Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007034

Physical Location & Seq

Genomic Coordinates Forward (+)

28614185 .. 28614826

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1252800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCCCTTATATCTTGGTTTTTCAGGGAGCATGTGAGGTTCCTTATACTATCATACGGGGGCATGTTATTTTCTGATAGCATGGCGACAGAAATTCCAATAAGAATGTCAGAAACTAGTGGAAAATGGGCTCCTCGTAAGAAGACTGCTAAATTTGCATTGTCATCTGCTGATATGGCAGCAGAGGAGTTGAAATTGCTTCTCAGGGGCTATAAGTTTAAAAGCAACAAACAGGAGGTTTCTCCTAATCGAAGTGGAAGTGCACCCCCAAGTATGGAGGGTTCGTTTTTTGCCATCGATAACCTTCTATCCCAGCAGGACACCAGCATGAATAGAAGCTTGGCAAGTCTAAGTAGTGTTATTGAAAGGTGTGAGATTGAGGAACAATTACGAGCTGATCCAGCTTGTTTGGCATATTACTGTGCCAATGTCAATTTGAATCCTAGACTTCCTCGTCCACTTTTTTCTTGGGAGAATCGACGTCTGGCAAGCTATATTGGTAGTTTCAGCCAGAACGGGGGACATGTAGATTGCAGTGGCAGTTTTCTGTTGCATGTGTCTCAAGGATCACTTCATACACACAAGGAAGAATATGAGGATGATCAGTCTTCCCAACATGTTTCTAATGATTGTGTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632 NABP PUF

Protein Analysis

214

Amino Acids

23.93

Weight (kDa)

