Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007034

Physical Location & Seq

Genomic Coordinates Reverse (-)

3392532 .. 3395633

Gene Structure 3102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0023900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

ATGTCTAGTAGTTCTGCTAGTAACTTGCATGCAAAAGTGTGGAGCATCGAGTTGATCCTAGATGTTCGAAACAAAAGTCTTAACGTGCAGAAGAGAAAGTGGCATTCTGCCTTTGTGGCCATCTACTGCTCTAGAGCCTTCCTCAAACCTCCTGTGCTAAAAGACATCAACATCAACACCAAATTACTATCTCGCGCTCCCTCTTACACAACCATTAGTGTTGATGATTCGGTTTCGGTGCCAGACGCTAATGGCTTCAGAATAGACCAGACAAGACTCACTGAGCTTGTGAAGGCAAAAGATCTAAACCAGCTCCATGAGTTGGGAGGGGCTCAAGGTGTAGCAGAAGCACTCGAAACTGATGTAGAGCATGGAATTCATGGCGAAGATGCTGAAGACATTCTCAAGAGAATCGAAGCGTTTGGTTCCAACACATACAAGAGACCACCAAAAAAAGGCTTCTTACATTTTGTTTGGGAAGCCTTCAAAGACGTCACAATCTTAATCCTCTTGGGATGTGCTGCGCTTTCTCTTGGTTTTGGAATCAAAGAGCATGGATTAAAAGAAGGTTGGATTGACGGTGGAAGCATATGTCTTGCAATCATTCTAGTTATTTCTGTTTCGGCCATAAGCAACTATAGACAGAGCATACAGTTTGACAAATTGTCAAAAGTCAGTAATAATCTCCAGATTGAGGCTGTGAGAAAGGGAAGGCGCCAACAGATTTCGATATTTGATATTGTGGTTGGTGATGTCATTTGTTTGAAGATTGGAGATCAAGTTCCAGCTGATGGATTGCTTCTGGATGGCCATTCTTTATCAGTAGATGAATCAAGCATGACGGGGGAGAGTGACCATGTTGAAATTAGCATTACTCAGAATCCATTCTTATTTTCTGGAACTAAAATTGCTGATGGTTATGGTCGGATGCTTGTCACATCTGTTGGCATGAACACAAATTGGGGTGAAATGATGAGCAAAATCAGCCAGGACACGAGTGAAAAGACGCCTCTACAAGCACGTCTAGACAAGCTAACTTCGTCTATAGGTAAAGTTGGTTTGGCAGTTGCTTTCTTAGTTCTTTCAGTCATGTTGGTTCGATACTTCACAGGGAATACCGTGGATGAGAATGGAAGCAAAATGTTCAATGGCAGCAAGACAAAAGTAGATGACATAATAAATGCTATCATTGGAATTGTAGCAGCTGCGGTTACAATTGTTGTAGTAGCAATTCCAGAAGGTCTGCCATTGGCTGTGACTCTCACTCTTGCTTATTCCATGAAGAGAATGATGGCTGATAATGCAATGGTACGGAAGCTCTCTGCTTGTGAGACCATGGGGTCTGCTACAACAATTTGTACAGACAAAACAGGTACTCTGACCATGAACCAGATGAAGGTGACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCTTGTGTTCTCGACTTTATTCAAGAAGGGGTTGCTCTCAATACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCAAAAATTGAGATCTCTGGCAGTCCAACCGAAAAGGCTATTCTGTCATGGGCGGTTCATGATACAAAGATGGATATGGAGAAAGTGGTGAAGAGTTGTAGCATTCTCCATGTTGAGGCTTTCAATTCACAGAAGAAACGTAGTGGGGTTTTGATTAAGAGGAAGGCAGATAATACAGTCCAAGTACATTATAAAGGAGCTGCAGAGATGATACTAGCAATGTGTACAAGTTACTATGATGCCTCTGGAATTGTTAAGGATATGGATTACAATGAAAAAATGAACTTTGAGCAGATTATTCAAGGTATGGCAGCCAGCAGCCTCAGATGCATCGCATTCGCACATAAAGAAGTTGCTGCAGAGGAGCAAGTTGAAGGAGACCAGAAAGTTGCGCTAAAGGAAGATGGTTTGACCCTATTGGGACTTGTAGGTCTTAAAGATCCATGTCGTCCAGGAGTGAAGAAAGCAGTTGAAGACTGTCAATATGCAGGTGTGAACATCAAAATGATCACTGGCGATAATGTTTTCACTGCAAAAGCCATAGCTACTGAGTGTGGGATACTCAGGCCTGATCAGGACATGCTCGGAGCAGTCATAGAAGGTGTTGAATTTCGCAACTACACTCCAGAACAGAGAATGGAGAAGGTTGAGGCAATATGTGTAATGGCGAGGTCTTCTCCTTTTGATAAGCTTCTGATGGTACAATGCTTGAAGCAGAAAGGTCATGTAGTTGCAGTGACAGGTGATGGAACCAATGATGCACCAGCATTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGCACAGAAGTTGCTAAAGAGAGCTCGGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCTACAGTTTTGATGTGGGGGAGATGTGTGTACAATAATATCCAGAAGTTCATCCAATTCCAGCTCACTGTCAATGTTGCAGCTCTTGTGATCAACTTTGTAGCCGCAGTTTCAGCAGGTCAAGTCCCGTTAACAGCAGTTCAGTTATTGTGGGTGAACTTGATCATGGACACACTTGGAGCTCTTGCTCTTGCCACAGAAAAGCCCACAAAAGAACTCATGGAGAAGCCACCAGTGGGAAGGACAGCGCCTCTCATCACAAACGTCATGTGGAGGAACCTCTTGCCTCAAGCACTGTACCAGATAACAGTCCTCTTGATCTTGCAATTCAGGGGCAAAGCAATCTTTGGTGTCACTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGGTTTTTAATGAGTTCAATGCGAGGAAGCTAGAGAAGAAGAATGTCTTCAAGGGAATACACACCAACAAGTTATTTATGGGAATCATTGCAGCAACAATTATTCTCCAAGTGGTGATGGTGGAGTATCTTAAGAAATTTGCAGATACAGAGAGATTGAACTGGGGACAATGGGGTATATGCGTTGGCATTGCAGTCATCTCTTGGCCAATTGGCTGGGTGTTCAAGTCAATACCTGTTCCAGAGAAATCCTTTCTCAGTTATCTAAAGATGAAGAATTATAAGAGCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632 NABP PUF

