Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0017283

Physical Location & Seq

Genomic Coordinates Reverse (-)

18242490 .. 18245504

Gene Structure 3015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG087000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGACTCGCCGCTTACTGGAAGTGATGTCTCCAGCAGAACCCTCCAATTCTAAGTCACGGTCTACAGCCTTACTCTTTTTTCTTGGAGGGATAGTTATGCTCATCATTCTGCTTATAATTGTATTTATCTTTCGGAAAAAGATCAAACCAGAAGAGATCAAGAAGTTGGTAGCAAGAGTCAGAAAGCGGCCAGCATCGACAGACGCTTTTAGTGGAATCCTTAGAACAATAAGCTATTTTGACTTTGCAACATTGAAGAAGGCAACCAAGAATTTTCATCAGGGAAATCTACTTGGAAAAGGTGGATTCGGCCCTGTCTATAGGGGAAAATTAAGAGATGGGAGGTTGATTGCTGTTAAGAGGTTATCTCTTGATAAATCCCAACAAGGAGAAACAGAGTTTCTTGCAGAGGTAAGGTTGATCACTAGCGTCCAACACAGGAACTTGGTTCAACTTGTTGGATGTTGCTCACACGGGCCTCAGCGACTCCTTGCGTGGAAGTTATACGAGAGATCAAAGGTGATGGATCTGCTTGATCCAAAACTGCAACAAGAAGGATTTGAGGAAAAGGATGTTATGCAAGCAATCAATGTGGCATTCTTATGCCTTCAGCCTCATGCAAATCTGAGACCCCCCATGTCAGACATTGTAGCAATGTTAACATGCAAAGTTCAGATGACCGGAACACTACCTATAAAACCGGTCTTTTTGGACAGCAGACGCACCAAGAATGAAAACCTTTCGTGGGATACAATGTCCGACGTTTTCCCTTCTCCCATTCAGAGTGAATCTCCCTCATTACCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

269

Amino Acids

30.35

Weight (kDa)