6.31

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25880 AT4G25880 AT4G25880 AT4G25880 AT4G25880
fragaria_vesca	FvH4_4g07600 FvH4_4g07600 FvH4_4g07600
malus_domestica	MD13G1245500.v1.1 MD16G1252800.v1.1
prunus_persica	Prupe.1G079300_v2.0.a1 Prupe.1G079300_v2.0.a1
pyrus_communis	pycom13g21640 pycom16g21410
rosa_chinensis	RchiOBHm_Chr4g0400221
rosa_laevigata	RLG00000009203
rosa_multiflora	Rmu_sc0004338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00345180
rosa_rugosa	Rorug04G0023900 Rorug04G0024000
rosa_samantha	Rh4AG098900 Rh4BG097200 Rh4CG108400 Rh4DG093900
rosa_wichuraiana	Rw4G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	453
AatII	GACGTC	1 cut(s)	484
AclWI	GGATC	2 cut(s)	392, 574
AcsI	RAATTY	2 cut(s)	93, 152
AcyI	GRCGYC	1 cut(s)	481
AfiI	CCNNNNNNNGG	2 cut(s)	274, 517
AflIII	ACRYGT	2 cut(s)	523, 616
AgsI	TTSAA	3 cut(s)	193, 365, 439
AhlI	ACTAGT	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	4 cut(s)	339, 395, 404, 492
AluI	AGCT	4 cut(s)	339, 395, 404, 492
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	564
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	392, 574
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	93, 152
BaeGI	GKGCMC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	133
BbsI	GAAGAC	2 cut(s)	149, 600
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	302
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	564
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	2 cut(s)	117, 444
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	41, 132
BpiI	GAAGAC	2 cut(s)	149, 600
BpuEI	CTTGAG	1 cut(s)	546
Bsa29I	ATCGAT	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 517
BseCI	ATCGAT	1 cut(s)	297
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	2 cut(s)	274, 517
BseMII	CTCAG	1 cut(s)	217
BseRI	GAGGAG	2 cut(s)	123, 200
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	191
BseYI	CCCAGC	1 cut(s)	312
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	2 cut(s)	274, 517
BsmAI	GTCTC	1 cut(s)	564
BsmFI	GGGAC	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	133, 265
Bsp143I	GATC	3 cut(s)	397, 566, 601
BspCNI	CTCAG	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	41, 132
BspPI	GGATC	2 cut(s)	392, 574
BssMI	GATC	3 cut(s)	397, 566, 601
BssNI	GRCGYC	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	203, 350
BstF5I	GGATG	1 cut(s)	604
BstKTI	GATC	3 cut(s)	400, 569, 604
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	3 cut(s)	397, 566, 601
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 176, 401, 410
BstNSI	RCATGY	5 cut(s)	35, 67, 527, 557, 620
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	2 cut(s)	149, 600
Bsu15I	ATCGAT	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	604
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	490
ClaI	ATCGAT	1 cut(s)	297
CviAII	CATG	7 cut(s)	32, 64, 82, 328, 524, 554, 617
CviJI	RGCY	7 cut(s)	131, 210, 339, 395, 404, 492, 510
CviKI_1	RGCY	7 cut(s)	131, 210, 339, 395, 404, 492, 510
DdeI	CTNAG	2 cut(s)	203, 350
DpnI	GATC	3 cut(s)	399, 568, 603
DpnII	GATC	3 cut(s)	397, 566, 601
DraI	TTTAAA	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	453
DseDI	GACNNNNNNGTC	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	7 cut(s)	35, 67, 85, 331, 527, 557, 620
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	7 cut(s)	31, 63, 81, 327, 523, 553, 616
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	611
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	117, 444
GluI	GCNGC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	481
Hin1II	CATG	7 cut(s)	35, 67, 85, 331, 527, 557, 620
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	2 cut(s)	439, 475
Hpy166II	GTNNAC	2 cut(s)	263, 458
Hpy188I	TCNGA	2 cut(s)	76, 112
Hpy8I	GTNNAC	2 cut(s)	263, 458
Hpy99I	CGWCG	1 cut(s)	483
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	4 cut(s)	158, 263, 534, 553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 176, 401, 410
HpyF3I	CTNAG	2 cut(s)	203, 350
HpySE526I	ACGT	1 cut(s)	481
Hsp92I	GRCGYC	1 cut(s)	481
Hsp92II	CATG	7 cut(s)	35, 67, 85, 331, 527, 557, 620
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	397, 566, 601
LmnI	GCTCC	2 cut(s)	28, 136
LpnPI	CCDG	9 cut(s)	10, 190, 218, 302, 326, 337, 414, 470, 524
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	117, 444
MaeII	ACGT	1 cut(s)	481
MalI	GATC	3 cut(s)	399, 568, 603
MboI	GATC	3 cut(s)	397, 566, 601
MboII	GAAGA	3 cut(s)	154, 599, 600
MhlI	GDGCHC	2 cut(s)	133, 265
MluCI	AATT	6 cut(s)	93, 152, 194, 386, 433, 637
MnlI	CCTC	8 cut(s)	30, 144, 178, 229, 271, 373, 462, 589
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	155, 176, 401, 410
NdeII	GATC	3 cut(s)	397, 566, 601
NlaIII	CATG	7 cut(s)	35, 67, 85, 331, 527, 557, 620
NlaIV	GGNNCC	2 cut(s)	41, 132
NspI	RCATGY	5 cut(s)	35, 67, 527, 557, 620
PciI	ACATGT	2 cut(s)	523, 616
PfeI	GAWTC	2 cut(s)	439, 475
PkrI	GCNGC	1 cut(s)	181
PscI	ACATGT	2 cut(s)	523, 616
PspFI	CCCAGC	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	41, 132
PsrI	GAACNNNNNNTAC	2 cut(s)	265, 297
RseI	CAYNNNNRTG	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	397, 566, 601
SduI	GDGCHC	2 cut(s)	133, 265
SetI	ASST	9 cut(s)	41, 240, 306, 341, 371, 397, 406, 484, 494
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	6 cut(s)	93, 152, 194, 386, 433, 637
SspMI	CTAG	2 cut(s)	117, 444
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	3 cut(s)	250, 297, 478
TasI	AATT	6 cut(s)	93, 152, 194, 386, 433, 637
TfiI	GAWTC	2 cut(s)	439, 475
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	344, 563
TspRI	CASTG	1 cut(s)	541
VneI	GTGCAC	1 cut(s)	261
XapI	RAATTY	2 cut(s)	93, 152
XceI	RCATGY	5 cut(s)	35, 67, 527, 557, 620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465
XspI	CTAG	2 cut(s)	117, 444
ZraI	GACGTC	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.