Protein Analysis

1033

Amino Acids

113.28

Weight (kDa)

7.47

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	108 - 177	3.1e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	233 - 327	4.3e-20	P-type ATPase actuator domain
Hydrolase	PF00702	451 - 772	1.2e-13	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	491 - 662	8.3e-29	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	843 - 1012	1.1e-47	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25880 AT4G25880 AT4G25880 AT4G25880 AT4G25880
fragaria_vesca	FvH4_4g07600 FvH4_4g07600 FvH4_4g07600
malus_domestica	MD13G1245500.v1.1 MD16G1252800.v1.1
prunus_persica	Prupe.1G079300_v2.0.a1 Prupe.1G079300_v2.0.a1
pyrus_communis	pycom13g21640 pycom16g21410
rosa_chinensis	RchiOBHm_Chr4g0400221
rosa_laevigata	RLG00000009203
rosa_multiflora	Rmu_sc0004338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00345180
rosa_rugosa	Rorug04G0023900 Rorug04G0024000
rosa_samantha	Rh4AG098900 Rh4BG097200 Rh4CG108400 Rh4DG093900
rosa_wichuraiana	Rw4G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1725, 3087
AarI	CACCTGC	1 cut(s)	2012
AasI	GACNNNNNNGTC	2 cut(s)	1339, 1962
AatII	GACGTC	1 cut(s)	495
Acc36I	ACCTGC	2 cut(s)	2012, 2510
AccB1I	GGYRCC	2 cut(s)	238, 714
AccB7I	CCANNNNNTGG	2 cut(s)	322, 791
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	1208, 1586, 2508
AclWI	GGATC	2 cut(s)	49, 1967
AcoI	YGGCCR	4 cut(s)	117, 624, 808, 3011
AcsI	RAATTY	3 cut(s)	375, 2141, 2942
AcuI	CTGAAG	3 cut(s)	241, 414, 2382
AcyI	GRCGYC	3 cut(s)	492, 715, 1007
AfaI	GTAC	9 cut(s)	1311, 1360, 1375, 1517, 1719, 1759, 2235, 2435, 2702
AfiI	CCNNNNNNNGG	7 cut(s)	322, 455, 694, 791, 1396, 1648, 2639
AflII	CTTAAG	1 cut(s)	2936
AhdI	GACNNNNNGTC	1 cut(s)	664
AjiI	CACGTC	1 cut(s)	1022
AjnI	CCWGG	3 cut(s)	987, 1984, 2805
AleI	CACNNNNGTG	1 cut(s)	2795
AloI	GAACNNNNNNTCC	2 cut(s)	765, 797
Alw21I	GWGCWC	2 cut(s)	2366, 2587
Alw26I	GTCTC	3 cut(s)	436, 1325, 1905
AlwI	GGATC	2 cut(s)	49, 1967
AoxI	GGCC	6 cut(s)	117, 624, 808, 1520, 2099, 3011
ApoI	RAATTY	3 cut(s)	375, 2141, 2942
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
Asp700I	GAANNNNTTC	3 cut(s)	399, 884, 2852
AspLEI	GCGC	5 cut(s)	197, 526, 717, 1927, 2653
AsuHPI	GGTGA	7 cut(s)	761, 977, 1411, 1633, 2288, 2569, 2932
AsuII	TTCGAA	1 cut(s)	67
BalI	TGGCCA	3 cut(s)	119, 810, 3013
BanI	GGYRCC	2 cut(s)	238, 714
BanII	GRGCYC	3 cut(s)	334, 2366, 2587
BauI	CACGAG	1 cut(s)	994
BbsI	GAAGAC	4 cut(s)	402, 2013, 2199, 2845
Bbv12I	GWGCWC	2 cut(s)	2366, 2587
BcgI	CGANNNNNNTGC	2 cut(s)	1852, 1886
