Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007034

Physical Location & Seq

Genomic Coordinates Forward (+)

14112806 .. 14120907

Gene Structure 8102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG093900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2844 bp

ATGGCGACTGAGAGTCCAATTAGAATGTCAGAAACTGGTGGAAACTGGGGTTCCCATAAGAAGCCGGCAAAACTTGCATCATCATCTGCTAATATGACAGCAGAGGAGTTGAAATTGCTTCTGAGAGACCATAGGTTTCATAGCAGCAGAAAGGATGTTGCCCCCAATCGAAGTGGAAGTGCACCCCCAAGTATGGAGGGCTCATTTTTGGCCATTAATAATCTGATATCCCAGCAGGACTCTGGCATGACTGGAAGCTTGGCTAGTTTAACTAGTGTTATTGAAAGGTGCGAGTCTGAGGAGCAACTGCGTTCAGATCCAGCTTATCTGGCTTATTACTGTGCCAATGTCAATCTGAATCCAAGACTTCCTTCTCCCCTTATCTCATGGGAGAATCGACGTCTGGCACGCCATATCGGTAGTTTCAGTCCAAACTTGGGACCCGTTGATGACAGTGGTAATGGTTCATTGCATATGTCTCCAGGACTACTGCCTACACATGAGGAAGAGTCAGAGGATGATCAGACACCTCAACAGACTTCTAATGATTGGGTAGATCAGACAAGTTCTGGAGAGGAAGCAGCTCAATTGATAGGACAACAGAAAAATGAAGATTCTTGTGGGTCTACTTCACCTGTAGATAATCATTCACATACCTCAAGCAATGGGGTACCTGAGGAGTTTAATCAGAGTGCTGTTTCCAATTCCTTGCATGATCTCCCTTGGCCCAATGTAGATGAAGAACGTGCAGCTGATACAGTGCTTTCACTAAATGATGAAGCCTCATCCAGTCCTGTTGCAATTTCGTCGTCTCATGTTTATACCAGGAGCACAGGTGTTAATGATGCAGGTGTTTCCCTTGTTGAATCTGGAATGAAGTCTCTTAATGTATCAAACATGCCAGAAAATCAAAAGAATCAAGTACAGTGGCCGCCCAGCTACCAGAATAATTTCCTGCAATACCAGATACAGCAACAGCAAATCAATTTATGCCAAGTTCAAAATGCCACATCTCAGATAACTCCTCAAGGAGCTCACTGCACATATATTGGCATGGATCACTATCACCCTAATACCTCCAAATTTGCAGCGGATGCACAGCCGGTACTCCAGACATCAGGGTTCGCACATCCACTTTATGCAAACGCAGCAGCCTACACGAGTGCAACACATCCGCCGTATTATTCAAATTTTCAGGCACAGAGCTTTGTTTCTCCACAATATGTAGGTGGATATGCTTTAAACCCCCCTGGTTTTTCTCCATATGTTGGTGGATATCATCCTCCAGGGGCTGTTCCTGTTGTTGTTGAGGGAACTGTGGGTTCAAGCTTTAATACTCGAACATCTGCGGGAAGCATTTCACCTGGGGCTGATGTGCAACATATAAGCAAGTCATATGGGCAGCCTGGGTTTCCTCTGCAAACTTCTTATTCCGATCCTATGTATATGCAATACTATCAACAGCCGTTTGTGGAGTCATATGGTGTTTCTGGGCAGTATGCTCCATTGGCATCTAGAGGTGGTCTTGACTTAAACAAAGCGTCCAATCATGCTGCTAGTTTGGATGACCACAAAATCCAACATCCGAGGAATGGAGGGCCGGGGAATTTGAACTCACAAAGAGGACCAGGAAGTGCCAGCTATTATGGAAGTGCACCAAATGTTGGTGTTTTGATGCAGTATCCTACCTCACCCCTAAATAGTCCTGTTCTGCCAACATCATCCATAAGTTCAGGAAGAAATACTGGCTTATATCATGGATGGCCAGGGCACCGAGGCTTTGAGAGTCTTCATGACCCCAAAATTTATAATTTTCTTGAGGAGTTGAAATCTGGCAAAGGCCGCAGATTTGAGCTATCTGATATCACAGGACATATTGTTGAATTTAGTGCTGATCAACATGGGAGTCGATTTATCCAGCAGAAGTTGGAAAACTGTAGTATTGAAGAGAAGGCTTCTGTATTCAGAGAAGTTCTCCCACATGCTTGTCAATTAATGACTGATGTTTTTGGTAACTATGTGATTCAAAAGTTTTTTGAGTATGGAAGCCCTCAGCAAAGGAAGGATCTTGCCAATCAACTTTCAGGCCAAATTTTGCCTCTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGATGTGATTGAGCTTGAACAGAAAGCAAGACTTGTACATGAGTTGGATGGACATGTTATGAGATGTGTTCGTGACCAAAATGGAAACCATGTCATACAAAAGTGTATTGAGAGCATCCCAACAGAAAAGATTGGGTTTATAATATCTGCTTTCCATGATCAAGTTGCACCACTTTCAATGCATCCCTATGGTTGCCGTGTTATACAGAGAGTTTTGGAGCATTGTACAAATGAGTTGCAATGCCAGTTTATAGTTGATGAGATCTTGGACTCTGTGCGTGCTCTTGCTCAGGACCAGTATGGCAATTATGTCTCCCAGCATGTATTGGAGAGGGGGAAACCTCATGAAAGAAGCCGAATTATTAGCAAGTTGTCGGGTCATATTGTACAGCTGAGCCAGCACAAATTTGCATCCAATGTTGTTGAGAAATGTTTGGAGTATGGTGACGCTGCAGAACGAGAACTGTTGATTAGGGAGATTGTTGGCCCTAATGATGGAAATGATAACTTATTGATAATGATGAAGGACCAATTTGCTAATTATGTGGTGCAGAAGGCTCTTGAAATCTGTACAGACAGTCAACGAACGATATTGATTAATCGCATAAGGGCTCATACTCATGCATTGAAGAAATACACTTATGGGAAACACATTGTTGCTCGATTTGAGCAGCTATTTGGAGAAGGTGTGTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632 NABP PUF

Protein Analysis

947

Amino Acids

104.24

Weight (kDa)

5.92

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF	PF00806	625 - 659	1.9e-10	Pumilio-family RNA binding repeat
PUF	PF00806	661 - 694	3.4e-09	Pumilio-family RNA binding repeat
PUF	PF00806	697 - 730	4.6e-09	Pumilio-family RNA binding repeat
PUF	PF00806	769 - 804	3.3e-13	Pumilio-family RNA binding repeat
PUF	PF00806	809 - 839	1.4e-06	Pumilio-family RNA binding repeat
PUF	PF00806	842 - 875	6.8e-11	Pumilio-family RNA binding repeat
PUF	PF00806	888 - 917	4.7e-08	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25880 AT4G25880 AT4G25880 AT4G25880 AT4G25880
fragaria_vesca	FvH4_4g07600 FvH4_4g07600 FvH4_4g07600
malus_domestica	MD13G1245500.v1.1 MD16G1252800.v1.1
prunus_persica	Prupe.1G079300_v2.0.a1 Prupe.1G079300_v2.0.a1
pyrus_communis	pycom13g21640 pycom16g21410
rosa_chinensis	RchiOBHm_Chr4g0400221
rosa_laevigata	RLG00000009203
rosa_multiflora	Rmu_sc0004338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00345180
rosa_rugosa	Rorug04G0023900 Rorug04G0024000
rosa_samantha	Rh4AG098900 Rh4BG097200 Rh4CG108400 Rh4DG093900
rosa_wichuraiana	Rw4G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1809, 2285
AarI	CACCTGC	1 cut(s)	839
AatII	GACGTC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	839
Acc65I	GGTACC	1 cut(s)	670
