Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0017283

Physical Location & Seq

Genomic Coordinates Reverse (-)

5934319 .. 5937431

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGACTCGTCTCTTACTGGAAGTGATGTCTTCAGCAGAACCCTCCACATCTAAGTCGCGGTCTACAGCCTTGTTCTTTTTTCTTGGAGGGATAGTCATGCTCATCATCCTGCTTATAATTGTATATATCTTTCGGAAAAAGATCAAACCAGAAGAGATTAAGAAGTTGGTAGCAAGAGCAAGAAAACGGCCAGCATCGACAGACGCATTCAGTGGAATCCTTAGAACAATAAGCTATTTTGACTTCCCAACATTGAAGAAGGCAACGAAGAACTTCCATAAGAGCAATCTACTTGGGAGAGGTGGCTTCGGCCCTGTCTACAAGGGAAAATTAAAAGATGGGAGGTTAATTGCTGTTAAGAGGTTATCTCTTGATAAATCCCAACAAGGAGAAAATGAGTTTCTTGCAGAGGTAAGGTTGATCACTAGCGTCCAACACAGGAACTTGGTTCAACTTGTTGGATGTTGTTCACACGGGCCTCAGCGACTCTTGGTATATGAGTACATGAAAAACAAGAGCTTGGACCATATAATATATGGGAAAAGTGATCTGTTCCTGAACTGGAGCACTAGGTTCCAGATAATTGTTGGAATCGCTAGAGGCTTACAATATCTACATGAGGATTCCCCACTAAGAATTATCCACCGAGATATCAAGGCGAGCAACATTCTTCTTGATGAAAAGTTTCAACCAAGGATTGGAGATTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTATCTCAGTACAACATTTGCGGGAACTCTAGGATATACAGCGCCTGAATATGCTATTAGAGGACAACTGTCTGAAAAGGCGGATATATATAGTTTTGGAGTCCTTGTGCTTGAAATAATTAGTGGCAGGAAAAACACAGATCTTAAGCTAGCATCAGAAATGCAATACCTGCCTGAATACGCGTGGAAGTTATACGAGAGATCAGAGGTGACTGATCTACTCGATCCAAAACTGCATGAAGATGGATTTGAGGGGAAGGATGTTATGCAAGCAATCAATGTGGCATTCTTATGCCTTCAGCCTCATGCAAATCTGAGACCCCCCATGTCAGACATTGTAGCAATGTTAACATGCAAAGTTCAGATGACTGAAACACTACCTATGAAACCGGCCTTCTTGGACAGAAGACGAAAGAAGGATGAAAACATTTCATGGGACACAATGTCTGATGTTTTCCCCTCTCCCATTGATCATAGTGAATCTCCCTCGTTACCTAAACAACATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

417

Amino Acids

47.35

Weight (kDa)

