Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0017283

Physical Location & Seq

Genomic Coordinates Reverse (-)

15207860 .. 15210873

Gene Structure 3014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGACTCGCCGCTTACTGGAAGTGTTGTCTCCAGCAGAACCCTCCAATTCTAAGTCACGGTCTACAGCCTTACTCTTTTTTCTTGGAGGGATAGTTATGCTCATCATTCTGCTTATAATTGTATTTATCTTTCGGAAAAAGATCAAACCAGAAGAGATCAAGAAGTTGGTAGCAAGAGTCAGAAAGCGGCCAGCATCGACAGACGCTTTTAGTGGAATCCTTAGAACAATAAGCTATTTTGACTTCGCAACATTGAAGAAGGCAACCAAGAATTTTCATCAGGGAAATCTACTTGGAAAAGGTGGATTCGGCCCTGTCTATAGGGGAAAATTAAGAGATGGGAGGTTGATTGCTGTTAAGAGGTTATCTCTTGATAAATCCCAACAAGGAGAAACAGAGTTTCTTGCAGAGGTAAGGTTGATCACTAGCGTCCAACACAGGAACTTGGTTCAACTTGTTGGATGTTGCTCACACGGGCCTCAGCGACTCCTTGTATATGAATACATGAAAAACAAGAGCTTGGACCGTATAATATATGGAAAAAGTGATCAGTTCCTGAACTGGGGCACTAGGTTCCAGATAATTGTTGGAATCGCTAGAGGGTTACAATATCTACATGAGGATTCCCCCTTAAGAATTATACACAGAGATATCAAGGCGAGCAACATTCTTCTCGATGAAAAATTTCAACCAAGGATTGGAGATTTTGGGCTGGCTAGGTTCTTCCCTGAAGATCAAGCTTATCTCAGTACAACATTTGCGGGAACTCTAGGATATACAGCACCTGAATATGCTATTAGAGGAGAATTGTCCGAAAAGGCGGATATATATAGTTTTGGAGTTCTTGTGCTTGAAATAATTAGTGGCAGGAAAAACACAGATCTTAGTCTAGCATCAGAAATGCAGTACCTGCCTGAATACGCGTGGAAGTTATACGAGAGATCAAAGGTGATGGATCTGCTTGATCCAAAACTGCAACAAGAAGGATTTGAGGAAAAGGATGTTATGCAAGCAATCAATGTGGCATTCTTATGCCTTCAGCCTCATGCAAATCTGAGACCCCCCATGTCAGACATTGTAGCAATGTTAACATGCAAAGTTCAGATGACCGGAACACTACCTATAAAACCGGTCTTTTTGGACAGCAGACGCACCAAGAATGAAAACCTTTCGTGGGATACAATGTCCGATGTTTTCCCTTCTCCCATTCAGAGTGAATCTCCCTCATTACCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

412

Amino Acids

46.74

Weight (kDa)