AccB1I	GGYRCC	2 cut(s)	670, 1770
AccB7I	CCANNNNNTGG	2 cut(s)	1268, 1664
AccI	GTMKAC	1 cut(s)	626
AciI	CCGC	5 cut(s)	932, 1091, 1175, 1349, 1843
AclWI	GGATC	4 cut(s)	311, 1065, 1430, 2073
AcoI	YGGCCR	3 cut(s)	210, 929, 1763
AcsI	RAATTY	7 cut(s)	1082, 1189, 1606, 1803, 1883, 2091, 2549
AcyI	GRCGYC	1 cut(s)	400
AfaI	GTAC	7 cut(s)	672, 924, 1107, 2181, 2371, 2532, 2716
AfiI	CCNNNNNNNGG	6 cut(s)	193, 437, 1268, 1592, 1664, 2639
AflIII	ACRYGT	1 cut(s)	2197
AhdI	GACNNNNNGTC	1 cut(s)	12
AhlI	ACTAGT	1 cut(s)	272
AjnI	CCWGG	8 cut(s)	481, 824, 1249, 1285, 1363, 1405, 1627, 1765
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
Alw21I	GWGCWC	5 cut(s)	184, 833, 1036, 1657, 2428
Alw26I	GTCTC	5 cut(s)	120, 483, 816, 885, 2461
Alw44I	GTGCAC	2 cut(s)	180, 1653
AlwI	GGATC	4 cut(s)	311, 1065, 1430, 2073
AlwNI	CAGNNNCTG	2 cut(s)	35, 1292
AoxI	GGCC	8 cut(s)	210, 725, 929, 1598, 1763, 1840, 2086, 2629
ApaLI	GTGCAC	2 cut(s)	180, 1653
ApoI	RAATTY	7 cut(s)	1082, 1189, 1606, 1803, 1883, 2091, 2549
AseI	ATTAAT	3 cut(s)	216, 1994, 2742
Asp700I	GAANNNNTTC	2 cut(s)	950, 1357
Asp718I	GGTACC	1 cut(s)	670
AspS9I	GGNCC	7 cut(s)	440, 726, 1598, 1625, 2437, 2630, 2671
AsuC2I	CCSGG	1 cut(s)	1602
AsuHPI	GGTGA	5 cut(s)	624, 1058, 1353, 1683, 2600
AvaII	GGWCC	4 cut(s)	440, 1625, 2437, 2671
AxyI	CCTNAGG	1 cut(s)	675
BaeGI	GKGCMC	3 cut(s)	184, 1657, 1773
BalI	TGGCCA	2 cut(s)	212, 1765
BanI	GGYRCC	2 cut(s)	670, 1770
BanII	GRGCYC	3 cut(s)	203, 1036, 2758
BauI	CACGAG	1 cut(s)	1159
BbsI	GAAGAC	1 cut(s)	1781
Bbv12I	GWGCWC	5 cut(s)	184, 833, 1036, 1657, 2428
BbvCI	CCTCAGC	1 cut(s)	2052
BccI	CCATC	3 cut(s)	1755, 2186, 2633
BceAI	ACGGC	3 cut(s)	1162, 1450, 2325
BcgI	CGANNNNNNTGC	2 cut(s)	789, 823
BciT130I	CCWGG	8 cut(s)	483, 826, 1251, 1287, 1365, 1407, 1629, 1767
BciVI	GTATCC	1 cut(s)	1692
BclI	TGATCA	3 cut(s)	520, 1894, 2302
BcnI	CCSGG	1 cut(s)	1602
BcoDI	GTCTC	5 cut(s)	120, 483, 816, 885, 2461
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	4 cut(s)	264, 273, 1515, 1557
BfmI	CTRYAG	4 cut(s)	636, 1936, 2108, 2595
BfuAI	ACCTGC	1 cut(s)	839
BfuI	GTATCC	1 cut(s)	1692
BglII	AGATCT	1 cut(s)	2406
BlpI	GCTNAGC	1 cut(s)	2537
Bme1390I	CCNGG	9 cut(s)	483, 826, 1251, 1287, 1365, 1407, 1602, 1629, 1767
Bme18I	GGWCC	4 cut(s)	440, 1625, 2437, 2671
