
FaiI	YATR	5 cut(s)	436, 444, 724, 798, 804
FaqI	GGGAC	2 cut(s)	220, 794
FauI	CCCGC	1 cut(s)	735
FokI	GGATG	3 cut(s)	173, 211, 466
FriOI	GRGCYC	1 cut(s)	796
GlaI	GCGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	5 cut(s)	128, 320, 470, 758, 827
HapII	CCGG	5 cut(s)	210, 687, 702, 755, 822
HgaI	GACGC	1 cut(s)	862
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	873
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	2 cut(s)	55, 586
HpaII	CCGG	5 cut(s)	210, 687, 702, 755, 822
Hpy166II	GTNNAC	2 cut(s)	843, 881
Hpy188III	TCNNGA	4 cut(s)	59, 112, 568, 617
Hpy8I	GTNNAC	2 cut(s)	843, 881
Hpy99I	CGWCG	3 cut(s)	29, 44, 878
HpyAV	CCTTC	4 cut(s)	196, 295, 310, 478
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	2 cut(s)	27, 39
HpyCH4V	TGCA	7 cut(s)	4, 226, 282, 438, 537, 640, 881
HpyF10VI	GCNNNNNNNGC	6 cut(s)	326, 372, 422, 683, 748, 870
HpyF3I	CTNAG	2 cut(s)	774, 855
HpySE526I	ACGT	2 cut(s)	27, 39
Hsp92I	GRCGYC	1 cut(s)	873
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	4 cut(s)	559, 564, 613, 814
LguI	GCTCTTC	1 cut(s)	854
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	8 cut(s)	16, 168, 238, 238, 253, 375, 637, 695
MaeII	ACGT	2 cut(s)	27, 39
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	4 cut(s)	561, 566, 615, 816
MbiI	CCGCTC	3 cut(s)	375, 548, 864
MboI	GATC	4 cut(s)	559, 564, 613, 814
MboII	GAAGA	3 cut(s)	46, 442, 871
MfeI	CAATTG	1 cut(s)	886
MhlI	GDGCHC	2 cut(s)	796, 883
MluCI	AATT	5 cut(s)	62, 151, 493, 499, 886
MmeI	TCCRAC	2 cut(s)	22, 470
MseI	TTAA	3 cut(s)	144, 290, 348
MslI	CAYNNNNRTG	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	7
MspCI	CTTAAG	1 cut(s)	289
MspI	CCGG	5 cut(s)	210, 687, 702, 755, 822
MspR9I	CCNGG	5 cut(s)	211, 688, 702, 822, 823
MunI	CAATTG	1 cut(s)	886
Mva1269I	GAATGC	1 cut(s)	577
MwoI	GCNNNNNNNGC	6 cut(s)	326, 372, 422, 683, 748, 870
NciI	CCSGG	5 cut(s)	211, 688, 702, 822, 823
NdeII	GATC	4 cut(s)	559, 564, 613, 814
NlaIV	GGNNCC	2 cut(s)	208, 826
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	854
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	55, 586
Pfl23II	CGTACG	1 cut(s)	21
PfoI	TCCNGGA	1 cut(s)	700
PspLI	CGTACG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	208, 826
PspPI	GGNCC	3 cut(s)	207, 468, 825
PstI	CTGCAG	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	7
RsaI	GTAC	3 cut(s)	23, 287, 422
RsaNI	GTAC	3 cut(s)	22, 286, 421
RseI	CAYNNNNRTG	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	854
SaqAI	TTAA	3 cut(s)	144, 290, 348
Sau3AI	GATC	4 cut(s)	559, 564, 613, 814
Sau96I	GGNCC	3 cut(s)	207, 468, 825
ScrFI	CCNGG	5 cut(s)	211, 688, 702, 822, 823
SduI	GDGCHC	2 cut(s)	796, 883
SfcI	CTRYAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	1 cut(s)	207
SmaI	CCCGGG	1 cut(s)	823
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	2 cut(s)	289, 447
SmoI	CTYRAG	2 cut(s)	289, 447
Sse9I	AATT	5 cut(s)	62, 151, 493, 499, 886
SsiI	CCGC	9 cut(s)	158, 233, 236, 375, 391, 531, 548, 742, 864
StyD4I	CCNGG	5 cut(s)	209, 686, 700, 820, 821
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	2 cut(s)	30, 42
TaqI	TCGA	2 cut(s)	186, 428
TasI	AATT	5 cut(s)	62, 151, 493, 499, 886
TauI	GCSGC	2 cut(s)	236, 378
TfiI	GAWTC	2 cut(s)	55, 586
Tru1I	TTAA	3 cut(s)	144, 290, 348
Tru9I	TTAA	3 cut(s)	144, 290, 348
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	8 cut(s)	4, 181, 226, 251, 266, 363, 650, 683
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	215, 470
TspMI	CCCGGG	1 cut(s)	821
TspRI	CASTG	1 cut(s)	684
Vha464I	CTTAAG	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	879
VpaK11BI	GGWCC	1 cut(s)	207
XagI	CCTNNNNNAGG	1 cut(s)	767
XapI	RAATTY	2 cut(s)	493, 499
XmaI	CCCGGG	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.