Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007034

Physical Location & Seq

Genomic Coordinates Forward (+)

7006706 .. 7014186

Gene Structure 7481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGGCGACTGAGAGTCCAATTAGAATGTCAGAAACTGGTGGAAACTGGGCTTCCCATAACAAGCCGGCAAAAATTGCACCATCATCTGCTAATATGACAGCAGATGAGTTGAAATTGCTTCTGAGAGACCATAGGTTTCATAGCAACAGAATAGATGTTGCCCCTAATCGAAGTGGAAGTGCACCCCCAAGTATGGAGGGTTCATTTTTGGCCCTCAATAATCTGTTATCCCAGCAGGACTCTATCATTACTGGAAGCTTGGCAAGTCTAACTAGTGTTATTGAAAGGTGTGAGTCTGAGGAACAATTGCGTTCTGATCCAGCTTATCTGGCCTATTACTGTGCCAATGTAAATCTGAATCCAAGGCTTCCTCCTCCCCTTATCTCATGGGAGAATCGTCGTCTGGCACGCCACATCGGTAGTTTCAGTCCAAACTTGGGACCGGTAGAAGACAGTGGTAATGGTTCATTGCATATGTCTCCAGGACTACTGCCTACACACCAGGAAGAGTCGGAGGATGATCAGACACCCCCACAGGCTTCTAATGATTGGGTAGATCAGAAAAGTTCTGGTGAAGATGCAGCTCAATTGAAAGGACAACAGAAAAATGAAGATTCTTGTGGATCTACTTCGCCTGTAGATAATCATTCTCCTACCTTAAGCAACGAGATACCTGGGGAGCTTAATCAGGGTGCTGTTTCGAATTCCTTGCAAAATCTCCCTATTAATAAGATGTCTCCAAGTGGGCCCACTGTAGATGAAGAACGTGCAGCTGATACAGTGCTTTCACTAAATGCTGAATCCTCATCCAGTGCTGTTGCAATTTCATCGTCTCATGTTTATACCAGGACCACAGGTGTTAATGATGCTGGTGTTACCCTTGTTGAATCTGGAATGAAGTCTCTCAATATAGCAAACATGCCAGACAATCAAAAGAATCAAATACAGTGGCCACATAGCTACCAGAATAATTCCATGCAATACCAGATACAGCAACAGCAAATCAATTTATGCCAGGTTCAAAATGCCACATCTCAGATAACTCCTCAAGGAGTTCACTGCACATATGTCGGCATGGATCACTATCTCTCTAATAACTCCAAGTTTGCTGCGGATGCACAGCCACTACTCCAGACATCAGGGTTTGCACATCCACTCTATGCAAATGCAGCAGCCTACACGAGTGGAACACATCCATATTATTCAAATTTTCAGGCACAGAGCTTTGTTTCTCCACAATATGTGGGCGGATATGCTTTAAGTTCCCCTGGTTTTTCTCCATATGTTGGTGGATATCATCCCCCAGGAGCTGCTCCTGTTGTTGTCGAGGGAACTGTGGCTTCAAGCTTTAATGCTCGACCATCTGTGGGAAGCATTTCACCTGGGGCTGATGTGCAACATATAAGCAAGTCATATGGGCAGCTTGGGTTTCCTCTGCAAACTTCATATCCTGATCCTATGTATATGCAATACTATCAACAGCCGTTTGTGGAGTCATATGGTGTTTCTGGCCAGTTTGCTCCTTTGGCATCTAGAGGTGGTCTTGACATGAACAGAGCTTCCAATCATGGTGCTAGTTTGGATGCACACAAAGTCCAACATCAGAGGACTGGTGGGCCGGGAAATTTGACCTCACAAAGAGGACCAGTAAGTGGCAGCTATTATGGAAGTCTACCAAATGCTGGTGTTTTGATGCAGTATCCAACCTCACCCTTAAATAGTCCTGTTCTGCCAACATCATCTATTAGTTCAGGAAGGAATCCTGGCTTATATCATGGATGGCCTGGGCACCGAGGCTTTGAGAGTCTTCATGACACCAAAATTTATAATTTTCTTGAGGAGTTGAAATCTGGCAAAGGCCGCAGATTTGAGCTATCTGATATCACAAGACATATTGTTGAATTTAGCACTGATCAACATGGGAGTCGATTTATCCAACAGAAGTTGGAAAACTGTAGTATTGAAGAGAAGACTTCTGTATTCAGGGAAGTTCTCCCACATGCTTGTCAATTAATGACTGATGTTTTTGGTAACTATGTGATTCAAAAGTTTTTTGAGTATGGAAGCCCTCAGCAAAGGAAGGATCTCGCCAATCAACTTTCAGGTCAAATTTTGCCTCTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCCCTTGATGTTATTGAGCTTGAACAGAAAGTAAGGCTTGTACATGAGTTGGATGGACATGTTATGAGATGTGTCCGTGACCAAAATGGAAACCATGTCATACAAAAGTGTATTGAGAGCATCCCAACTGAAAAGATTGTGTTTATAATTTCTGCTTTCCATGATCAAGTTGCAACTCTTTCAATGCATCCCTATGGTTGCCGTGTTATTCAGAGAGTTCTGGAGCATTGTACAAATGAGCTGCAATGCCAGTTTATAGTCAATGAGATATTGGAGTCTGTGCATGCTCTTGCTCAGGACCAGTATGGCAATTATGTCTCGCAGCATGTATTGGAGAGGGGAAAACCTCATGAAAGAAGCCGAATTATCAGCAAGTTGTCGGGTCATATTGTACAGCTGAGCCAGCACAAATTTGCATCCAATGTTGTTGAGAAATGTTTGGAGTATGGTGATGCAGCAGAACGAGAATTGTTGATTAAAGAGATTGTTGGCCCTAATGATGGAAATGATAACTTATTGATCATGATGAAGGACCAATTTGCTAATTATGTGGTCCAGAAGACTCTTGAAATCTGTACAGACAGTCAACGGACAATATTGATTAATCGCATAAGGGCTCATACTCATGCATTGAAGAAATACACTTATGGGAAACACATTGTTGCCCGATTTGAGCAGCTATTTGGAGAAGAAAATCAATCAGGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632 NABP PUF

