Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0017283

Physical Location & Seq

Genomic Coordinates Reverse (-)

24081353 .. 24083425

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1236800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGACAACGGGACCCTCTGCTTCTAAGATGCCGTCTCCAGCGTTGTTCTTTTTCCTTGGAGGGCTAGTCACGCTCATAATATTGCTAGTTCTTCTATTTGTCTTTCGGAAAAAGATCAAACCAGAAGATATTAAGAAATTGGTAGCAGTAGTGAGAAGGCAACCTGCAGCATCGACAGATGTTTTCAGTGGGAACCTTCGAACAATAACCTACTTCGACTTTAAGACATTGAAGAAGGCAACCAAGAACTTTCATTCTGCTAATCTCCTTGGAGTAGGTGGATTTGGCCCTGTCTATCAGGGGAGACTAGGAGATGGGAAGTTAATTGCTGCTAAGAAATTGTGCCTTAACAAATCCCAACAAGGAGAATCAGAGTTTCTTACAGAGGTAAAGTTGATCACAAGCGTCCAACACAAGAACTTGGTTCGTCTAATTGGATGCTGCTCTGATGGGCCTCAACGGCTGCTTGTGTATGAATACATGAAAAACAGGAGCTTGGACCTCATTATTTATGGAAAGAGTGGTCAGTTCTTGAAATGGAGCACCAGGTTCCAGATAATTGTCGGTGTTGCTCGAGGGTTACAATATCTACACGAGGATTCCCCATTAAGAATTATCCACAGAGATATCAAGGCAAGTAACATTCTTCTCGATGACAAATTCCAACCGAGGATTGGAGATTTCGGGTTGGCTAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGTACCGCATTTGCTGGAACTTTAGGTTATACGGCACCGGAATATGCTATTAGAGGAGAATTGTCTGAAAAGGCGGACATCTATAGTTTTGGGGTTCTTGTGCTCGAAATAATCAGCGGTAGAAGAAACACAGATCTCACTTTATCATCAGAAATGCAATACCTCCCTGAATATGCATGGAAATTATTTGAGACGGCGAATGTGATTAATCTAATAGATCCAAAAATGAAAGAAGACGGATATGTGGAAAGGGATGTTTTGCAAGCAATCCAAGTAGCCTTCTTGTGCCTTCAGCCTCACGCAAACTTGAGACCCCCAATGTCGGAGGTTGTAGCAATGTTAACGTGCAAAGTGCAAATGACTGGAACACCTATGAAACCCGCCTTCTTGGACAGAATGCGAACGAAAGATCGGAATATTTCGTGGGATACTATAACTGAGGCTTTCCCATCTCCCTTGCAGAGTGAGTCTCCCTCAGTAGCTAAACCATCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

407

Amino Acids

45.48

Weight (kDa)