9.45

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	92 - 294	1.9e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	94 - 362	8e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017283)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06650
malus_domestica	MD13G1236800.v1.1 MD16G1241900.v1.1
prunus_persica	Prupe.1G068800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398541
rosa_laevigata	RLG00000009346
rosa_roxburghii	Rroxscaffold_5G00343510
rosa_rugosa	Rorug04G0009200
rosa_samantha	Rh4AG087000 Rh4BG083700 Rh4CG095200 Rh4DG078600
rosa_wichuraiana	Rw4G007260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	918
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	62
AccII	CGCG	1 cut(s)	923
AciI	CCGC	4 cut(s)	10, 187, 761, 821
AclWI	GGATC	2 cut(s)	959, 963
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	271, 683
AcuI	CTGAAG	2 cut(s)	750, 1022
AfaI	GTAC	2 cut(s)	751, 908
AfiI	CCNNNNNNNGG	4 cut(s)	16, 562, 698, 1174
AflII	CTTAAG	1 cut(s)	631
AflIII	ACRYGT	1 cut(s)	921
AgeI	ACCGGT	1 cut(s)	1129
AgsI	TTSAA	4 cut(s)	256, 452, 689, 854
AluBI	AGCT	3 cut(s)	234, 519, 740
AluI	AGCT	3 cut(s)	234, 519, 740
Alw26I	GTCTC	2 cut(s)	33, 1051
AlwI	GGATC	2 cut(s)	959, 963
AlwNI	CAGNNNCTG	3 cut(s)	556, 785, 910
AoxI	GGCC	3 cut(s)	188, 310, 476
ApoI	RAATTY	2 cut(s)	271, 683
AsiGI	ACCGGT	1 cut(s)	1129
Asp700I	GAANNNNTTC	1 cut(s)	684
AspS9I	GGNCC	3 cut(s)	311, 476, 523
AsuHPI	GGTGA	1 cut(s)	961
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	480
BccI	CCATC	2 cut(s)	332, 946
BciVI	GTATCC	1 cut(s)	1171
BclI	TGATCA	2 cut(s)	420, 547
BcoDI	GTCTC	2 cut(s)	33, 1051
BfaI	CTAG	6 cut(s)	426, 570, 597, 717, 770, 890
BfmI	CTRYAG	2 cut(s)	63, 319
BfrI	CTTAAG	1 cut(s)	631
BfuAI	ACCTGC	1 cut(s)	918
BfuI	GTATCC	1 cut(s)	1171
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	2 cut(s)	10, 188
BlsI	GCNGC	2 cut(s)	11, 189
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	3 cut(s)	311, 476, 523
BmiI	GGNNCC	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	2 cut(s)	203, 902
BmuI	ACTGGG	1 cut(s)	571
BplI	GAGNNNNNCTC	4 cut(s)	352, 384, 1204, 1236
BpmI	CTGGAG	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	1051
BsaJI	CCNNGG	1 cut(s)	692
BsaWI	WCCGGW	2 cut(s)	1109, 1129
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 831, 861
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 562, 698, 1174
Bse118I	RCCGGY	1 cut(s)	1129
Bse1I	ACTGG	2 cut(s)	21, 566
Bse3DI	GCAATG	1 cut(s)	1089
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	2 cut(s)	467, 1006
BseLI	CCNNNNNNNGG	4 cut(s)	16, 562, 698, 1174
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	3 cut(s)	494, 760, 1046
BseNI	ACTGG	2 cut(s)	21, 566
BseRI	GAGGAG	1 cut(s)	816
BseSI	GKGCMC	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	923
BshFI	GGCC	3 cut(s)	190, 312, 478
BshTI	ACCGGT	1 cut(s)	1129
BsiSI	CCGG	2 cut(s)	1110, 1130
BslI	CCNNNNNNNGG	4 cut(s)	16, 562, 698, 1174
BsmAI	GTCTC	2 cut(s)	33, 1051
BsmI	GAATGC	1 cut(s)	1025
BsnI	GGCC	3 cut(s)	190, 312, 478
Bso31I	GGTCTC	1 cut(s)	1051