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmgT120I	GGNCC	7 cut(s)	440, 726, 1598, 1625, 2437, 2630, 2671
BmiI	GGNNCC	5 cut(s)	52, 441, 442, 672, 1772
BmrFI	CCNGG	9 cut(s)	483, 826, 1251, 1287, 1365, 1407, 1602, 1629, 1767
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	8 cut(s)	86, 835, 1084, 1520, 1665, 2268, 2335, 2564
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	1781
BplI	GAGNNNNNCTC	2 cut(s)	1959, 1991
BpmI	CTGGAG	4 cut(s)	465, 591, 1094, 1269
Bpu10I	CCTNAGC	2 cut(s)	2052, 2433
Bpu1102I	GCTNAGC	1 cut(s)	2537
BpuEI	CTTGAG	3 cut(s)	643, 1011, 1838
BpuMI	CCSGG	1 cut(s)	1602
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaHI	GRCGYC	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	9 cut(s)	722, 1249, 1286, 1364, 1406, 1586, 1601, 1766, 1774
BsaXI	ACNNNNNCTCC	3 cut(s)	820, 850, 2817
Bsc4I	CCNNNNNNNGG	6 cut(s)	193, 437, 1268, 1592, 1664, 2639
Bse118I	RCCGGY	2 cut(s)	64, 1102
Bse1I	ACTGG	7 cut(s)	40, 50, 256, 789, 1750, 2389, 2440
Bse21I	CCTNAGG	1 cut(s)	675
Bse3DI	GCAATG	3 cut(s)	467, 670, 2390
Bse8I	GATNNNNATC	1 cut(s)	1062
BseBI	CCWGG	8 cut(s)	483, 826, 1251, 1287, 1365, 1407, 1629, 1767
BseDI	CCNNGG	9 cut(s)	722, 1249, 1286, 1364, 1406, 1586, 1601, 1766, 1774
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	6 cut(s)	193, 437, 1268, 1592, 1664, 2639
BseMI	GCAATG	3 cut(s)	467, 670, 2390
BseMII	CTCAG	7 cut(s)	113, 288, 666, 1028, 2066, 2447, 2528
BseNI	ACTGG	7 cut(s)	40, 50, 256, 789, 1750, 2389, 2440
BseRI	GAGGAG	5 cut(s)	119, 314, 692, 1014, 1835
BseSI	GKGCMC	3 cut(s)	184, 1657, 1773
BseYI	CCCAGC	3 cut(s)	231, 935, 2460
BsgI	GTGCAG	3 cut(s)	768, 1024, 2714
BshFI	GGCC	8 cut(s)	212, 727, 931, 1600, 1765, 1842, 2088, 2631
BshNI	GGYRCC	2 cut(s)	670, 1770
BsiHKAI	GWGCWC	5 cut(s)	184, 833, 1036, 1657, 2428
BsiSI	CCGG	3 cut(s)	65, 1103, 1601
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	6 cut(s)	193, 437, 1268, 1592, 1664, 2639
BsmAI	GTCTC	5 cut(s)	120, 483, 816, 885, 2461
BsmBI	CGTCTC	1 cut(s)	816
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	8 cut(s)	212, 727, 931, 1600, 1765, 1842, 2088, 2631
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	8 cut(s)	184, 203, 833, 1036, 1657, 1773, 2428, 2758
Bsp1407I	TGTACA	4 cut(s)	2179, 2369, 2530, 2714