9.34

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 292	2.8e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	87 - 354	3.4e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017283)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06650
malus_domestica	MD13G1236800.v1.1 MD16G1241900.v1.1
prunus_persica	Prupe.1G068800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398541
rosa_laevigata	RLG00000009346
rosa_roxburghii	Rroxscaffold_5G00343510
rosa_rugosa	Rorug04G0009200
rosa_samantha	Rh4AG087000 Rh4BG083700 Rh4CG095200 Rh4DG078600
rosa_wichuraiana	Rw4G007260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	757
AciI	CCGC	4 cut(s)	729, 797, 840, 1104
AclWI	GGATC	1 cut(s)	935
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	2 cut(s)	726, 998
AfaI	GTAC	1 cut(s)	727
AfiI	CCNNNNNNNGG	2 cut(s)	674, 1045
AgsI	TTSAA	2 cut(s)	232, 535
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	3 cut(s)	495, 716, 1205
AluI	AGCT	3 cut(s)	495, 716, 1205
Alw21I	GWGCWC	2 cut(s)	545, 828
Alw26I	GTCTC	5 cut(s)	39, 298, 908, 1027, 1197
AlwI	GGATC	1 cut(s)	935
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	2 cut(s)	286, 452
ApeKI	GCWGC	4 cut(s)	167, 329, 441, 463
ApoI	RAATTY	1 cut(s)	659
AseI	ATTAAT	1 cut(s)	930
AspS9I	GGNCC	4 cut(s)	11, 287, 452, 499
AsuII	TTCGAA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	2 cut(s)	11, 499
BanI	GGYRCC	1 cut(s)	757
BauI	CACGAG	1 cut(s)	593
BbsI	GAAGAC	2 cut(s)	714, 963
Bbv12I	GWGCWC	2 cut(s)	545, 828
BbvI	GCAGC	4 cut(s)	179, 316, 428, 450
BccI	CCATC	4 cut(s)	308, 443, 1180, 1219
BceAI	ACGGC	4 cut(s)	16, 476, 771, 933
BciT130I	CCWGG	1 cut(s)	547
BciVI	GTATCC	1 cut(s)	1144
BclI	TGATCA	1 cut(s)	396
BcoDI	GTCTC	5 cut(s)	39, 298, 908, 1027, 1197
BfaI	CTAG	4 cut(s)	65, 86, 308, 693
BfmI	CTRYAG	2 cut(s)	165, 805
BfuAI	ACCTGC	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	1144
BglI	GCCNNNNNGGC	1 cut(s)	460
BglII	AGATCT	1 cut(s)	856
BisI	GCNGC	4 cut(s)	168, 330, 442, 464
BlsI	GCNGC	4 cut(s)	169, 331, 443, 465
Bme1390I	CCNGG	1 cut(s)	547
Bme18I	GGWCC	2 cut(s)	11, 499
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	4 cut(s)	11, 287, 452, 499
BmiI	GGNNCC	5 cut(s)	12, 13, 194, 551, 759
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	3 cut(s)	18, 179, 428
BpiI	GAAGAC	2 cut(s)	714, 963
BplI	GAGNNNNNCTC	4 cut(s)	1177, 1209, 1181, 1213
BpmI	CTGGAG	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	1051
BsaI	GGTCTC	1 cut(s)	1027
BsaJI	CCNNGG	3 cut(s)	55, 268, 668
BsaWI	WCCGGW	1 cut(s)	760
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	2 cut(s)	674, 1045
Bse1I	ACTGG	1 cut(s)	1090
Bse3DI	GCAATG	1 cut(s)	1065
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	3 cut(s)	55, 268, 668
BseGI	GGATG	2 cut(s)	443, 982
BseLI	CCNNNNNNNGG	2 cut(s)	674, 1045
BseMI	GCAATG	1 cut(s)	1065
BseMII	CTCAG	2 cut(s)	1152, 1212
BseNI	ACTGG	1 cut(s)	1090
BseRI	GAGGAG	1 cut(s)	792
BseXI	GCAGC	4 cut(s)	179, 316, 428, 450
BshFI	GGCC	2 cut(s)	288, 454
BshNI	GGYRCC	1 cut(s)	757
BsiHKAI	GWGCWC	2 cut(s)	545, 828
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	761
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	674, 1045
BsmAI	GTCTC	5 cut(s)	39, 298, 908, 1027, 1197
BsmBI	CGTCTC	2 cut(s)	39, 908
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	1125
BsnI	GGCC	2 cut(s)	288, 454