Protein Analysis

956

Amino Acids

105.14

Weight (kDa)

6.09

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF	PF00806	387 - 421	6.3e-12	Pumilio-family RNA binding repeat
PUF	PF00806	423 - 456	2.4e-09	Pumilio-family RNA binding repeat
PUF	PF00806	459 - 492	1.1e-08	Pumilio-family RNA binding repeat
PUF	PF00806	531 - 566	1.9e-13	Pumilio-family RNA binding repeat
PUF	PF00806	569 - 601	5.3e-07	Pumilio-family RNA binding repeat
PUF	PF00806	604 - 637	2.8e-11	Pumilio-family RNA binding repeat
PUF	PF00806	650 - 679	1.5e-07	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25880 AT4G25880 AT4G25880 AT4G25880 AT4G25880
fragaria_vesca	FvH4_4g07600 FvH4_4g07600 FvH4_4g07600
malus_domestica	MD13G1245500.v1.1 MD16G1252800.v1.1
prunus_persica	Prupe.1G079300_v2.0.a1 Prupe.1G079300_v2.0.a1
pyrus_communis	pycom13g21640 pycom16g21410
rosa_chinensis	RchiOBHm_Chr4g0400221
rosa_laevigata	RLG00000009203
rosa_multiflora	Rmu_sc0004338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00345180
rosa_rugosa	Rorug04G0023900 Rorug04G0024000
rosa_samantha	Rh4AG098900 Rh4BG097200 Rh4CG108400 Rh4DG093900
rosa_wichuraiana	Rw4G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1827, 2303
AccB1I	GGYRCC	1 cut(s)	1788
AccB7I	CCANNNNNTGG	3 cut(s)	1286, 1652, 1682
AccI	GTMKAC	1 cut(s)	1672
AciI	CCGC	3 cut(s)	1112, 1248, 1861
AclWI	GGATC	6 cut(s)	311, 631, 1086, 1448, 2091, 2856
AcoI	YGGCCR	2 cut(s)	950, 1510
AcsI	RAATTY	7 cut(s)	703, 1207, 1624, 1821, 1901, 2109, 2567
AfaI	GTAC	4 cut(s)	2199, 2389, 2550, 2734
AfiI	CCNNNNNNNGG	7 cut(s)	193, 437, 1286, 1367, 1652, 1682, 2657
AflII	CTTAAG	1 cut(s)	658
AflIII	ACRYGT	1 cut(s)	2215
AgeI	ACCGGT	1 cut(s)	442
AhdI	GACNNNNNGTC	1 cut(s)	12
AhlI	ACTAGT	1 cut(s)	272
AloI	GAACNNNNNNTCC	2 cut(s)	1544, 1576
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	6 cut(s)	120, 483, 741, 837, 906, 2479
Alw44I	GTGCAC	1 cut(s)	180
AlwI	GGATC	6 cut(s)	311, 631, 1086, 1448, 2091, 2856
AlwNI	CAGNNNCTG	2 cut(s)	35, 1310
ApaI	GGGCCC	1 cut(s)	750
ApaLI	GTGCAC	1 cut(s)	180
ApoI	RAATTY	7 cut(s)	703, 1207, 1624, 1821, 1901, 2109, 2567
AseI	ATTAAT	3 cut(s)	726, 2012, 2760
AsiGI	ACCGGT	1 cut(s)	442
Asp700I	GAANNNNTTC	1 cut(s)	1375
AsuC2I	CCSGG	1 cut(s)	1620
AsuHPI	GGTGA	4 cut(s)	584, 1371, 1701, 2618
AsuII	TTCGAA	1 cut(s)	701
AvaII	GGWCC	6 cut(s)	440, 849, 1643, 2455, 2689, 2710
BaeGI	GKGCMC	3 cut(s)	184, 750, 1791
BalI	TGGCCA	2 cut(s)	952, 1512
BamHI	GGATCC	1 cut(s)	2861
BanI	GGYRCC	1 cut(s)	1788