Bsp1720I	GCTNAGC	1 cut(s)	2537
BspACI	CCGC	5 cut(s)	932, 1091, 1175, 1349, 1843
BspANI	GGCC	8 cut(s)	212, 727, 931, 1600, 1765, 1842, 2088, 2631
BspCNI	CTCAG	7 cut(s)	114, 289, 667, 1027, 2065, 2446, 2529
BspHI	TCATGA	2 cut(s)	1792, 2488
BspLI	GGNNCC	5 cut(s)	52, 441, 442, 672, 1772
BspMAI	CTGCAG	2 cut(s)	2112, 2599
BspMI	ACCTGC	1 cut(s)	839
BspPI	GGATC	4 cut(s)	311, 1065, 1430, 2073
BspT107I	GGYRCC	2 cut(s)	670, 1770
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	3 cut(s)	467, 670, 2390
BsrFI	RCCGGY	2 cut(s)	64, 1102
BsrGI	TGTACA	4 cut(s)	2179, 2369, 2530, 2714
BsrI	ACTGG	7 cut(s)	40, 50, 256, 789, 1750, 2389, 2440
BssAI	RCCGGY	2 cut(s)	64, 1102
BssECI	CCNNGG	9 cut(s)	722, 1249, 1286, 1364, 1406, 1586, 1601, 1766, 1774
BssNI	GRCGYC	1 cut(s)	400
BssSI	CACGAG	1 cut(s)	1159
BssT1I	CCWWGG	1 cut(s)	722
Bst2BI	CACGAG	1 cut(s)	1159
Bst2UI	CCWGG	8 cut(s)	483, 826, 1251, 1287, 1365, 1407, 1629, 1767
Bst4CI	ACNGT	8 cut(s)	341, 455, 760, 927, 1318, 1937, 2610, 2723
Bst6I	CTCTTC	2 cut(s)	501, 1941
BstACI	GRCGYC	1 cut(s)	400
BstAPI	GCANNNNNTGC	2 cut(s)	74, 1094
BstAUI	TGTACA	4 cut(s)	2179, 2369, 2530, 2714
BstC8I	GCNNGC	5 cut(s)	66, 409, 1639, 2424, 2543
BstDEI	CTNAG	9 cut(s)	9, 122, 297, 675, 1014, 2052, 2102, 2433, 2537
BstMAI	GTCTC	5 cut(s)	120, 483, 816, 885, 2461
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 329, 1094, 1148, 1508, 1842, 2542
BstNI	CCWGG	8 cut(s)	483, 826, 1251, 1287, 1365, 1407, 1629, 1767
BstNSI	RCATGY	4 cut(s)	901, 1985, 2201, 2468
BstSCI	CCNGG	9 cut(s)	481, 824, 1249, 1285, 1363, 1405, 1600, 1627, 1765
BstSFI	CTRYAG	4 cut(s)	636, 1936, 2108, 2595
BstSLI	GKGCMC	3 cut(s)	184, 1657, 1773
BstV2I	GAAGAC	1 cut(s)	1781
BstX2I	RGATCY	3 cut(s)	316, 2065, 2406
BstYI	RGATCY	3 cut(s)	316, 2065, 2406
Bsu36I	CCTNAGG	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	1692
BsuRI	GGCC	8 cut(s)	212, 727, 931, 1600, 1765, 1842, 2088, 2631
BtsI	GCAGTG	1 cut(s)	1036
BtsIMutI	CAGTG	4 cut(s)	460, 765, 932, 1036
BveI	ACCTGC	1 cut(s)	839
Cac8I	GCNNGC	5 cut(s)	66, 409, 1639, 2424, 2543
CaiI	CAGNNNCTG	2 cut(s)	35, 1292
CciI	TCATGA	2 cut(s)	1792, 2488
Cfr10I	RCCGGY	2 cut(s)	64, 1102
Cfr13I	GGNCC	7 cut(s)	440, 726, 1598, 1625, 2437, 2630, 2671
CseI	GACGC	2 cut(s)	1530, 2600
Csp6I	GTAC	7 cut(s)	671, 923, 1106, 2180, 2370, 2531, 2715