Bso31I	GGTCTC	1 cut(s)	1027
BsoBI	CYCGRG	1 cut(s)	573
Bsp119I	TTCGAA	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	545, 828
Bsp143I	GATC	5 cut(s)	114, 396, 856, 940, 1132
BspACI	CCGC	4 cut(s)	729, 797, 840, 1104
BspANI	GGCC	2 cut(s)	288, 454
BspCNI	CTCAG	2 cut(s)	1153, 1211
BspLI	GGNNCC	5 cut(s)	12, 13, 194, 551, 759
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	935
BspT104I	TTCGAA	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	757
BspTNI	GGTCTC	1 cut(s)	1027
BsrDI	GCAATG	1 cut(s)	1065
BsrI	ACTGG	1 cut(s)	1090
BssECI	CCNNGG	3 cut(s)	55, 268, 668
BssMI	GATC	5 cut(s)	114, 396, 856, 940, 1132
BssSI	CACGAG	1 cut(s)	593
BssT1I	CCWWGG	2 cut(s)	55, 268
Bst2BI	CACGAG	1 cut(s)	593
Bst2UI	CCWGG	1 cut(s)	547
BstBI	TTCGAA	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	987
BstDEI	CTNAG	5 cut(s)	24, 333, 722, 1161, 1198
BstF5I	GGATG	2 cut(s)	443, 982
BstKTI	GATC	5 cut(s)	117, 399, 859, 943, 1135
BstMAI	GTCTC	5 cut(s)	39, 298, 908, 1027, 1197
BstMBI	GATC	5 cut(s)	114, 396, 856, 940, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 460
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	2 cut(s)	165, 805
BstV1I	GCAGC	4 cut(s)	179, 316, 428, 450
BstV2I	GAAGAC	2 cut(s)	714, 963
BstX2I	RGATCY	2 cut(s)	856, 940
BstYI	RGATCY	2 cut(s)	856, 940
BsuI	GTATCC	1 cut(s)	1144
BsuRI	GGCC	2 cut(s)	288, 454
BtsCI	GGATG	2 cut(s)	443, 982
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	987
Cfr13I	GGNCC	4 cut(s)	11, 287, 452, 499
CseI	GACGC	1 cut(s)	394
CsiI	ACCWGGT	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	726
CviAII	CATG	2 cut(s)	481, 900
CviQI	GTAC	1 cut(s)	726
DdeI	CTNAG	5 cut(s)	24, 333, 722, 1161, 1198
DpnI	GATC	5 cut(s)	116, 398, 858, 942, 1134
DpnII	GATC	5 cut(s)	114, 396, 856, 940, 1132
EciI	GGCGGA	1 cut(s)	812
Eco130I	CCWWGG	2 cut(s)	55, 268
Eco31I	GGTCTC	1 cut(s)	1027
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	11, 499
Eco57I	CTGAAG	2 cut(s)	726, 998
Eco88I	CYCGRG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	545
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	2 cut(s)	55, 268
EcoT22I	ATGCAT	1 cut(s)	901
ErhI	CCWWGG	2 cut(s)	55, 268
Esp3I	CGTCTC	2 cut(s)	39, 908
FaeI	CATG	2 cut(s)	484, 903
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	480, 899
FauI	CCCGC	1 cut(s)	1111
FbaI	TGATCA	1 cut(s)	396
Fnu4HI	GCNGC	4 cut(s)	168, 330, 442, 464
FokI	GGATG	2 cut(s)	450, 989
Fsp4HI	GCNGC	4 cut(s)	168, 330, 442, 464
FspBI	CTAG	4 cut(s)	65, 86, 308, 693
GluI	GCNGC	4 cut(s)	168, 330, 442, 464
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	288, 454
HapII	CCGG	1 cut(s)	761
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	2 cut(s)	484, 903
HincII	GTYRAC	1 cut(s)	1065
HindII	GTYRAC	1 cut(s)	1065
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	3 cut(s)	368, 599, 1190
HpaI	GTTAAC	1 cut(s)	1065
HpaII	CCGG	1 cut(s)	761
Hpy166II	GTNNAC	1 cut(s)	1065
Hpy188I	TCNGA	7 cut(s)	108, 373, 448, 790, 874, 1048, 1137
Hpy188III	TCNNGA	3 cut(s)	532, 553, 650
Hpy8I	GTNNAC	1 cut(s)	1065
HpyAV	CCTTC	6 cut(s)	150, 206, 229, 1012, 1022, 1117
HpyCH4IV	ACGT	1 cut(s)	1067
HpyCH4V	TGCA	7 cut(s)	167, 880, 899, 985, 1071, 1078, 1183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 460
HpyF3I	CTNAG	5 cut(s)	24, 333, 722, 1161, 1198
HpySE526I	ACGT	1 cut(s)	1067
