Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008259

Physical Location & Seq

Genomic Coordinates Forward (+)

43136560 .. 43137102

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG221600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCAGCTAGCCCACTCGACTCAACCATCTCCGGCGTCGTTGACGCCGTCGGCCCCGCCATCTCCAAGTTTAAAGTCAGCGATGTTGTTTGCTCCGTCGCCGCCCTCGGGTCTTTTGCTCAATTCATCGTCGCCGATCAGTCCAAGTCTCATGCCCGGCAGGTCCCACCAGGCATACTCCAACGTTCAGGATATTCTCCACAAGGTCGCCGCCCAAGTGGAGAACGGGCCTTGCATGGCGAAGGCGGGTCGGGTAACTTCATCAAGATGTCCACAACGGGCGATATGCAGCTGATTTCGGAGGCCTACGACGTGTTGAAGAACATCGGCGGGCTTTCGAATTCGGAGTTGGCCGAAATCTTTGACGAGTGGAACAAATGGGAGCTGGAGAGCTTCTTAGTTGAGATTATCGCTGATATTTTCAAGGTGAAAGACGATTTGGCGGATGGGTTTTTGGTGGATAAGTTGCTGGATAAGACGGGGATGAAGGCAGTGGCGGACCCAGCTTTTGTTTTCTATGGGGGCGTAGTTAAACATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

180

Amino Acids

19.27

Weight (kDa)