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp143I	GATC	9 cut(s)	141, 156, 420, 547, 733, 880, 941, 955, 964
BspACI	CCGC	4 cut(s)	10, 187, 761, 821
BspANI	GGCC	3 cut(s)	190, 312, 478
BspCNI	CTCAG	3 cut(s)	493, 759, 1047
BspFNI	CGCG	1 cut(s)	923
BspLI	GGNNCC	1 cut(s)	575
BspMI	ACCTGC	1 cut(s)	918
BspPI	GGATC	2 cut(s)	959, 963
BspTI	CTTAAG	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	1051
BsrDI	GCAATG	1 cut(s)	1089
BsrFI	RCCGGY	1 cut(s)	1129
BsrI	ACTGG	2 cut(s)	21, 566
BssAI	RCCGGY	1 cut(s)	1129
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	9 cut(s)	141, 156, 420, 547, 733, 880, 941, 955, 964
BssT1I	CCWWGG	1 cut(s)	692
Bst4CI	ACNGT	2 cut(s)	60, 527
Bst6I	CTCTTC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	631
BstAPI	GCANNNNNTGC	1 cut(s)	910
BstC8I	GCNNGC	4 cut(s)	192, 661, 714, 1011
BstDEI	CTNAG	6 cut(s)	51, 221, 480, 746, 884, 1055
BstF5I	GGATG	2 cut(s)	467, 1006
BstFNI	CGCG	1 cut(s)	923
BstKTI	GATC	9 cut(s)	144, 159, 423, 550, 736, 883, 944, 958, 967
BstMAI	GTCTC	2 cut(s)	33, 1051
BstMBI	GATC	9 cut(s)	141, 156, 420, 547, 733, 880, 941, 955, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	910
BstNSI	RCATGY	1 cut(s)	1095
BstSFI	CTRYAG	2 cut(s)	63, 319
BstSLI	GKGCMC	1 cut(s)	569
BstUI	CGCG	1 cut(s)	923
BstX2I	RGATCY	2 cut(s)	880, 955
BstYI	RGATCY	2 cut(s)	880, 955
BsuI	GTATCC	1 cut(s)	1171
BsuRI	GGCC	3 cut(s)	190, 312, 478
BtsCI	GGATG	2 cut(s)	467, 1006
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	4 cut(s)	192, 661, 714, 1011
CaiI	CAGNNNCTG	3 cut(s)	556, 785, 910
Cfr10I	RCCGGY	1 cut(s)	1129
Cfr13I	GGNCC	3 cut(s)	311, 476, 523
CseI	GACGC	3 cut(s)	212, 418, 1158
Csp6I	GTAC	2 cut(s)	750, 907
CspAI	ACCGGT	1 cut(s)	1129
CspCI	CAANNNNNGTGG	2 cut(s)	1002, 1037
CviAII	CATG	5 cut(s)	505, 617, 1046, 1066, 1092
CviQI	GTAC	2 cut(s)	750, 907
DdeI	CTNAG	6 cut(s)	51, 221, 480, 746, 884, 1055
DpnI	GATC	9 cut(s)	143, 158, 422, 549, 735, 882, 943, 957, 966
DpnII	GATC	9 cut(s)	141, 156, 420, 547, 733, 880, 941, 955, 964
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	836
Eco130I	CCWWGG	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	1051
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	2 cut(s)	750, 1022
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	692
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	5 cut(s)	508, 620, 1049, 1069, 1095
FatI	CATG	5 cut(s)	504, 616, 1045, 1065, 1091
FauI	CCCGC	1 cut(s)	754
FbaI	TGATCA	2 cut(s)	420, 547
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	10, 188
FokI	GGATG	2 cut(s)	474, 1013
Fsp4HI	GCNGC	2 cut(s)	10, 188
FspBI	CTAG	6 cut(s)	426, 570, 597, 717, 770, 890
GluI	GCNGC	2 cut(s)	10, 188
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	190, 312, 478
HapII	CCGG	2 cut(s)	1110, 1130
HgaI	GACGC	3 cut(s)	212, 418, 1158
Hin1II	CATG	5 cut(s)	508, 620, 1049, 1069, 1095
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HindIII	AAGCTT	1 cut(s)	738
HinfI	GANTC	8 cut(s)	4, 177, 216, 306, 486, 591, 623, 1217
HpaI	GTTAAC	1 cut(s)	1089
HpaII	CCGG	2 cut(s)	1110, 1130
HphI	GGTGA	1 cut(s)	961
Hpy166II	GTNNAC	2 cut(s)	63, 1089
Hpy188I	TCNGA	9 cut(s)	135, 182, 814, 898, 1056, 1072, 1104, 1189, 1212