CspCI	CAANNNNNGTGG	4 cut(s)	154, 189, 908, 943
CviQI	GTAC	7 cut(s)	671, 923, 1106, 2180, 2370, 2531, 2715
DdeI	CTNAG	9 cut(s)	9, 122, 297, 675, 1014, 2052, 2102, 2433, 2537
DraI	TTTAAA	1 cut(s)	1242
DriI	GACNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	3 cut(s)	210, 929, 1763
Eam1104I	CTCTTC	2 cut(s)	501, 1941
Eam1105I	GACNNNNNGTC	1 cut(s)	12
EarI	CTCTTC	2 cut(s)	501, 1941
EciI	GGCGGA	1 cut(s)	1164
Ecl136II	GAGCTC	1 cut(s)	1034
Eco130I	CCWWGG	1 cut(s)	722
Eco24I	GRGCYC	3 cut(s)	203, 1036, 2758
Eco31I	GGTCTC	1 cut(s)	120
Eco32I	GATATC	3 cut(s)	228, 1277, 1864
Eco47I	GGWCC	4 cut(s)	440, 1625, 2437, 2671
Eco53kI	GAGCTC	1 cut(s)	1034
Eco81I	CCTNAGG	1 cut(s)	675
EcoICRI	GAGCTC	1 cut(s)	1034
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	8 cut(s)	481, 824, 1249, 1285, 1363, 1405, 1627, 1765
EcoRV	GATATC	3 cut(s)	228, 1277, 1864
EcoT14I	CCWWGG	1 cut(s)	722
EcoT22I	ATGCAT	2 cut(s)	2328, 2770
EcoT38I	GRGCYC	3 cut(s)	203, 1036, 2758
ErhI	CCWWGG	1 cut(s)	722
Esp3I	CGTCTC	1 cut(s)	816
FalI	AAGNNNNNCTT	4 cut(s)	355, 387, 2160, 2192
FaqI	GGGAC	1 cut(s)	453
FauI	CCCGC	1 cut(s)	1342
FauNDI	CATATG	4 cut(s)	474, 1264, 1396, 1480
FbaI	TGATCA	3 cut(s)	520, 1894, 2302
FblI	GTMKAC	1 cut(s)	626
FriOI	GRGCYC	3 cut(s)	203, 1036, 2758
FspBI	CTAG	4 cut(s)	264, 273, 1515, 1557
GsaI	CCCAGC	3 cut(s)	235, 939, 2464
GsuI	CTGGAG	4 cut(s)	465, 591, 1094, 1269
HaeIII	GGCC	8 cut(s)	212, 727, 931, 1600, 1765, 1842, 2088, 2631
HapII	CCGG	3 cut(s)	65, 1103, 1601
HgaI	GACGC	2 cut(s)	1530, 2600
Hin1I	GRCGYC	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	2726
HindII	GTYRAC	1 cut(s)	2726
HindIII	AAGCTT	2 cut(s)	256, 1327
HpaII	CCGG	3 cut(s)	65, 1103, 1601
HphI	GGTGA	5 cut(s)	624, 1058, 1353, 1683, 2600
Hpy166II	GTNNAC	4 cut(s)	182, 627, 1655, 2726
Hpy8I	GTNNAC	4 cut(s)	182, 627, 1655, 2726
Hpy99I	CGWCG	2 cut(s)	402, 811
HpyAV	CCTTC	6 cut(s)	381, 1945, 2056, 2662, 2692, 2822
HpyCH4III	ACNGT	8 cut(s)	341, 455, 760, 927, 1318, 1937, 2610, 2723
HpyCH4IV	ACGT	2 cut(s)	400, 745
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 329, 1094, 1148, 1508, 1842, 2542
HpyF3I	CTNAG	9 cut(s)	9, 122, 297, 675, 1014, 2052, 2102, 2433, 2537
HpySE526I	ACGT	2 cut(s)	400, 745
Hsp92I	GRCGYC	1 cut(s)	400
KflI	GGGWCCC	1 cut(s)	440
