Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008259

Physical Location & Seq

Genomic Coordinates Reverse (-)

25585057 .. 25585729

Gene Structure 673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTGAAGGCGGGTCGGGTAACTTCATCAAGATGTCCACAACGGAATCGAGTACGGCGATATGTAGCTGATTTTGGAGGCCTACGATGTGTTGAAGAACATCGGCAGCTTTCGAATTCGAAGTTGGCCGAAATCTTTGACGAGTGGAACAAAGGGGAGCTGGAGAGTTTCTTAGTTAAGATTATCGCTGATATTTTCAAGGTGAAAGACGATTTGGCGGATGAGTTTTTGGTGGATAAGATGTTGGATAAGACAGGGATGAAGGGCACCGGGAAATGGATGGAGGAGAGGGAGAGCGCCGAGGAGGAGACTATCCGTACTATCCGTAAGCGCGTCCTCAAGTCCGCCGCCGATTCTCGCTTTCTTCTTTGGCGAGGCCTCTACTTGTCATCATCGGTATCCACTACCGCAGTCGCCACCCGCGCCTCGGAGCTAGTCAAGTACAGCGAAACAGAGCCTATCCGTGGACACTTTAGCTCGGTGAGGGGCTTGGAAGCCAAAGGCTTGCCGATGGATGATGCCGAGGCAATCACATCCGCCGTTTCCGAGTTTCCACTTATAGCTTGGAGAATTTGCACCAATTGCAGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

197

Amino Acids

22.3

Weight (kDa)

