Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017283

Physical Location & Seq

Genomic Coordinates Reverse (-)

15101462 .. 15103852

Gene Structure 2391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTCTCCAGCAGAACCCTCCAATTCTAAGTCACGGTCTACAGCCTTACTCTTTTTTCTTGGAGGGATAGTTATGCTCATCATTCTGCTTATAATTGTATTTATCTTTCGGAAAAAGATCAAACCAGAAGAGATCAAGAAGTTGGTAGCAAGAGTCAGAAAGCGGCCAGACGCTTTTAGTGGAATCCTTAGAACAATAAGCTATTTTGACTTCGCAACATTGAAGAAGGCAACCAAGAATTTTCATCAGGGAAATCTACTTGGAAAAGGTGGATTCGGCCCTGTCTATAGGGGAAAATTAAGAGATGGGAGATTGATTGCTGTTAAGAGGTTATCTCTTGATAAATCCCAACAAGGAGAAACAGAGTTTCTTGCAGAGGTAAGGTTGATCACTAGCGTCCAACACAGGAACTTGGTTCAACTTGTTGGATGTTGCTCACACGGGCCTCAGCGACTCCTTGTATATGAATACATGAAAAACAAGAGCTTGGACCGTATAATATATGGAAAAAGTGATCAGTTCCTGAACTGGGGCACTAGGTTCCAGATAATTGTTGGAATCGCTAGAGGGTTACAATATCTACATGAGGATTCCCCCCTAAGAATTATACACAGAGATATCAAGGCGAGCAACATTCTTCTCGATGAAAAATTTCAACCAAGGATTGGAGATTTTGGGCTGGCTAGGTTCTTCCCTGAAGATCAAGCTTATCTCAGTACAACATTTGCGGGAACTCTAGGATATACAGCACCTGAATATGCTATTAGAGGAGAATTGTCCGAAAAGGCGGATATATATAGTTTTGGAGTTCTTGTGCTTGAAATAATTAGTGGCAGGAAAAACACAGATCTTAGTCTAGCATCAGAAATGCAGTACCTGCCTGAATACGCGTGGAAGTTATACGAGAGATCAAAGGTGATGGATCTGCTTGATCCCAAACTGCAACAAGAAGGATTTGAGGAAAAGGATGTTATGCAAGCAATCAATGTGGCATTCTTATGCCTTCAGCCTCATGCAAATCTGAGACCCCCCATGTCAGACATTGTAGTAATGTTAACATGCAAAGTTCAGATGACCGGAACACTACCTATAAAACCGGTCTTTTTGGACAGCAGACGCACCAAGAATGAAAACCTTTCGTGGGATACAATGTCCGATGTTTTCCCTTCTCCCATTCAGAGTGAATCTCCCTCATTACCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

401

Amino Acids

45.53

Weight (kDa)

