Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0017283

Physical Location & Seq

Genomic Coordinates Reverse (-)

14518387 .. 14521391

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG083700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACTCGCCGCTTACTGGAAGTGATGTCTCCAGCAGAACCCTCCAATTCGAAGTCACGGTCTACAGCCTTACTCTTTTTTCTTGGAGGGATAGTTATGCTCATCATTCTGCTTATAATTGTATTTATCTTTCGGAAAAAGATCAAACCAGAAGAGATCAAGAAGTTGGTAGCAAGAGTCAGAAAGCGGCCAGCATCGACAGACGCTTTTAGTGGAATCCTTAGAACAATAAGCTATTTTGACTTCGCAACATTGAAGAAGGCAACCAAGAATTTTCATCAGGGAAATCTACTTGGAAAAGGTGGATTCGGCCCTGTCTATAGGGCGTGGAAGTTATATGAGAGATCAAAGGTGATGGATCTGCTTGATCCAAAACTGCAACAAGAAGGATTTGAGGAAAAGGATGTTATGCAAGCAATCAATGTGGCATTCTTATGCCTTCAGCCTCATGCAAATCTGAGACCCCCCATGTCAGACATTGTAGCAATGTTAACATGCAAAGTTCAGATGACCGGAACACTACCTATAAAACCGGCCTTTTTGGACAGAAGACGCACCAAGAATGAAAACCTTTCGTGGGATACAATGTCCGATGTTTTCCCTTCTCCCATTCAGAGTGAATCTCCCTCATTACCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

213

Amino Acids

24.14

Weight (kDa)