5.18

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
6PGD	PF00393	85 - 163	9.1e-22	6-phosphogluconate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64190 AT5G41670 AT5G41670 AT5G41670 AT5G41670
fragaria_vesca	FvH4_4g04820
malus_domestica	MD06G1098700.v1.1 MD14G1117900.v1.1
prunus_persica	Prupe.5G112300_v2.0.a1 Prupe.5G112300_v2.0.a1
pyrus_communis	pycom06g09400
rosa_chinensis	RchiOBHm_Chr7g0195821
rosa_laevigata	RLG00000004086
rosa_multiflora	Rmu_sc0002445.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260070 Rroxscaffold_4G00304940
rosa_rugosa	Rorug07G0026400
rosa_samantha	Rh1DG221600 Rh7AG154400 Rh7BG156200 Rh7CG159900 Rh7DG155500
rosa_wichuraiana	Rw7G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AciI	CCGC	7 cut(s)	57, 102, 211, 246, 330, 443, 497
AclI	AACGTT	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	2 cut(s)	36, 45
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	319, 424
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	4 cut(s)	332, 364, 422, 454
AluBI	AGCT	5 cut(s)	8, 292, 385, 393, 506
AluI	AGCT	5 cut(s)	8, 292, 385, 393, 506
Alw26I	GTCTC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	4 cut(s)	52, 228, 303, 351
ApeKI	GCWGC	2 cut(s)	5, 289
ApoI	RAATTY	1 cut(s)	340
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
AspS9I	GGNCC	4 cut(s)	53, 163, 228, 499
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	439
AsuII	TTCGAA	1 cut(s)	338
AsuNHI	GCTAGC	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	163, 499
BbvI	GCAGC	2 cut(s)	17, 301
BccI	CCATC	3 cut(s)	35, 68, 440
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	4 cut(s)	6, 102, 211, 290
BlsI	GCNGC	4 cut(s)	7, 103, 212, 291
Bme1390I	CCNGG	2 cut(s)	157, 171
Bme18I	GGWCC	2 cut(s)	163, 499
BmeT110I	CYCGRG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	53, 163, 228, 499
BmiI	GGNNCC	3 cut(s)	55, 165, 501
BmrFI	CCNGG	2 cut(s)	157, 171
BmtI	GCTAGC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	2 cut(s)	36, 45
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	451, 489
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	17, 301
BseYI	CCCAGC	1 cut(s)	502
BshFI	GGCC	4 cut(s)	54, 230, 305, 353
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	33, 157
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	4 cut(s)	54, 230, 305, 353
BsoBI	CYCGRG	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	7 cut(s)	57, 102, 211, 246, 330, 443, 497
BspANI	GGCC	4 cut(s)	54, 230, 305, 353
BspLI	GGNNCC	3 cut(s)	55, 165, 501
BspMI	ACCTGC	1 cut(s)	151
BspOI	GCTAGC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	136
BssNI	GRCGYC	2 cut(s)	36, 45
Bst2UI	CCWGG	1 cut(s)	171
BstACI	GRCGYC	2 cut(s)	36, 45
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	10, 332
BstDEI	CTNAG	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	451, 489
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	155, 169
BstV1I	GCAGC	2 cut(s)	17, 301
BsuRI	GGCC	4 cut(s)	54, 230, 305, 353
BtgZI	GCGATG	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	451, 489
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	10, 332
Cfr13I	GGNCC	4 cut(s)	53, 163, 228, 499
CseI	GACGC	2 cut(s)	25, 53
CviAII	CATG	2 cut(s)	152, 236
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DraI	TTTAAA	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	351
EciI	GGCGGA	2 cut(s)	458, 512
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	163, 499
Eco88I	CYCGRG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	155, 239
FaiI	YATR	6 cut(s)	153, 176, 237, 287, 519, 537
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	151, 235
FauI	CCCGC	3 cut(s)	64, 239, 323
Fnu4HI	GCNGC	4 cut(s)	6, 102, 211, 290
FokI	GGATG	2 cut(s)	458, 496
Fsp4HI	GCNGC	4 cut(s)	6, 102, 211, 290
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	4 cut(s)	6, 102, 211, 290
GsaI	CCCAGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	4 cut(s)	54, 230, 305, 353
HapII	CCGG	2 cut(s)	33, 157
HgaI	GACGC	2 cut(s)	25, 53
Hin1I	GRCGYC	2 cut(s)	36, 45
Hin1II	CATG	2 cut(s)	155, 239
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	33, 157
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	2 cut(s)	43, 273
Hpy188I	TCNGA	2 cut(s)	301, 346
Hpy188III	TCNNGA	2 cut(s)	189, 265
Hpy8I	GTNNAC	2 cut(s)	43, 273
Hpy99I	CGWCG	5 cut(s)	41, 53, 101, 134, 314
HpyAV	CCTTC	2 cut(s)	236, 481
HpyCH4IV	ACGT	2 cut(s)	184, 312
HpyCH4V	TGCA	2 cut(s)	235, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	2 cut(s)	184, 312
Hsp92I	GRCGYC	2 cut(s)	36, 45
Hsp92II	CATG	2 cut(s)	155, 239
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	98, 382
LpnPI	CCDG	9 cut(s)	46, 146, 156, 170, 174, 183, 371, 455, 516
Lsp1109I	GCAGC	2 cut(s)	17, 301
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	2 cut(s)	184, 312
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	331
MluCI	AATT	2 cut(s)	122, 340
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	2 cut(s)	116, 295
MseI	TTAA	2 cut(s)	72, 531
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	2 cut(s)	33, 157
MspR9I	CCNGG	2 cut(s)	157, 171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	503
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	136
NheI	GCTAGC	1 cut(s)	8
NlaIII	CATG	2 cut(s)	155, 239
NlaIV	GGNNCC	3 cut(s)	55, 165, 501
NspV	TTCGAA	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	4 cut(s)	7, 103, 212, 291
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	163
Psp1406I	AACGTT	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	55, 165, 501
PspPI	GGNCC	4 cut(s)	53, 163, 228, 499
PspPPI	RGGWCCY	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	72, 531
SatI	GCNGC	4 cut(s)	6, 102, 211, 290
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	4 cut(s)	53, 163, 228, 499
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	157, 171
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	2 cut(s)	163, 499
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	122, 340
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	7 cut(s)	57, 102, 211, 246, 330, 443, 497
SspMI	CTAG	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	155, 169
TaiI	ACGT	2 cut(s)	187, 315
TaqI	TCGA	2 cut(s)	18, 338
TasI	AATT	2 cut(s)	122, 340
TauI	GCSGC	2 cut(s)	104, 213
Tru1I	TTAA	2 cut(s)	72, 531
Tru9I	TTAA	2 cut(s)	72, 531
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	2 cut(s)	5, 289
TspDTI	ATGAA	3 cut(s)	115, 250, 500
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	498
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	163, 499
XapI	RAATTY	1 cut(s)	340
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.