KpnI	GGTACC	1 cut(s)	674
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Ksp22I	TGATCA	3 cut(s)	520, 1894, 2302
LmnI	GCTCC	5 cut(s)	301, 828, 1031, 1507, 2362
LweI	GCATC	8 cut(s)	86, 835, 1084, 1520, 1665, 2268, 2335, 2564
MaeI	CTAG	4 cut(s)	264, 273, 1515, 1557
MaeII	ACGT	2 cut(s)	400, 745
MaeIII	GTNAC	3 cut(s)	2012, 2216, 2588
MboII	GAAGA	7 cut(s)	518, 623, 752, 1749, 1781, 1958, 2785
MfeI	CAATTG	1 cut(s)	587
MflI	RGATCY	3 cut(s)	316, 2065, 2406
MhlI	GDGCHC	8 cut(s)	184, 203, 833, 1036, 1657, 1773, 2428, 2758
MlsI	TGGCCA	2 cut(s)	212, 1765
MluNI	TGGCCA	2 cut(s)	212, 1765
MlyI	GAGTC	8 cut(s)	22, 233, 302, 518, 1484, 1795, 1915, 2408
MmeI	TCCRAC	3 cut(s)	1603, 1908, 2169
Mox20I	TGGCCA	2 cut(s)	212, 1765
Mph1103I	ATGCAT	2 cut(s)	2328, 2770
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	2 cut(s)	950, 1357
MscI	TGGCCA	2 cut(s)	212, 1765
MslI	CAYNNNNRTG	2 cut(s)	2331, 2763
Msp20I	TGGCCA	2 cut(s)	212, 1765
MspA1I	CMGCKG	3 cut(s)	752, 1091, 2536
MspI	CCGG	3 cut(s)	65, 1103, 1601
MspR9I	CCNGG	9 cut(s)	483, 826, 1251, 1287, 1365, 1407, 1602, 1629, 1767
MunI	CAATTG	1 cut(s)	587
MvaI	CCWGG	8 cut(s)	483, 826, 1251, 1287, 1365, 1407, 1629, 1767
MwoI	GCNNNNNNNGC	7 cut(s)	74, 329, 1094, 1148, 1508, 1842, 2542
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	1602
NdeI	CATATG	4 cut(s)	474, 1264, 1396, 1480
NgoMIV	GCCGGC	1 cut(s)	64
NlaIV	GGNNCC	5 cut(s)	52, 441, 442, 672, 1772
NmuCI	GTSAC	2 cut(s)	2216, 2588
NsiI	ATGCAT	2 cut(s)	2328, 2770
NspI	RCATGY	4 cut(s)	901, 1985, 2201, 2468
PagI	TCATGA	2 cut(s)	1792, 2488
PaqCI	CACCTGC	1 cut(s)	839
PciI	ACATGT	1 cut(s)	2197
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	2 cut(s)	950, 1357
PfeI	GAWTC	6 cut(s)	358, 394, 614, 866, 916, 2023
PflMI	CCANNNNNTGG	2 cut(s)	1268, 1664
PfoI	TCCNGGA	1 cut(s)	481
PleI	GAGTC	8 cut(s)	21, 233, 301, 517, 1483, 1794, 1914, 2408
PpsI	GAGTC	8 cut(s)	21, 233, 301, 517, 1483, 1794, 1914, 2408
PpuMI	RGGWCCY	1 cut(s)	440
PscI	ACATGT	1 cut(s)	2197
PshBI	ATTAAT	3 cut(s)	216, 1994, 2742
PsiI	TTATAA	2 cut(s)	1809, 2285
Psp124BI	GAGCTC	1 cut(s)	1036
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	8 cut(s)	481, 824, 1249, 1285, 1363, 1405, 1627, 1765
PspFI	CCCAGC	3 cut(s)	231, 935, 2460
PspGI	CCWGG	8 cut(s)	481, 824, 1249, 1285, 1363, 1405, 1627, 1765