9.39

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 282	2e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	83 - 350	1.1e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017283)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06650
malus_domestica	MD13G1236800.v1.1 MD16G1241900.v1.1
prunus_persica	Prupe.1G068800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398541
rosa_laevigata	RLG00000009346
rosa_roxburghii	Rroxscaffold_5G00343510
rosa_rugosa	Rorug04G0009200
rosa_samantha	Rh4AG087000 Rh4BG083700 Rh4CG095200 Rh4DG078600
rosa_wichuraiana	Rw4G007260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	885
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	1 cut(s)	890
AciI	CCGC	3 cut(s)	163, 728, 788
AclWI	GGATC	2 cut(s)	926, 930
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	238, 650
AcuI	CTGAAG	2 cut(s)	717, 989
AfaI	GTAC	2 cut(s)	718, 875
AfiI	CCNNNNNNNGG	3 cut(s)	529, 665, 1141
AflIII	ACRYGT	1 cut(s)	888
AgeI	ACCGGT	1 cut(s)	1096
AgsI	TTSAA	4 cut(s)	223, 419, 656, 821
AluBI	AGCT	3 cut(s)	201, 486, 707
AluI	AGCT	3 cut(s)	201, 486, 707
Alw26I	GTCTC	2 cut(s)	9, 1018
AlwI	GGATC	2 cut(s)	926, 930
AlwNI	CAGNNNCTG	3 cut(s)	523, 752, 877
AoxI	GGCC	3 cut(s)	164, 277, 443
ApoI	RAATTY	2 cut(s)	238, 650
AsiGI	ACCGGT	1 cut(s)	1096
Asp700I	GAANNNNTTC	1 cut(s)	651
AspS9I	GGNCC	3 cut(s)	278, 443, 490
AsuHPI	GGTGA	1 cut(s)	928
AvaII	GGWCC	1 cut(s)	490
BaeGI	GKGCMC	1 cut(s)	536
BbvCI	CCTCAGC	1 cut(s)	447
BccI	CCATC	2 cut(s)	299, 913
BciVI	GTATCC	1 cut(s)	1138
BclI	TGATCA	2 cut(s)	387, 514
BcoDI	GTCTC	2 cut(s)	9, 1018
BfaI	CTAG	6 cut(s)	393, 537, 564, 684, 737, 857
BfmI	CTRYAG	2 cut(s)	39, 286
BfuAI	ACCTGC	1 cut(s)	885
BfuI	GTATCC	1 cut(s)	1138
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	3 cut(s)	278, 443, 490
BmiI	GGNNCC	1 cut(s)	542
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	869
BmuI	ACTGGG	1 cut(s)	538
BplI	GAGNNNNNCTC	4 cut(s)	319, 351, 1171, 1203
Bpu10I	CCTNAGC	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	1018
BsaJI	CCNNGG	1 cut(s)	659
BsaWI	WCCGGW	2 cut(s)	1076, 1096
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 798, 828
Bsc4I	CCNNNNNNNGG	3 cut(s)	529, 665, 1141
Bse118I	RCCGGY	1 cut(s)	1096
Bse1I	ACTGG	1 cut(s)	533
BseDI	CCNNGG	1 cut(s)	659
BseGI	GGATG	2 cut(s)	434, 973
BseLI	CCNNNNNNNGG	3 cut(s)	529, 665, 1141
BseMII	CTCAG	3 cut(s)	461, 727, 1013
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	783
BseSI	GKGCMC	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	890
BshFI	GGCC	3 cut(s)	166, 279, 445
BshTI	ACCGGT	1 cut(s)	1096
BsiSI	CCGG	2 cut(s)	1077, 1097
BslI	CCNNNNNNNGG	3 cut(s)	529, 665, 1141
BsmAI	GTCTC	2 cut(s)	9, 1018
BsmI	GAATGC	1 cut(s)	992
BsnI	GGCC	3 cut(s)	166, 279, 445
Bso31I	GGTCTC	1 cut(s)	1018
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	9 cut(s)	117, 132, 387, 514, 700, 847, 908, 922, 931
BspACI	CCGC	3 cut(s)	163, 728, 788