8.67

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
6PGD	PF00393	33 - 110	3.8e-19	6-phosphogluconate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64190 AT5G41670 AT5G41670 AT5G41670 AT5G41670
fragaria_vesca	FvH4_4g04820
malus_domestica	MD06G1098700.v1.1 MD14G1117900.v1.1
prunus_persica	Prupe.5G112300_v2.0.a1 Prupe.5G112300_v2.0.a1
pyrus_communis	pycom06g09400
rosa_chinensis	RchiOBHm_Chr7g0195821
rosa_laevigata	RLG00000004086
rosa_multiflora	Rmu_sc0002445.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260070 Rroxscaffold_4G00304940
rosa_rugosa	Rorug07G0026400
rosa_samantha	Rh1DG221600 Rh7AG154400 Rh7BG156200 Rh7CG159900 Rh7DG155500
rosa_wichuraiana	Rw7G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccII	CGCG	2 cut(s)	333, 423
AciI	CCGC	7 cut(s)	11, 218, 345, 348, 408, 421, 537
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	2 cut(s)	115, 570
AfaI	GTAC	3 cut(s)	54, 319, 443
AfiI	CCNNNNNNNGG	3 cut(s)	276, 427, 464
AgsI	TTSAA	2 cut(s)	95, 199
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 197, 229
AluBI	AGCT	6 cut(s)	68, 109, 160, 433, 477, 563
AluI	AGCT	6 cut(s)	68, 109, 160, 433, 477, 563
Alw26I	GTCTC	1 cut(s)	302
AoxI	GGCC	3 cut(s)	79, 126, 376
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	2 cut(s)	115, 570
AspLEI	GCGC	3 cut(s)	299, 333, 425
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	16, 214, 493
AsuII	TTCGAA	2 cut(s)	113, 119
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	274, 505
BceAI	ACGGC	2 cut(s)	71, 524
BciVI	GTATCC	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	2 cut(s)	107, 348
BlsI	GCNGC	2 cut(s)	108, 349
Bme1390I	CCNGG	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	182
Bpu14I	TTCGAA	2 cut(s)	113, 119
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	271
BsaJI	CCNNGG	4 cut(s)	300, 426, 463, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 427, 464
BseDI	CCNNGG	4 cut(s)	300, 426, 463, 522
BseGI	GGATG	5 cut(s)	226, 264, 285, 520, 533
BseLI	CCNNNNNNNGG	3 cut(s)	276, 427, 464
BseRI	GAGGAG	3 cut(s)	299, 317, 320
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	2 cut(s)	333, 423
BshFI	GGCC	3 cut(s)	81, 128, 378
BshNI	GGYRCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	3 cut(s)	276, 427, 464
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	81, 128, 378
Bsp119I	TTCGAA	2 cut(s)	113, 119
Bsp1286I	GDGCHC	1 cut(s)	269
BspACI	CCGC	7 cut(s)	11, 218, 345, 348, 408, 421, 537
BspANI	GGCC	3 cut(s)	81, 128, 378
BspFNI	CGCG	2 cut(s)	333, 423
BspLI	GGNNCC	1 cut(s)	268
BspT104I	TTCGAA	2 cut(s)	113, 119
BspT107I	GGYRCC	1 cut(s)	266
BssECI	CCNNGG	4 cut(s)	300, 426, 463, 522
BstAPI	GCANNNNNTGC	1 cut(s)	582
BstBI	TTCGAA	2 cut(s)	113, 119
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	1 cut(s)	172
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	5 cut(s)	226, 264, 285, 520, 533
BstFNI	CGCG	2 cut(s)	333, 423
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	3 cut(s)	299, 333, 425
BstMAI	GTCTC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 582
BstSCI	CCNGG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	2 cut(s)	333, 423
BstV1I	GCAGC	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	3 cut(s)	81, 128, 378
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	5 cut(s)	226, 264, 285, 520, 533
Cac8I	GCNNGC	1 cut(s)	506
CfoI	GCGC	3 cut(s)	299, 333, 425
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	3 cut(s)	53, 318, 442
CviQI	GTAC	3 cut(s)	53, 318, 442
DdeI	CTNAG	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	126
EciI	GGCGGA	3 cut(s)	233, 334, 526
Eco147I	AGGCCT	2 cut(s)	81, 378
EcoRI	GAATTC	1 cut(s)	115
FaiI	YATR	2 cut(s)	63, 560
FauI	CCCGC	2 cut(s)	4, 428
Fnu4HI	GCNGC	2 cut(s)	107, 348
FokI	GGATG	5 cut(s)	233, 271, 292, 520, 527
Fsp4HI	GCNGC	2 cut(s)	107, 348
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	3 cut(s)	298, 332, 424
GluI	GCNGC	2 cut(s)	107, 348
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	81, 128, 378
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	3 cut(s)	299, 333, 425
Hin6I	GCGC	3 cut(s)	297, 331, 423
HinP1I	GCGC	3 cut(s)	297, 331, 423
HinfI	GANTC	2 cut(s)	46, 353
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	3 cut(s)	16, 214, 493
Hpy166II	GTNNAC	2 cut(s)	38, 467
Hpy188I	TCNGA	2 cut(s)	430, 547
Hpy188III	TCNNGA	1 cut(s)	30
Hpy8I	GTNNAC	2 cut(s)	38, 467
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	576, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 582
HpyF3I	CTNAG	1 cut(s)	172
HspAI	GCGC	3 cut(s)	297, 331, 423
LmnI	GCTCC	2 cut(s)	157, 430
LpnPI	CCDG	3 cut(s)	146, 240, 283
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	107, 356
MfeI	CAATTG	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	3 cut(s)	115, 570, 580
MmeI	TCCRAC	1 cut(s)	225
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	31
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	271
MunI	CAATTG	1 cut(s)	580
MvnI	CGCG	2 cut(s)	333, 423
MwoI	GCNNNNNNNGC	2 cut(s)	422, 582
NciI	CCSGG	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	2 cut(s)	325, 547
NspV	TTCGAA	2 cut(s)	113, 119
PceI	AGGCCT	2 cut(s)	81, 378
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	46, 353
PkrI	GCNGC	2 cut(s)	108, 349
PspN4I	GGNNCC	1 cut(s)	268
RsaI	GTAC	3 cut(s)	54, 319, 443
RsaNI	GTAC	3 cut(s)	53, 318, 442
RseI	CAYNNNNRTG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	107, 348
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	7 cut(s)	70, 111, 162, 204, 435, 479, 565
SfaNI	GCATC	1 cut(s)	508
SfuI	TTCGAA	2 cut(s)	113, 119
SmiMI	CAYNNNNRTG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	115, 570, 580
SseBI	AGGCCT	2 cut(s)	81, 378
SsiI	CCGC	7 cut(s)	11, 218, 345, 348, 408, 421, 537
SspMI	CTAG	1 cut(s)	434
StuI	AGGCCT	2 cut(s)	81, 378
StyD4I	CCNGG	1 cut(s)	269
TaqI	TCGA	3 cut(s)	49, 113, 119
TasI	AATT	3 cut(s)	115, 570, 580
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	46, 353
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	15, 275
TspGWI	ACGGA	4 cut(s)	58, 305, 314, 452
XapI	RAATTY	2 cut(s)	115, 570
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.