Hpy188III	TCNNGA	5 cut(s)	160, 371, 556, 577, 674
Hpy8I	GTNNAC	2 cut(s)	63, 1089
HpyAV	CCTTC	4 cut(s)	253, 977, 1046, 1209
HpyCH4III	ACNGT	2 cut(s)	60, 527
HpyCH4V	TGCA	6 cut(s)	407, 904, 976, 1009, 1049, 1095
HpyF10VI	GCNNNNNNNGC	1 cut(s)	910
HpyF3I	CTNAG	6 cut(s)	51, 221, 480, 746, 884, 1055
Hsp92II	CATG	5 cut(s)	508, 620, 1049, 1069, 1095
Ksp22I	TGATCA	2 cut(s)	420, 547
KspAI	GTTAAC	1 cut(s)	1089
Kzo9I	GATC	9 cut(s)	141, 156, 420, 547, 733, 880, 941, 955, 964
LweI	GCATC	2 cut(s)	203, 902
MaeI	CTAG	6 cut(s)	426, 570, 597, 717, 770, 890
MaeIII	GTNAC	2 cut(s)	54, 603
MalI	GATC	9 cut(s)	143, 158, 422, 549, 735, 882, 943, 957, 966
MboI	GATC	9 cut(s)	141, 156, 420, 547, 733, 880, 941, 955, 964
MboII	GAAGA	5 cut(s)	164, 268, 662, 715, 743
MflI	RGATCY	2 cut(s)	880, 955
MhlI	GDGCHC	1 cut(s)	569
MluI	ACGCGT	1 cut(s)	921
MlyI	GAGTC	2 cut(s)	186, 480
MmeI	TCCRAC	3 cut(s)	439, 457, 568
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	5 cut(s)	332, 357, 632, 1088, 1237
MslI	CAYNNNNRTG	1 cut(s)	1030
MspCI	CTTAAG	1 cut(s)	631
MspI	CCGG	2 cut(s)	1110, 1130
Mva1269I	GAATGC	1 cut(s)	1025
MvnI	CGCG	1 cut(s)	923
MwoI	GCNNNNNNNGC	1 cut(s)	910
NdeII	GATC	9 cut(s)	141, 156, 420, 547, 733, 880, 941, 955, 964
NlaIII	CATG	5 cut(s)	508, 620, 1049, 1069, 1095
NlaIV	GGNNCC	1 cut(s)	575
NmuCI	GTSAC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	1095
PctI	GAATGC	1 cut(s)	1025
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	5 cut(s)	216, 306, 591, 623, 1217
PflMI	CCANNNNNTGG	1 cut(s)	698
PinAI	ACCGGT	1 cut(s)	1129
PkrI	GCNGC	2 cut(s)	11, 189
PleI	GAGTC	2 cut(s)	185, 480
PpsI	GAGTC	2 cut(s)	185, 480
PsiI	TTATAA	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	575
PspPI	GGNCC	3 cut(s)	311, 476, 523
PstNI	CAGNNNCTG	3 cut(s)	556, 785, 910
PsuI	RGATCY	2 cut(s)	880, 955
RsaI	GTAC	2 cut(s)	751, 908
RsaNI	GTAC	2 cut(s)	750, 907
RseI	CAYNNNNRTG	1 cut(s)	1030
SaqAI	TTAA	5 cut(s)	332, 357, 632, 1088, 1237
SatI	GCNGC	2 cut(s)	10, 188
Sau3AI	GATC	9 cut(s)	141, 156, 420, 547, 733, 880, 941, 955, 964
Sau96I	GGNCC	3 cut(s)	311, 476, 523
SchI	GAGTC	2 cut(s)	186, 480
SduI	GDGCHC	1 cut(s)	569
SfaNI	GCATC	2 cut(s)	203, 902
SfcI	CTRYAG	2 cut(s)	63, 319
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	1030
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
SsiI	CCGC	4 cut(s)	10, 187, 761, 821
SspMI	CTAG	6 cut(s)	426, 570, 597, 717, 770, 890
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	2 cut(s)	60, 527
TaqI	TCGA	2 cut(s)	197, 675
TatI	WGTACW	1 cut(s)	749
TauI	GCSGC	2 cut(s)	12, 190
TfiI	GAWTC	5 cut(s)	216, 306, 591, 623, 1217
Tru1I	TTAA	5 cut(s)	332, 357, 632, 1088, 1237
Tru9I	TTAA	5 cut(s)	332, 357, 632, 1088, 1237
TseFI	GTSAC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	5 cut(s)	266, 513, 521, 693, 1176
Van91I	CCANNNNNTGG	1 cut(s)	698
Vha464I	CTTAAG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	2 cut(s)	271, 683
XceI	RCATGY	1 cut(s)	1095
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	6 cut(s)	426, 570, 597, 717, 770, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.