BspANI	GGCC	3 cut(s)	166, 279, 445
BspCNI	CTCAG	3 cut(s)	460, 726, 1014
BspFNI	CGCG	1 cut(s)	890
BspLI	GGNNCC	1 cut(s)	542
BspMI	ACCTGC	1 cut(s)	885
BspPI	GGATC	2 cut(s)	926, 930
BspTNI	GGTCTC	1 cut(s)	1018
BsrFI	RCCGGY	1 cut(s)	1096
BsrI	ACTGG	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	1096
BssECI	CCNNGG	1 cut(s)	659
BssMI	GATC	9 cut(s)	117, 132, 387, 514, 700, 847, 908, 922, 931
BssT1I	CCWWGG	1 cut(s)	659
Bst4CI	ACNGT	2 cut(s)	36, 494
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	877
BstC8I	GCNNGC	3 cut(s)	628, 681, 978
BstDEI	CTNAG	7 cut(s)	27, 188, 447, 599, 713, 851, 1022
BstF5I	GGATG	2 cut(s)	434, 973
BstFNI	CGCG	1 cut(s)	890
BstKTI	GATC	9 cut(s)	120, 135, 390, 517, 703, 850, 911, 925, 934
BstMAI	GTCTC	2 cut(s)	9, 1018
BstMBI	GATC	9 cut(s)	117, 132, 387, 514, 700, 847, 908, 922, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	877
BstNSI	RCATGY	1 cut(s)	1062
BstSFI	CTRYAG	2 cut(s)	39, 286
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	1 cut(s)	890
BstX2I	RGATCY	2 cut(s)	847, 922
BstYI	RGATCY	2 cut(s)	847, 922
BsuI	GTATCC	1 cut(s)	1138
BsuRI	GGCC	3 cut(s)	166, 279, 445
BtsCI	GGATG	2 cut(s)	434, 973
BveI	ACCTGC	1 cut(s)	885
Cac8I	GCNNGC	3 cut(s)	628, 681, 978
CaiI	CAGNNNCTG	3 cut(s)	523, 752, 877
Cfr10I	RCCGGY	1 cut(s)	1096
Cfr13I	GGNCC	3 cut(s)	278, 443, 490
CseI	GACGC	3 cut(s)	179, 385, 1125
Csp6I	GTAC	2 cut(s)	717, 874
CspAI	ACCGGT	1 cut(s)	1096
CspCI	CAANNNNNGTGG	2 cut(s)	969, 1004
CviAII	CATG	5 cut(s)	472, 584, 1013, 1033, 1059
CviQI	GTAC	2 cut(s)	717, 874
DdeI	CTNAG	7 cut(s)	27, 188, 447, 599, 713, 851, 1022
DpnI	GATC	9 cut(s)	119, 134, 389, 516, 702, 849, 910, 924, 933
DpnII	GATC	9 cut(s)	117, 132, 387, 514, 700, 847, 908, 922, 931
EaeI	YGGCCR	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	803
Eco130I	CCWWGG	1 cut(s)	659
Eco31I	GGTCTC	1 cut(s)	1018
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	717, 989
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	659
ErhI	CCWWGG	1 cut(s)	659
FaeI	CATG	5 cut(s)	475, 587, 1016, 1036, 1062
FatI	CATG	5 cut(s)	471, 583, 1012, 1032, 1058
FauI	CCCGC	1 cut(s)	721
FbaI	TGATCA	2 cut(s)	387, 514
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	2 cut(s)	441, 980
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	6 cut(s)	393, 537, 564, 684, 737, 857
GluI	GCNGC	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	166, 279, 445
HapII	CCGG	2 cut(s)	1077, 1097
HgaI	GACGC	3 cut(s)	179, 385, 1125
Hin1II	CATG	5 cut(s)	475, 587, 1016, 1036, 1062
HincII	GTYRAC	1 cut(s)	1056
HindII	GTYRAC	1 cut(s)	1056
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	7 cut(s)	153, 183, 273, 453, 558, 590, 1184
HpaI	GTTAAC	1 cut(s)	1056
HpaII	CCGG	2 cut(s)	1077, 1097
HphI	GGTGA	1 cut(s)	928
Hpy166II	GTNNAC	2 cut(s)	39, 1056
Hpy188I	TCNGA	9 cut(s)	111, 158, 781, 865, 1023, 1039, 1071, 1156, 1179
Hpy188III	TCNNGA	5 cut(s)	136, 338, 523, 544, 641