9.96

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017283)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06650
malus_domestica	MD13G1236800.v1.1 MD16G1241900.v1.1
prunus_persica	Prupe.1G068800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398541
rosa_laevigata	RLG00000009346
rosa_roxburghii	Rroxscaffold_5G00343510
rosa_rugosa	Rorug04G0009200
rosa_samantha	Rh4AG087000 Rh4BG083700 Rh4CG095200 Rh4DG078600
rosa_wichuraiana	Rw4G007260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	2 cut(s)	10, 187
AclWI	GGATC	2 cut(s)	362, 366
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	16, 577
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	1 cut(s)	234
AluI	AGCT	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	33, 454
AlwI	GGATC	2 cut(s)	362, 366
AoxI	GGCC	3 cut(s)	188, 310, 534
ApoI	RAATTY	1 cut(s)	271
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	556
BccI	CCATC	1 cut(s)	349
BciVI	GTATCC	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	33, 454
BfmI	CTRYAG	2 cut(s)	63, 319
BfuI	GTATCC	1 cut(s)	574
BisI	GCNGC	2 cut(s)	10, 188
BlsI	GCNGC	2 cut(s)	11, 189
BmgT120I	GGNCC	1 cut(s)	311
BmsI	GCATC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	556
BplI	GAGNNNNNCTC	2 cut(s)	607, 639
BpmI	CTGGAG	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	454
BsaWI	WCCGGW	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 577
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	16, 577
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	21
BshFI	GGCC	3 cut(s)	190, 312, 536
BsiSI	CCGG	2 cut(s)	513, 533
BslI	CCNNNNNNNGG	2 cut(s)	16, 577
BsmAI	GTCTC	2 cut(s)	33, 454
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	190, 312, 536
Bso31I	GGTCTC	1 cut(s)	454
Bsp119I	TTCGAA	1 cut(s)	50
Bsp143I	GATC	5 cut(s)	141, 156, 344, 358, 367
BspACI	CCGC	2 cut(s)	10, 187
BspANI	GGCC	3 cut(s)	190, 312, 536
BspCNI	CTCAG	1 cut(s)	450
BspPI	GGATC	2 cut(s)	362, 366
BspT104I	TTCGAA	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	532
BssMI	GATC	5 cut(s)	141, 156, 344, 358, 367
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	192, 414
BstDEI	CTNAG	2 cut(s)	221, 458
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	5 cut(s)	144, 159, 347, 361, 370
BstMAI	GTCTC	2 cut(s)	33, 454
BstMBI	GATC	5 cut(s)	141, 156, 344, 358, 367
BstNSI	RCATGY	1 cut(s)	498
BstSFI	CTRYAG	2 cut(s)	63, 319
BstV2I	GAAGAC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	190, 312, 536
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	192, 414
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	2 cut(s)	212, 561
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviAII	CATG	3 cut(s)	449, 469, 495
CviJI	RGCY	6 cut(s)	68, 190, 234, 312, 445, 536
CviKI_1	RGCY	6 cut(s)	68, 190, 234, 312, 445, 536
DdeI	CTNAG	2 cut(s)	221, 458
DpnI	GATC	5 cut(s)	143, 158, 346, 360, 369
DpnII	GATC	5 cut(s)	141, 156, 344, 358, 367
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	425
FaeI	CATG	3 cut(s)	452, 472, 498
FatI	CATG	3 cut(s)	448, 468, 494
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	10, 188
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	10, 188
GluI	GCNGC	2 cut(s)	10, 188
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	190, 312, 536
HapII	CCGG	2 cut(s)	513, 533
HgaI	GACGC	2 cut(s)	212, 561
Hin1II	CATG	3 cut(s)	452, 472, 498
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	5 cut(s)	4, 177, 216, 306, 620
HpaI	GTTAAC	1 cut(s)	492
HpaII	CCGG	2 cut(s)	513, 533
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	63, 492
Hpy188I	TCNGA	7 cut(s)	135, 182, 459, 475, 507, 592, 615
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	2 cut(s)	63, 492
HpyAV	CCTTC	4 cut(s)	253, 380, 449, 612
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	379, 412, 452, 498
HpyF3I	CTNAG	2 cut(s)	221, 458
Hsp92II	CATG	3 cut(s)	452, 472, 498
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	5 cut(s)	141, 156, 344, 358, 367
LpnPI	CCDG	8 cut(s)	2, 45, 162, 204, 266, 327, 526, 546
LweI	GCATC	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	5 cut(s)	143, 158, 346, 360, 369
MboI	GATC	5 cut(s)	141, 156, 344, 358, 367
MboII	GAAGA	3 cut(s)	164, 268, 561
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	4 cut(s)	46, 117, 271, 637
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	52, 80, 388, 456, 637
MseI	TTAA	2 cut(s)	491, 640
MslI	CAYNNNNRTG	1 cut(s)	433
MspI	CCGG	2 cut(s)	513, 533
Mva1269I	GAATGC	1 cut(s)	428
NdeII	GATC	5 cut(s)	141, 156, 344, 358, 367
NlaIII	CATG	3 cut(s)	452, 472, 498
NmuCI	GTSAC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	498
NspV	TTCGAA	1 cut(s)	50
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	216, 306, 620
PkrI	GCNGC	2 cut(s)	11, 189
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PsiI	TTATAA	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	491, 640
SatI	GCNGC	2 cut(s)	10, 188
Sau3AI	GATC	5 cut(s)	141, 156, 344, 358, 367
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	186
SetI	ASST	6 cut(s)	236, 304, 354, 526, 573, 637
SfaNI	GCATC	1 cut(s)	203
SfcI	CTRYAG	2 cut(s)	63, 319
SfuI	TTCGAA	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	433
Sse9I	AATT	4 cut(s)	46, 117, 271, 637
SsiI	CCGC	2 cut(s)	10, 187
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	50, 197
TasI	AATT	4 cut(s)	46, 117, 271, 637
TauI	GCSGC	2 cut(s)	12, 190
TfiI	GAWTC	3 cut(s)	216, 306, 620
Tru1I	TTAA	2 cut(s)	491, 640
Tru9I	TTAA	2 cut(s)	491, 640
TseFI	GTSAC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	2 cut(s)	266, 579
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.