BanII	GRGCYC	2 cut(s)	750, 2776
BauI	CACGAG	1 cut(s)	1180
BbsI	GAAGAC	4 cut(s)	456, 1799, 1976, 2723
Bbv12I	GWGCWC	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	2070
BccI	CCATC	5 cut(s)	88, 1369, 1773, 2204, 2651
BceAI	ACGGC	2 cut(s)	1468, 2343
BcgI	CGANNNNNNTGC	6 cut(s)	691, 725, 810, 844, 1051, 1085
BciVI	GTATCC	1 cut(s)	1710
BclI	TGATCA	4 cut(s)	520, 1912, 2320, 2676
BcnI	CCSGG	1 cut(s)	1620
BcoDI	GTCTC	6 cut(s)	120, 483, 741, 837, 906, 2479
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	3 cut(s)	273, 1533, 1575
BfmI	CTRYAG	4 cut(s)	636, 753, 1954, 2126
BfrI	CTTAAG	1 cut(s)	658
BfuI	GTATCC	1 cut(s)	1710
BlpI	GCTNAGC	1 cut(s)	2555
Bme18I	GGWCC	6 cut(s)	440, 849, 1643, 2455, 2689, 2710
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmiI	GGNNCC	4 cut(s)	441, 748, 1790, 2863
BmrI	ACTGGG	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	4 cut(s)	456, 1799, 1976, 2723
BpmI	CTGGAG	3 cut(s)	465, 1115, 2399
Bpu10I	CCTNAGC	2 cut(s)	2070, 2451
Bpu1102I	GCTNAGC	1 cut(s)	2555
Bpu14I	TTCGAA	1 cut(s)	701
BpuEI	CTTGAG	2 cut(s)	1032, 1856
BpuMI	CCSGG	1 cut(s)	1620
BsaBI	GATNNNNATC	1 cut(s)	1083
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	7 cut(s)	362, 674, 1267, 1303, 1382, 1784, 1792
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	7 cut(s)	193, 437, 1286, 1367, 1652, 1682, 2657
Bse118I	RCCGGY	2 cut(s)	64, 442
Bse1I	ACTGG	9 cut(s)	40, 50, 256, 810, 1513, 1615, 1646, 2407, 2458
Bse3DI	GCAATG	2 cut(s)	467, 2408
Bse8I	GATNNNNATC	1 cut(s)	1083
BseDI	CCNNGG	7 cut(s)	362, 674, 1267, 1303, 1382, 1784, 1792
BseJI	GATNNNNATC	1 cut(s)	1083
BseLI	CCNNNNNNNGG	7 cut(s)	193, 437, 1286, 1367, 1652, 1682, 2657
BseMI	GCAATG	2 cut(s)	467, 2408
BseMII	CTCAG	6 cut(s)	113, 288, 1049, 2084, 2465, 2546
BseNI	ACTGG	9 cut(s)	40, 50, 256, 810, 1513, 1615, 1646, 2407, 2458
BseRI	GAGGAG	3 cut(s)	363, 1035, 1853
BseSI	GKGCMC	3 cut(s)	184, 750, 1791
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	2 cut(s)	789, 1045
BshNI	GGYRCC	1 cut(s)	1788
BshTI	ACCGGT	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	3 cut(s)	65, 443, 1619
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	7 cut(s)	193, 437, 1286, 1367, 1652, 1682, 2657
BsmAI	GTCTC	6 cut(s)	120, 483, 741, 837, 906, 2479
BsmBI	CGTCTC	1 cut(s)	837
BsmFI	GGGAC	1 cut(s)	453
Bso31I	GGTCTC	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	701
Bsp120I	GGGCCC	1 cut(s)	746
Bsp1286I	GDGCHC	4 cut(s)	184, 750, 1791, 2776