Hsp92II	CATG	2 cut(s)	484, 903
KflI	GGGWCCC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	396
KspAI	GTTAAC	1 cut(s)	1065
Kzo9I	GATC	5 cut(s)	114, 396, 856, 940, 1132
LmnI	GCTCC	2 cut(s)	492, 540
Lsp1109I	GCAGC	4 cut(s)	179, 316, 428, 450
LweI	GCATC	3 cut(s)	18, 179, 428
MabI	ACCWGGT	1 cut(s)	545
MaeI	CTAG	4 cut(s)	65, 86, 308, 693
MaeII	ACGT	1 cut(s)	1067
MaeIII	GTNAC	3 cut(s)	67, 579, 638
MalI	GATC	5 cut(s)	116, 398, 858, 942, 1134
MboI	GATC	5 cut(s)	114, 396, 856, 940, 1132
MboII	GAAGA	8 cut(s)	83, 137, 244, 638, 691, 719, 858, 968
MflI	RGATCY	2 cut(s)	856, 940
MhlI	GDGCHC	2 cut(s)	545, 828
MluCI	AATT	9 cut(s)	137, 324, 338, 432, 558, 612, 659, 782, 905
MlyI	GAGTC	1 cut(s)	1199
MmeI	TCCRAC	3 cut(s)	433, 688, 1026
Mph1103I	ATGCAT	1 cut(s)	901
MseI	TTAA	7 cut(s)	132, 222, 323, 348, 608, 930, 1064
MspA1I	CMGCKG	1 cut(s)	840
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	547
Mva1269I	GAATGC	1 cut(s)	1125
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	2 cut(s)	70, 460
NdeII	GATC	5 cut(s)	114, 396, 856, 940, 1132
NlaIII	CATG	2 cut(s)	484, 903
NlaIV	GGNNCC	5 cut(s)	12, 13, 194, 551, 759
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	901
NspV	TTCGAA	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	573
PctI	GAATGC	1 cut(s)	1125
PfeI	GAWTC	2 cut(s)	368, 599
PkrI	GCNGC	4 cut(s)	169, 331, 443, 465
PleI	GAGTC	1 cut(s)	1198
PpsI	GAGTC	1 cut(s)	1198
PpuMI	RGGWCCY	1 cut(s)	11
PshBI	ATTAAT	1 cut(s)	930
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	5 cut(s)	12, 13, 194, 551, 759
PspPI	GGNCC	4 cut(s)	11, 287, 452, 499
PspPPI	RGGWCCY	1 cut(s)	11
PspXI	VCTCGAGB	1 cut(s)	573
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	856, 940
RsaI	GTAC	1 cut(s)	727
RsaNI	GTAC	1 cut(s)	726
SaqAI	TTAA	7 cut(s)	132, 222, 323, 348, 608, 930, 1064
SatI	GCNGC	4 cut(s)	168, 330, 442, 464
Sau3AI	GATC	5 cut(s)	114, 396, 856, 940, 1132
Sau96I	GGNCC	4 cut(s)	11, 287, 452, 499
SchI	GAGTC	1 cut(s)	1199
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	2 cut(s)	545, 828
SexAI	ACCWGGT	1 cut(s)	545
SfaNI	GCATC	3 cut(s)	18, 179, 428
SfcI	CTRYAG	2 cut(s)	165, 805
Sfr274I	CTCGAG	1 cut(s)	573
SfuI	TTCGAA	1 cut(s)	199
SinI	GGWCC	2 cut(s)	11, 499
SlaI	CTCGAG	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	573, 1030
SmoI	CTYRAG	2 cut(s)	573, 1030
Sse9I	AATT	9 cut(s)	137, 324, 338, 432, 558, 612, 659, 782, 905
SsiI	CCGC	4 cut(s)	729, 797, 840, 1104
SspI	AATATT	2 cut(s)	81, 1141
SspMI	CTAG	4 cut(s)	65, 86, 308, 693
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	2 cut(s)	55, 268
TaiI	ACGT	1 cut(s)	1070
TaqI	TCGA	6 cut(s)	173, 199, 216, 574, 651, 828
TasI	AATT	9 cut(s)	137, 324, 338, 432, 558, 612, 659, 782, 905
TfiI	GAWTC	2 cut(s)	368, 599
Tru1I	TTAA	7 cut(s)	132, 222, 323, 348, 608, 930, 1064
Tru9I	TTAA	7 cut(s)	132, 222, 323, 348, 608, 930, 1064
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	4 cut(s)	167, 329, 441, 463
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	5 cut(s)	242, 489, 497, 965, 1112
TspGWI	ACGGA	1 cut(s)	975
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	11, 499
VspI	ATTAAT	1 cut(s)	930
XapI	RAATTY	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XhoI	CTCGAG	1 cut(s)	573
XspI	CTAG	4 cut(s)	65, 86, 308, 693
Zsp2I	ATGCAT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.