9.95

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	92 - 195	9e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	94 - 184	1.3e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017283)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06650
malus_domestica	MD13G1236800.v1.1 MD16G1241900.v1.1
prunus_persica	Prupe.1G068800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398541
rosa_laevigata	RLG00000009346
rosa_roxburghii	Rroxscaffold_5G00343510
rosa_rugosa	Rorug04G0009200
rosa_samantha	Rh4AG087000 Rh4BG083700 Rh4CG095200 Rh4DG078600
rosa_wichuraiana	Rw4G007260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	2 cut(s)	10, 187
AclWI	GGATC	2 cut(s)	530, 534
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	16, 745
AgeI	ACCGGT	1 cut(s)	700
AgsI	TTSAA	2 cut(s)	256, 452
AluBI	AGCT	1 cut(s)	234
AluI	AGCT	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	33, 622
AlwI	GGATC	2 cut(s)	530, 534
AoxI	GGCC	3 cut(s)	188, 310, 476
ApoI	RAATTY	1 cut(s)	271
AsiGI	ACCGGT	1 cut(s)	700
AspS9I	GGNCC	2 cut(s)	311, 476
AsuHPI	GGTGA	1 cut(s)	532
BbvCI	CCTCAGC	1 cut(s)	480
BccI	CCATC	2 cut(s)	332, 517
BciVI	GTATCC	1 cut(s)	742
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	33, 622
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	2 cut(s)	63, 319
BfuI	GTATCC	1 cut(s)	742
BisI	GCNGC	2 cut(s)	10, 188
BlsI	GCNGC	2 cut(s)	11, 189
BmgT120I	GGNCC	2 cut(s)	311, 476
BmsI	GCATC	1 cut(s)	203
BplI	GAGNNNNNCTC	4 cut(s)	352, 384, 775, 807
BpmI	CTGGAG	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	622
BsaWI	WCCGGW	2 cut(s)	680, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 745
Bse118I	RCCGGY	1 cut(s)	700
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	467, 577
BseLI	CCNNNNNNNGG	2 cut(s)	16, 745
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	2 cut(s)	494, 617
BseNI	ACTGG	1 cut(s)	21
BshFI	GGCC	3 cut(s)	190, 312, 478
BshTI	ACCGGT	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	681, 701
BslI	CCNNNNNNNGG	2 cut(s)	16, 745
BsmAI	GTCTC	2 cut(s)	33, 622
BsmI	GAATGC	1 cut(s)	596
BsnI	GGCC	3 cut(s)	190, 312, 478
Bso31I	GGTCTC	1 cut(s)	622
Bsp143I	GATC	6 cut(s)	141, 156, 420, 512, 526, 535
BspACI	CCGC	2 cut(s)	10, 187
BspANI	GGCC	3 cut(s)	190, 312, 478
BspCNI	CTCAG	2 cut(s)	493, 618
BspPI	GGATC	2 cut(s)	530, 534
BspTNI	GGTCTC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	700
BssMI	GATC	6 cut(s)	141, 156, 420, 512, 526, 535
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	192, 582
BstDEI	CTNAG	4 cut(s)	51, 221, 480, 626
BstF5I	GGATG	2 cut(s)	467, 577
BstKTI	GATC	6 cut(s)	144, 159, 423, 515, 529, 538
BstMAI	GTCTC	2 cut(s)	33, 622
BstMBI	GATC	6 cut(s)	141, 156, 420, 512, 526, 535
BstNSI	RCATGY	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	63, 319
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	742
BsuRI	GGCC	3 cut(s)	190, 312, 478
BtsCI	GGATG	2 cut(s)	467, 577
Cac8I	GCNNGC	2 cut(s)	192, 582
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	2 cut(s)	311, 476
CseI	GACGC	3 cut(s)	212, 418, 729
CspAI	ACCGGT	1 cut(s)	700
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviAII	CATG	3 cut(s)	617, 637, 663
CviJI	RGCY	6 cut(s)	68, 190, 234, 312, 478, 613
CviKI_1	RGCY	6 cut(s)	68, 190, 234, 312, 478, 613
DdeI	CTNAG	4 cut(s)	51, 221, 480, 626
DpnI	GATC	6 cut(s)	143, 158, 422, 514, 528, 537
DpnII	GATC	6 cut(s)	141, 156, 420, 512, 526, 535
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	593
FaeI	CATG	3 cut(s)	620, 640, 666
FatI	CATG	3 cut(s)	616, 636, 662
FbaI	TGATCA	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	10, 188
FokI	GGATG	2 cut(s)	474, 584
Fsp4HI	GCNGC	2 cut(s)	10, 188
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	2 cut(s)	10, 188
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	190, 312, 478
HapII	CCGG	2 cut(s)	681, 701
HgaI	GACGC	3 cut(s)	212, 418, 729
Hin1II	CATG	3 cut(s)	620, 640, 666
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HinfI	GANTC	6 cut(s)	4, 177, 216, 306, 486, 788
HpaI	GTTAAC	1 cut(s)	660
HpaII	CCGG	2 cut(s)	681, 701
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	2 cut(s)	63, 660
Hpy188I	TCNGA	7 cut(s)	135, 182, 627, 643, 675, 760, 783
Hpy188III	TCNNGA	2 cut(s)	160, 371
Hpy8I	GTNNAC	2 cut(s)	63, 660
Hpy99I	CGWCG	1 cut(s)	764
HpyAV	CCTTC	4 cut(s)	253, 548, 617, 780
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	6 cut(s)	248, 407, 547, 580, 620, 666
HpyF3I	CTNAG	4 cut(s)	51, 221, 480, 626
HpySE526I	ACGT	1 cut(s)	762
Hsp92II	CATG	3 cut(s)	620, 640, 666
Ksp22I	TGATCA	1 cut(s)	420
KspAI	GTTAAC	1 cut(s)	660
Kzo9I	GATC	6 cut(s)	141, 156, 420, 512, 526, 535
LpnPI	CCDG	9 cut(s)	2, 45, 162, 204, 266, 327, 424, 694, 714
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	6 cut(s)	143, 158, 422, 514, 528, 537
MboI	GATC	6 cut(s)	141, 156, 420, 512, 526, 535
MboII	GAAGA	2 cut(s)	164, 268
MflI	RGATCY	1 cut(s)	526
MluCI	AATT	5 cut(s)	46, 117, 271, 329, 805
MlyI	GAGTC	2 cut(s)	186, 480
MmeI	TCCRAC	3 cut(s)	439, 457, 783
MnlI	CCTC	9 cut(s)	52, 80, 336, 354, 403, 489, 556, 624, 805
MseI	TTAA	4 cut(s)	332, 357, 659, 808
MslI	CAYNNNNRTG	1 cut(s)	601
MspI	CCGG	2 cut(s)	681, 701
Mva1269I	GAATGC	1 cut(s)	596
NdeII	GATC	6 cut(s)	141, 156, 420, 512, 526, 535
NlaIII	CATG	3 cut(s)	620, 640, 666
NmuCI	GTSAC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	666
PctI	GAATGC	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	216, 306, 788
PinAI	ACCGGT	1 cut(s)	700
PkrI	GCNGC	2 cut(s)	11, 189
PleI	GAGTC	2 cut(s)	185, 480
PpsI	GAGTC	2 cut(s)	185, 480
PsiI	TTATAA	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	311, 476
PsuI	RGATCY	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	601
SaqAI	TTAA	4 cut(s)	332, 357, 659, 808
SatI	GCNGC	2 cut(s)	10, 188
Sau3AI	GATC	6 cut(s)	141, 156, 420, 512, 526, 535
Sau96I	GGNCC	2 cut(s)	311, 476
SchI	GAGTC	2 cut(s)	186, 480
SfaNI	GCATC	1 cut(s)	203
SfcI	CTRYAG	2 cut(s)	63, 319
SmiMI	CAYNNNNRTG	1 cut(s)	601
Sse9I	AATT	5 cut(s)	46, 117, 271, 329, 805
SsiI	CCGC	2 cut(s)	10, 187
SspMI	CTAG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	1 cut(s)	197
TasI	AATT	5 cut(s)	46, 117, 271, 329, 805
TauI	GCSGC	2 cut(s)	12, 190
TfiI	GAWTC	3 cut(s)	216, 306, 788
Tru1I	TTAA	4 cut(s)	332, 357, 659, 808
Tru9I	TTAA	4 cut(s)	332, 357, 659, 808
TseFI	GTSAC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	2 cut(s)	266, 747
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	666
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.