Bsp1407I	TGTACA	4 cut(s)	2197, 2387, 2548, 2732
Bsp1720I	GCTNAGC	1 cut(s)	2555
BspACI	CCGC	3 cut(s)	1112, 1248, 1861
BspCNI	CTCAG	6 cut(s)	114, 289, 1048, 2083, 2464, 2547
BspHI	TCATGA	3 cut(s)	1810, 2506, 2679
BspLI	GGNNCC	4 cut(s)	441, 748, 1790, 2863
BspMAI	CTGCAG	1 cut(s)	2130
BspPI	GGATC	6 cut(s)	311, 631, 1086, 1448, 2091, 2856
BspT104I	TTCGAA	1 cut(s)	701
BspT107I	GGYRCC	1 cut(s)	1788
BspTI	CTTAAG	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	467, 2408
BsrFI	RCCGGY	2 cut(s)	64, 442
BsrGI	TGTACA	4 cut(s)	2197, 2387, 2548, 2732
BsrI	ACTGG	9 cut(s)	40, 50, 256, 810, 1513, 1615, 1646, 2407, 2458
BssAI	RCCGGY	2 cut(s)	64, 442
BssECI	CCNNGG	7 cut(s)	362, 674, 1267, 1303, 1382, 1784, 1792
BssSI	CACGAG	1 cut(s)	1180
BssT1I	CCWWGG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	1180
Bst4CI	ACNGT	8 cut(s)	341, 455, 754, 781, 948, 1336, 1955, 2741
Bst6I	CTCTTC	2 cut(s)	501, 1959
BstAFI	CTTAAG	1 cut(s)	658
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstAUI	TGTACA	4 cut(s)	2197, 2387, 2548, 2732
BstBI	TTCGAA	1 cut(s)	701
BstC8I	GCNNGC	4 cut(s)	66, 409, 2442, 2561
BstDEI	CTNAG	8 cut(s)	9, 122, 297, 1035, 2070, 2120, 2451, 2555
BstMAI	GTCTC	6 cut(s)	120, 483, 741, 837, 906, 2479
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 329, 1115, 1169, 1526, 1860, 2560
BstNSI	RCATGY	5 cut(s)	922, 2003, 2219, 2444, 2486
BstSFI	CTRYAG	4 cut(s)	636, 753, 1954, 2126
BstSLI	GKGCMC	3 cut(s)	184, 750, 1791
BstV2I	GAAGAC	4 cut(s)	456, 1799, 1976, 2723
BstX2I	RGATCY	3 cut(s)	623, 2083, 2861
BstYI	RGATCY	3 cut(s)	623, 2083, 2861
BsuI	GTATCC	1 cut(s)	1710
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	7 cut(s)	460, 750, 786, 817, 953, 1057, 1908
Cac8I	GCNNGC	4 cut(s)	66, 409, 2442, 2561
CaiI	CAGNNNCTG	2 cut(s)	35, 1310
CciI	TCATGA	3 cut(s)	1810, 2506, 2679
Cfr10I	RCCGGY	2 cut(s)	64, 442
Csp6I	GTAC	4 cut(s)	2198, 2388, 2549, 2733
CspAI	ACCGGT	1 cut(s)	442
CspCI	CAANNNNNGTGG	2 cut(s)	929, 964
CviQI	GTAC	4 cut(s)	2198, 2388, 2549, 2733
DdeI	CTNAG	8 cut(s)	9, 122, 297, 1035, 2070, 2120, 2451, 2555
DriI	GACNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	2 cut(s)	950, 1510
Eam1104I	CTCTTC	2 cut(s)	501, 1959
Eam1105I	GACNNNNNGTC	1 cut(s)	12
EarI	CTCTTC	2 cut(s)	501, 1959
EciI	GGCGGA	1 cut(s)	1263
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	2 cut(s)	750, 2776
Eco31I	GGTCTC	1 cut(s)	120
Eco32I	GATATC	2 cut(s)	1295, 1882
Eco47I	GGWCC	6 cut(s)	440, 849, 1643, 2455, 2689, 2710
EcoO109I	RGGNCCY	1 cut(s)	2158