Hpy8I	GTNNAC	2 cut(s)	39, 1056
HpyAV	CCTTC	4 cut(s)	220, 944, 1013, 1176
HpyCH4III	ACNGT	2 cut(s)	36, 494
HpyCH4V	TGCA	6 cut(s)	374, 871, 943, 976, 1016, 1062
HpyF10VI	GCNNNNNNNGC	1 cut(s)	877
HpyF3I	CTNAG	7 cut(s)	27, 188, 447, 599, 713, 851, 1022
Hsp92II	CATG	5 cut(s)	475, 587, 1016, 1036, 1062
Ksp22I	TGATCA	2 cut(s)	387, 514
KspAI	GTTAAC	1 cut(s)	1056
Kzo9I	GATC	9 cut(s)	117, 132, 387, 514, 700, 847, 908, 922, 931
LweI	GCATC	1 cut(s)	869
MaeI	CTAG	6 cut(s)	393, 537, 564, 684, 737, 857
MaeIII	GTNAC	2 cut(s)	30, 570
MalI	GATC	9 cut(s)	119, 134, 389, 516, 702, 849, 910, 924, 933
MboI	GATC	9 cut(s)	117, 132, 387, 514, 700, 847, 908, 922, 931
MboII	GAAGA	5 cut(s)	140, 235, 629, 682, 710
MflI	RGATCY	2 cut(s)	847, 922
MhlI	GDGCHC	1 cut(s)	536
MluI	ACGCGT	1 cut(s)	888
MlyI	GAGTC	2 cut(s)	162, 447
MmeI	TCCRAC	3 cut(s)	406, 424, 535
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	4 cut(s)	299, 324, 1055, 1204
MslI	CAYNNNNRTG	1 cut(s)	997
MspI	CCGG	2 cut(s)	1077, 1097
Mva1269I	GAATGC	1 cut(s)	992
MvnI	CGCG	1 cut(s)	890
MwoI	GCNNNNNNNGC	1 cut(s)	877
NdeII	GATC	9 cut(s)	117, 132, 387, 514, 700, 847, 908, 922, 931
NlaIII	CATG	5 cut(s)	475, 587, 1016, 1036, 1062
NlaIV	GGNNCC	1 cut(s)	542
NmuCI	GTSAC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	1062
PctI	GAATGC	1 cut(s)	992
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	5 cut(s)	183, 273, 558, 590, 1184
PflMI	CCANNNNNTGG	1 cut(s)	665
PinAI	ACCGGT	1 cut(s)	1096
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	2 cut(s)	161, 447
PpsI	GAGTC	2 cut(s)	161, 447
PsiI	TTATAA	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	542
PspPI	GGNCC	3 cut(s)	278, 443, 490
PstNI	CAGNNNCTG	3 cut(s)	523, 752, 877
PsuI	RGATCY	2 cut(s)	847, 922
RsaI	GTAC	2 cut(s)	718, 875
RsaNI	GTAC	2 cut(s)	717, 874
RseI	CAYNNNNRTG	1 cut(s)	997
SaqAI	TTAA	4 cut(s)	299, 324, 1055, 1204
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	9 cut(s)	117, 132, 387, 514, 700, 847, 908, 922, 931
Sau96I	GGNCC	3 cut(s)	278, 443, 490
SchI	GAGTC	2 cut(s)	162, 447
SduI	GDGCHC	1 cut(s)	536
SfaNI	GCATC	1 cut(s)	869
SfcI	CTRYAG	2 cut(s)	39, 286
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	997
SsiI	CCGC	3 cut(s)	163, 728, 788
SspMI	CTAG	6 cut(s)	393, 537, 564, 684, 737, 857
StyI	CCWWGG	1 cut(s)	659
TaaI	ACNGT	2 cut(s)	36, 494
TaqI	TCGA	1 cut(s)	642
TatI	WGTACW	1 cut(s)	716
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	5 cut(s)	183, 273, 558, 590, 1184
Tru1I	TTAA	4 cut(s)	299, 324, 1055, 1204
Tru9I	TTAA	4 cut(s)	299, 324, 1055, 1204
TseFI	GTSAC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	5 cut(s)	233, 480, 488, 660, 1143
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	2 cut(s)	238, 650
XceI	RCATGY	1 cut(s)	1062
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	6 cut(s)	393, 537, 564, 684, 737, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.