9.34

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	92 - 294	2.1e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 321	4.4e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017283)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06650
malus_domestica	MD13G1236800.v1.1 MD16G1241900.v1.1
prunus_persica	Prupe.1G068800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398541
rosa_laevigata	RLG00000009346
rosa_roxburghii	Rroxscaffold_5G00343510
rosa_rugosa	Rorug04G0009200
rosa_samantha	Rh4AG087000 Rh4BG083700 Rh4CG095200 Rh4DG078600
rosa_wichuraiana	Rw4G007260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	918
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccI	GTMKAC	2 cut(s)	62, 318
AccII	CGCG	2 cut(s)	58, 923
AciI	CCGC	3 cut(s)	58, 761, 821
AclWI	GGATC	1 cut(s)	959
AcoI	YGGCCR	1 cut(s)	188
AcuI	CTGAAG	3 cut(s)	15, 750, 1022
AfaI	GTAC	2 cut(s)	503, 751
AfiI	CCNNNNNNNGG	1 cut(s)	698
AflII	CTTAAG	1 cut(s)	884
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	4 cut(s)	256, 452, 689, 854
AhdI	GACNNNNNGTC	1 cut(s)	1183
AluBI	AGCT	5 cut(s)	234, 519, 716, 740, 889
AluI	AGCT	5 cut(s)	234, 519, 716, 740, 889
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	2 cut(s)	14, 1051
AlwI	GGATC	1 cut(s)	959
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	4 cut(s)	188, 310, 476, 1131
Asp700I	GAANNNNTTC	2 cut(s)	272, 684
AspLEI	GCGC	1 cut(s)	784
AspS9I	GGNCC	3 cut(s)	311, 476, 523
AsuHPI	GGTGA	1 cut(s)	961
AsuNHI	GCTAGC	2 cut(s)	712, 889
AvaII	GGWCC	1 cut(s)	523
BbsI	GAAGAC	3 cut(s)	21, 738, 1153
Bbv12I	GWGCWC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	480
BccI	CCATC	2 cut(s)	332, 977
BceAI	ACGGC	1 cut(s)	203
BclI	TGATCA	2 cut(s)	420, 1210
BcoDI	GTCTC	2 cut(s)	14, 1051
BfaI	CTAG	7 cut(s)	426, 570, 597, 713, 717, 770, 890
BfmI	CTRYAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	785
BfrI	CTTAAG	1 cut(s)	884
BfuAI	ACCTGC	1 cut(s)	918
BglII	AGATCT	1 cut(s)	880
Bme18I	GGWCC	1 cut(s)	523
BmeRI	GACNNNNNGTC	1 cut(s)	1183
BmgT120I	GGNCC	3 cut(s)	311, 476, 523
BmiI	GGNNCC	1 cut(s)	575
BmsI	GCATC	2 cut(s)	203, 902
BmtI	GCTAGC	2 cut(s)	716, 893
BoxI	GACNNNNGTC	1 cut(s)	808
BpiI	GAAGAC	3 cut(s)	21, 738, 1153
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BpmI	CTGGAG	1 cut(s)	583
Bpu10I	CCTNAGC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	1051
BsaJI	CCNNGG	1 cut(s)	692
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 831, 861
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse118I	RCCGGY	1 cut(s)	1129
Bse1I	ACTGG	2 cut(s)	21, 566
Bse3DI	GCAATG	1 cut(s)	1089
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	4 cut(s)	105, 467, 1006, 1165
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	3 cut(s)	494, 760, 1046
BseNI	ACTGG	2 cut(s)	21, 566
Bsh1236I	CGCG	2 cut(s)	58, 923
BshFI	GGCC	4 cut(s)	190, 312, 478, 1133
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	1130
BslFI	GGGAC	1 cut(s)	1190
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmAI	GTCTC	2 cut(s)	14, 1051
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	1190
BsmI	GAATGC	2 cut(s)	206, 1025
BsnI	GGCC	4 cut(s)	190, 312, 478, 1133
Bso31I	GGTCTC	1 cut(s)	1051
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp143I	GATC	8 cut(s)	141, 420, 547, 880, 941, 955, 964, 1210
BspACI	CCGC	3 cut(s)	58, 761, 821