EcoRI	GAATTC	1 cut(s)	703
EcoRV	GATATC	2 cut(s)	1295, 1882
EcoT14I	CCWWGG	1 cut(s)	362
EcoT22I	ATGCAT	2 cut(s)	2346, 2788
EcoT38I	GRGCYC	2 cut(s)	750, 2776
ErhI	CCWWGG	1 cut(s)	362
Esp3I	CGTCTC	1 cut(s)	837
FalI	AAGNNNNNCTT	2 cut(s)	2178, 2210
FaqI	GGGAC	1 cut(s)	453
FauNDI	CATATG	5 cut(s)	474, 1066, 1282, 1414, 1498
FbaI	TGATCA	4 cut(s)	520, 1912, 2320, 2676
FblI	GTMKAC	1 cut(s)	1672
FriOI	GRGCYC	2 cut(s)	750, 2776
FspBI	CTAG	3 cut(s)	273, 1533, 1575
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	3 cut(s)	465, 1115, 2399
HapII	CCGG	3 cut(s)	65, 443, 1619
HincII	GTYRAC	1 cut(s)	2744
HindII	GTYRAC	1 cut(s)	2744
HindIII	AAGCTT	2 cut(s)	256, 1345
HpaII	CCGG	3 cut(s)	65, 443, 1619
HphI	GGTGA	4 cut(s)	584, 1371, 1701, 2618
Hpy166II	GTNNAC	4 cut(s)	182, 1057, 1673, 2744
Hpy8I	GTNNAC	4 cut(s)	182, 1057, 1673, 2744
Hpy99I	CGWCG	1 cut(s)	402
HpyAV	CCTTC	3 cut(s)	1749, 2074, 2680
HpyCH4III	ACNGT	8 cut(s)	341, 455, 754, 781, 948, 1336, 1955, 2741
HpyCH4IV	ACGT	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 329, 1115, 1169, 1526, 1860, 2560
HpyF3I	CTNAG	8 cut(s)	9, 122, 297, 1035, 2070, 2120, 2451, 2555
HpySE526I	ACGT	1 cut(s)	766
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Ksp22I	TGATCA	4 cut(s)	520, 1912, 2320, 2676
LmnI	GCTCC	5 cut(s)	679, 1307, 1318, 1525, 2380
MaeI	CTAG	3 cut(s)	273, 1533, 1575
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	3 cut(s)	874, 2030, 2234
MfeI	CAATTG	2 cut(s)	305, 587
MflI	RGATCY	3 cut(s)	623, 2083, 2861
MhlI	GDGCHC	4 cut(s)	184, 750, 1791, 2776
MlsI	TGGCCA	2 cut(s)	952, 1512
MluNI	TGGCCA	2 cut(s)	952, 1512
MlyI	GAGTC	9 cut(s)	22, 233, 302, 518, 1502, 1813, 1933, 2441, 2713
MmeI	TCCRAC	6 cut(s)	492, 1621, 1727, 1926, 1960, 2187
Mox20I	TGGCCA	2 cut(s)	952, 1512
Mph1103I	ATGCAT	2 cut(s)	2346, 2788
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	1375
MscI	TGGCCA	2 cut(s)	952, 1512
MslI	CAYNNNNRTG	2 cut(s)	2349, 2781
Msp20I	TGGCCA	2 cut(s)	952, 1512
MspA1I	CMGCKG	2 cut(s)	773, 2554
MspCI	CTTAAG	1 cut(s)	658
MspI	CCGG	3 cut(s)	65, 443, 1619
MunI	CAATTG	2 cut(s)	305, 587
MwoI	GCNNNNNNNGC	7 cut(s)	74, 329, 1115, 1169, 1526, 1860, 2560
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	1620
NdeI	CATATG	5 cut(s)	474, 1066, 1282, 1414, 1498
NgoMIV	GCCGGC	1 cut(s)	64
NlaIV	GGNNCC	4 cut(s)	441, 748, 1790, 2863
NmuCI	GTSAC	1 cut(s)	2234
NsiI	ATGCAT	2 cut(s)	2346, 2788
NspI	RCATGY	5 cut(s)	922, 2003, 2219, 2444, 2486
NspV	TTCGAA	1 cut(s)	701