PspN4I	GGNNCC	5 cut(s)	52, 441, 442, 672, 1772
PspPI	GGNCC	7 cut(s)	440, 726, 1598, 1625, 2437, 2630, 2671
PspPPI	RGGWCCY	1 cut(s)	440
PstI	CTGCAG	2 cut(s)	2112, 2599
PstNI	CAGNNNCTG	2 cut(s)	35, 1292
PsuI	RGATCY	3 cut(s)	316, 2065, 2406
PvuII	CAGCTG	2 cut(s)	752, 2536
RsaI	GTAC	7 cut(s)	672, 924, 1107, 2181, 2371, 2532, 2716
RsaNI	GTAC	7 cut(s)	671, 923, 1106, 2180, 2370, 2531, 2715
RseI	CAYNNNNRTG	2 cut(s)	2331, 2763
SacI	GAGCTC	1 cut(s)	1036
Sau96I	GGNCC	7 cut(s)	440, 726, 1598, 1625, 2437, 2630, 2671
SchI	GAGTC	8 cut(s)	22, 233, 302, 518, 1484, 1795, 1915, 2408
ScrFI	CCNGG	9 cut(s)	483, 826, 1251, 1287, 1365, 1407, 1602, 1629, 1767
SduI	GDGCHC	8 cut(s)	184, 203, 833, 1036, 1657, 1773, 2428, 2758
SfaNI	GCATC	8 cut(s)	86, 835, 1084, 1520, 1665, 2268, 2335, 2564
SfcI	CTRYAG	4 cut(s)	636, 1936, 2108, 2595
SinI	GGWCC	4 cut(s)	440, 1625, 2437, 2671
SmiMI	CAYNNNNRTG	2 cut(s)	2331, 2763
SmlI	CTYRAG	3 cut(s)	658, 1026, 1817
SmoI	CTYRAG	3 cut(s)	658, 1026, 1817
SpeI	ACTAGT	1 cut(s)	272
SsiI	CCGC	5 cut(s)	932, 1091, 1175, 1349, 1843
SspMI	CTAG	4 cut(s)	264, 273, 1515, 1557
SstI	GAGCTC	1 cut(s)	1036
StyD4I	CCNGG	9 cut(s)	481, 824, 1249, 1285, 1363, 1405, 1600, 1627, 1765
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	8 cut(s)	341, 455, 760, 927, 1318, 1937, 2610, 2723
TaiI	ACGT	2 cut(s)	403, 748
TaqI	TCGA	5 cut(s)	169, 397, 1339, 1909, 2806
TatI	WGTACW	5 cut(s)	922, 2179, 2369, 2530, 2714
TauI	GCSGC	2 cut(s)	934, 1845
TfiI	GAWTC	6 cut(s)	358, 394, 614, 866, 916, 2023
TscAI	CASTG	4 cut(s)	460, 765, 932, 1043
TseFI	GTSAC	2 cut(s)	2216, 2588
Tsp45I	GTSAC	2 cut(s)	2216, 2588
TspDTI	ATGAA	9 cut(s)	128, 456, 624, 753, 792, 890, 1781, 2505, 2681
TspRI	CASTG	4 cut(s)	460, 765, 932, 1043
Van91I	CCANNNNNTGG	2 cut(s)	1268, 1664
VneI	GTGCAC	2 cut(s)	180, 1653
VpaK11BI	GGWCC	4 cut(s)	440, 1625, 2437, 2671
VspI	ATTAAT	3 cut(s)	216, 1994, 2742
XapI	RAATTY	7 cut(s)	1082, 1189, 1606, 1803, 1883, 2091, 2549
XbaI	TCTAGA	1 cut(s)	1514
XceI	RCATGY	4 cut(s)	901, 1985, 2201, 2468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	626
XmnI	GAANNNNTTC	2 cut(s)	950, 1357
XspI	CTAG	4 cut(s)	264, 273, 1515, 1557
ZraI	GACGTC	1 cut(s)	401
Zsp2I	ATGCAT	2 cut(s)	2328, 2770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.