BspANI	GGCC	4 cut(s)	190, 312, 478, 1133
BspCNI	CTCAG	3 cut(s)	493, 759, 1047
BspFNI	CGCG	2 cut(s)	58, 923
BspLI	GGNNCC	1 cut(s)	575
BspMI	ACCTGC	1 cut(s)	918
BspOI	GCTAGC	2 cut(s)	716, 893
BspPI	GGATC	1 cut(s)	959
BspTI	CTTAAG	1 cut(s)	884
BspTNI	GGTCTC	1 cut(s)	1051
BsrDI	GCAATG	1 cut(s)	1089
BsrFI	RCCGGY	1 cut(s)	1129
BsrI	ACTGG	2 cut(s)	21, 566
BssAI	RCCGGY	1 cut(s)	1129
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	8 cut(s)	141, 420, 547, 880, 941, 955, 964, 1210
BssT1I	CCWWGG	1 cut(s)	692
Bst4CI	ACNGT	1 cut(s)	810
Bst6I	CTCTTC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	884
BstAPI	GCANNNNNTGC	1 cut(s)	910
BstC8I	GCNNGC	5 cut(s)	192, 661, 714, 891, 1011
BstDEI	CTNAG	6 cut(s)	51, 221, 480, 632, 746, 1055
BstF5I	GGATG	4 cut(s)	105, 467, 1006, 1165
BstFNI	CGCG	2 cut(s)	58, 923
BstH2I	RGCGCY	1 cut(s)	785
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	8 cut(s)	144, 423, 550, 883, 944, 958, 967, 1213
BstMAI	GTCTC	2 cut(s)	14, 1051
BstMBI	GATC	8 cut(s)	141, 420, 547, 880, 941, 955, 964, 1210
BstMWI	GCNNNNNNNGC	1 cut(s)	910
BstNSI	RCATGY	1 cut(s)	1095
BstPAI	GACNNNNGTC	1 cut(s)	808
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	58, 923
BstV2I	GAAGAC	3 cut(s)	21, 738, 1153
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BsuRI	GGCC	4 cut(s)	190, 312, 478, 1133
BtsCI	GGATG	4 cut(s)	105, 467, 1006, 1165
BtsIMutI	CAGTG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	5 cut(s)	192, 661, 714, 891, 1011
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	1 cut(s)	784
Cfr10I	RCCGGY	1 cut(s)	1129
Cfr13I	GGNCC	3 cut(s)	311, 476, 523
CseI	GACGC	2 cut(s)	212, 418
Csp6I	GTAC	2 cut(s)	502, 750
CspCI	CAANNNNNGTGG	2 cut(s)	1002, 1037
CviAII	CATG	8 cut(s)	97, 505, 617, 977, 1046, 1066, 1092, 1173
CviQI	GTAC	2 cut(s)	502, 750
DdeI	CTNAG	6 cut(s)	51, 221, 480, 632, 746, 1055
DpnI	GATC	8 cut(s)	143, 422, 549, 882, 943, 957, 966, 1212
DpnII	GATC	8 cut(s)	141, 420, 547, 880, 941, 955, 964, 1210
DriI	GACNNNNNGTC	1 cut(s)	1183
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	147
Eam1105I	GACNNNNNGTC	1 cut(s)	1183
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	836
Eco130I	CCWWGG	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	1051
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	3 cut(s)	15, 750, 1022
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	692
ErhI	CCWWGG	1 cut(s)	692
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	8 cut(s)	100, 508, 620, 980, 1049, 1069, 1095, 1176
FaqI	GGGAC	1 cut(s)	1190
FatI	CATG	8 cut(s)	96, 504, 616, 976, 1045, 1065, 1091, 1172
FauI	CCCGC	1 cut(s)	754
FbaI	TGATCA	2 cut(s)	420, 1210
FblI	GTMKAC	2 cut(s)	62, 318
FokI	GGATG	4 cut(s)	92, 474, 1013, 1172
FspBI	CTAG	7 cut(s)	426, 570, 597, 713, 717, 770, 890
GlaI	GCGC	1 cut(s)	783
GsuI	CTGGAG	1 cut(s)	583
HaeII	RGCGCY	1 cut(s)	785
HaeIII	GGCC	4 cut(s)	190, 312, 478, 1133
HapII	CCGG	1 cut(s)	1130
HgaI	GACGC	2 cut(s)	212, 418
HhaI	GCGC	1 cut(s)	784
Hin1II	CATG	8 cut(s)	100, 508, 620, 980, 1049, 1069, 1095, 1176
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HindIII	AAGCTT	1 cut(s)	738
HinfI	GANTC	7 cut(s)	4, 216, 486, 591, 623, 840, 1220
HpaI	GTTAAC	1 cut(s)	1089
HpaII	CCGG	1 cut(s)	1130
HphI	GGTGA	1 cut(s)	961
Hpy166II	GTNNAC	4 cut(s)	63, 319, 470, 1089
Hpy188I	TCNGA	8 cut(s)	135, 814, 898, 946, 1056, 1072, 1104, 1189