PaeI	GCATGC	1 cut(s)	2444
PagI	TCATGA	3 cut(s)	1810, 2506, 2679
PciI	ACATGT	1 cut(s)	2215
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	1375
PfeI	GAWTC	8 cut(s)	358, 394, 614, 800, 887, 937, 1759, 2041
PflMI	CCANNNNNTGG	3 cut(s)	1286, 1652, 1682
PfoI	TCCNGGA	1 cut(s)	481
PinAI	ACCGGT	1 cut(s)	442
PleI	GAGTC	9 cut(s)	21, 233, 301, 517, 1501, 1812, 1932, 2440, 2713
PpsI	GAGTC	9 cut(s)	21, 233, 301, 517, 1501, 1812, 1932, 2440, 2713
PscI	ACATGT	1 cut(s)	2215
PshBI	ATTAAT	3 cut(s)	726, 2012, 2760
PsiI	TTATAA	2 cut(s)	1827, 2303
PspFI	CCCAGC	1 cut(s)	231
PspN4I	GGNNCC	4 cut(s)	441, 748, 1790, 2863
PspOMI	GGGCCC	1 cut(s)	746
PsrI	GAACNNNNNNTAC	2 cut(s)	184, 216
PstI	CTGCAG	1 cut(s)	2130
PstNI	CAGNNNCTG	2 cut(s)	35, 1310
PsuI	RGATCY	3 cut(s)	623, 2083, 2861
PvuII	CAGCTG	2 cut(s)	773, 2554
RsaI	GTAC	4 cut(s)	2199, 2389, 2550, 2734
RsaNI	GTAC	4 cut(s)	2198, 2388, 2549, 2733
RseI	CAYNNNNRTG	2 cut(s)	2349, 2781
SchI	GAGTC	9 cut(s)	22, 233, 302, 518, 1502, 1813, 1933, 2441, 2713
SduI	GDGCHC	4 cut(s)	184, 750, 1791, 2776
SfcI	CTRYAG	4 cut(s)	636, 753, 1954, 2126
SfuI	TTCGAA	1 cut(s)	701
SinI	GGWCC	6 cut(s)	440, 849, 1643, 2455, 2689, 2710
SmiMI	CAYNNNNRTG	2 cut(s)	2349, 2781
SmlI	CTYRAG	3 cut(s)	658, 1047, 1835
SmoI	CTYRAG	3 cut(s)	658, 1047, 1835
SpeI	ACTAGT	1 cut(s)	272
SphI	GCATGC	1 cut(s)	2444
SsiI	CCGC	3 cut(s)	1112, 1248, 1861
SspI	AATATT	1 cut(s)	2754
SspMI	CTAG	3 cut(s)	273, 1533, 1575
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	8 cut(s)	341, 455, 754, 781, 948, 1336, 1955, 2741
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	5 cut(s)	169, 701, 1326, 1357, 1927
TatI	WGTACW	4 cut(s)	2197, 2387, 2548, 2732
TauI	GCSGC	1 cut(s)	1863
TfiI	GAWTC	8 cut(s)	358, 394, 614, 800, 887, 937, 1759, 2041
TscAI	CASTG	7 cut(s)	460, 757, 786, 817, 953, 1064, 1915
TseFI	GTSAC	1 cut(s)	2234
Tsp45I	GTSAC	1 cut(s)	2234
TspGWI	ACGGA	2 cut(s)	2222, 2761
TspRI	CASTG	7 cut(s)	460, 757, 786, 817, 953, 1064, 1915
Van91I	CCANNNNNTGG	3 cut(s)	1286, 1652, 1682
Vha464I	CTTAAG	1 cut(s)	658
VneI	GTGCAC	1 cut(s)	180
VpaK11BI	GGWCC	6 cut(s)	440, 849, 1643, 2455, 2689, 2710
VspI	ATTAAT	3 cut(s)	726, 2012, 2760
XapI	RAATTY	7 cut(s)	703, 1207, 1624, 1821, 1901, 2109, 2567
XbaI	TCTAGA	1 cut(s)	1532
XceI	RCATGY	5 cut(s)	922, 2003, 2219, 2444, 2486
XmiI	GTMKAC	1 cut(s)	1672
XmnI	GAANNNNTTC	1 cut(s)	1375
XspI	CTAG	3 cut(s)	273, 1533, 1575
Zsp2I	ATGCAT	2 cut(s)	2346, 2788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.