Hpy188III	TCNNGA	4 cut(s)	371, 556, 577, 674
Hpy8I	GTNNAC	4 cut(s)	63, 319, 470, 1089
HpyAV	CCTTC	5 cut(s)	253, 991, 1046, 1144, 1150
HpyCH4III	ACNGT	1 cut(s)	810
HpyCH4V	TGCA	6 cut(s)	407, 904, 976, 1009, 1049, 1095
HpyF10VI	GCNNNNNNNGC	1 cut(s)	910
HpyF3I	CTNAG	6 cut(s)	51, 221, 480, 632, 746, 1055
Hsp92II	CATG	8 cut(s)	100, 508, 620, 980, 1049, 1069, 1095, 1176
HspAI	GCGC	1 cut(s)	782
Ksp22I	TGATCA	2 cut(s)	420, 1210
KspAI	GTTAAC	1 cut(s)	1089
Kzo9I	GATC	8 cut(s)	141, 420, 547, 880, 941, 955, 964, 1210
LmnI	GCTCC	1 cut(s)	564
LweI	GCATC	2 cut(s)	203, 902
MaeI	CTAG	7 cut(s)	426, 570, 597, 713, 717, 770, 890
MaeIII	GTNAC	2 cut(s)	949, 1230
MalI	GATC	8 cut(s)	143, 422, 549, 882, 943, 957, 966, 1212
MboI	GATC	8 cut(s)	141, 420, 547, 880, 941, 955, 964, 1210
MboII	GAAGA	9 cut(s)	21, 164, 268, 280, 662, 715, 743, 992, 1158
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	6 cut(s)	117, 329, 348, 582, 636, 858
MluI	ACGCGT	1 cut(s)	921
MlyI	GAGTC	2 cut(s)	480, 849
MmeI	TCCRAC	3 cut(s)	439, 457, 568
MroXI	GAANNNNTTC	2 cut(s)	272, 684
MseI	TTAA	6 cut(s)	159, 332, 347, 357, 885, 1088
MslI	CAYNNNNRTG	2 cut(s)	981, 1030
MspCI	CTTAAG	1 cut(s)	884
MspI	CCGG	1 cut(s)	1130
Mva1269I	GAATGC	2 cut(s)	206, 1025
MvnI	CGCG	2 cut(s)	58, 923
MwoI	GCNNNNNNNGC	1 cut(s)	910
NdeII	GATC	8 cut(s)	141, 420, 547, 880, 941, 955, 964, 1210
NheI	GCTAGC	2 cut(s)	712, 889
NlaIII	CATG	8 cut(s)	100, 508, 620, 980, 1049, 1069, 1095, 1176
NlaIV	GGNNCC	1 cut(s)	575
NmuCI	GTSAC	1 cut(s)	949
NspI	RCATGY	1 cut(s)	1095
PctI	GAATGC	2 cut(s)	206, 1025
PdmI	GAANNNNTTC	2 cut(s)	272, 684
PfeI	GAWTC	4 cut(s)	216, 591, 623, 1220
PflMI	CCANNNNNTGG	1 cut(s)	698
PleI	GAGTC	2 cut(s)	480, 848
PpsI	GAGTC	2 cut(s)	480, 848
PshAI	GACNNNNGTC	1 cut(s)	808
PsiI	TTATAA	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	575
PspPI	GGNCC	3 cut(s)	311, 476, 523
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	880
RsaI	GTAC	2 cut(s)	503, 751
RsaNI	GTAC	2 cut(s)	502, 750
RseI	CAYNNNNRTG	2 cut(s)	981, 1030
SaqAI	TTAA	6 cut(s)	159, 332, 347, 357, 885, 1088
Sau3AI	GATC	8 cut(s)	141, 420, 547, 880, 941, 955, 964, 1210
Sau96I	GGNCC	3 cut(s)	311, 476, 523
SchI	GAGTC	2 cut(s)	480, 849
SduI	GDGCHC	1 cut(s)	569
SfaNI	GCATC	2 cut(s)	203, 902
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	981, 1030
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	6 cut(s)	117, 329, 348, 582, 636, 858
SsiI	CCGC	3 cut(s)	58, 761, 821
SspMI	CTAG	7 cut(s)	426, 570, 597, 713, 717, 770, 890
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	1 cut(s)	810
TaqI	TCGA	2 cut(s)	197, 963
TasI	AATT	6 cut(s)	117, 329, 348, 582, 636, 858
TatI	WGTACW	2 cut(s)	501, 749
TfiI	GAWTC	4 cut(s)	216, 591, 623, 1220
Tru1I	TTAA	6 cut(s)	159, 332, 347, 357, 885, 1088
Tru9I	TTAA	6 cut(s)	159, 332, 347, 357, 885, 1088
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	949
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	6 cut(s)	521, 693, 993, 1139, 1161, 1176
TspRI	CASTG	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	698
Vha464I	CTTAAG	1 cut(s)	884
VpaK11BI	GGWCC	1 cut(s)	523
XceI	RCATGY	1 cut(s)	1095
XcmI	CCANNNNNNNNNTGG	2 cut(s)	533, 584
XmiI	GTMKAC	2 cut(s)	62, 318
XmnI	GAANNNNTTC	2 cut(s)	272, 684
XspI	CTAG	7 cut(s)	426, 570, 597, 713, 717, 770, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.