BciT130I	CCWGG	3 cut(s)	989, 1986, 2807
BciVI	GTATCC	1 cut(s)	2085
BclI	TGATCA	5 cut(s)	2040, 2104, 2376, 2493, 2565
BcoDI	GTCTC	3 cut(s)	436, 1325, 1905
BfaI	CTAG	9 cut(s)	6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
BfmI	CTRYAG	5 cut(s)	637, 1044, 1734, 1890, 2406
BfoI	RGCGCY	2 cut(s)	718, 2654
BfrI	CTTAAG	1 cut(s)	2936
BfuAI	ACCTGC	2 cut(s)	2012, 2510
BfuI	GTATCC	1 cut(s)	2085
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	2 cut(s)	301, 1545
Bme1390I	CCNGG	3 cut(s)	989, 1986, 2807
BmeRI	GACNNNNNGTC	1 cut(s)	664
BmgBI	CACGTC	1 cut(s)	1022
BmiI	GGNNCC	5 cut(s)	240, 427, 716, 2284, 2681
BmrFI	CCNGG	3 cut(s)	989, 1986, 2807
BmrI	ACTGGG	1 cut(s)	2977
BmsI	GCATC	7 cut(s)	54, 379, 918, 1762, 1850, 1872, 2281
BmuI	ACTGGG	1 cut(s)	2977
BpiI	GAAGAC	4 cut(s)	402, 2013, 2199, 2845
BplI	GAGNNNNNCTC	4 cut(s)	126, 158, 2194, 2226
BpmI	CTGGAG	2 cut(s)	671, 2142
Bpu14I	TTCGAA	1 cut(s)	67
BpuEI	CTTGAG	3 cut(s)	318, 389, 2676
BsaHI	GRCGYC	3 cut(s)	492, 715, 1007
BsaI	GGTCTC	3 cut(s)	436, 1325, 1905
BsaJI	CCNNGG	2 cut(s)	1119, 1335
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	7 cut(s)	322, 455, 694, 791, 1396, 1648, 2639
Bse1I	ACTGG	4 cut(s)	1510, 2050, 2636, 2972
Bse3DI	GCAATG	4 cut(s)	1311, 1758, 2892, 2994
BseBI	CCWGG	3 cut(s)	989, 1986, 2807
BseDI	CCNNGG	2 cut(s)	1119, 1335
BseGI	GGATG	6 cut(s)	521, 811, 933, 1129, 2389, 2454
BseLI	CCNNNNNNNGG	7 cut(s)	322, 455, 694, 791, 1396, 1648, 2639
BseMI	GCAATG	4 cut(s)	1311, 1758, 2892, 2994
BseMII	CTCAG	6 cut(s)	273, 890, 1870, 2073, 2110, 3076
BseNI	ACTGG	4 cut(s)	1510, 2050, 2636, 2972
BseRI	GAGGAG	1 cut(s)	1910
BseYI	CCCAGC	1 cut(s)	3021
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	6 cut(s)	119, 626, 810, 1522, 2101, 3013
BshNI	GGYRCC	2 cut(s)	238, 714
BsiHKAI	GWGCWC	2 cut(s)	2366, 2587
BslFI	GGGAC	3 cut(s)	1968, 2513, 2985
BslI	CCNNNNNNNGG	7 cut(s)	322, 455, 694, 791, 1396, 1648, 2639
BsmAI	GTCTC	3 cut(s)	436, 1325, 1905
BsmFI	GGGAC	3 cut(s)	1968, 2513, 2985
BsmI	GAATGC	3 cut(s)	103, 1635, 1868
BsnI	GGCC	6 cut(s)	119, 626, 810, 1522, 2101, 3013
Bso31I	GGTCTC	3 cut(s)	436, 1325, 1905
Bsp119I	TTCGAA	1 cut(s)	67
Bsp1286I	GDGCHC	3 cut(s)	334, 2366, 2587
Bsp1407I	TGTACA	4 cut(s)	1358, 1515, 1757, 2433
Bsp19I	CCATGG	1 cut(s)	1335
BspACI	CCGC	3 cut(s)	1208, 1586, 2508
BspANI	GGCC	6 cut(s)	119, 626, 810, 1522, 2101, 3013
BspCNI	CTCAG	6 cut(s)	274, 889, 1869, 2074, 2109, 3075
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	1591
BspLI	GGNNCC	5 cut(s)	240, 427, 716, 2284, 2681
BspMAI	CTGCAG	2 cut(s)	1738, 1894
BspMI	ACCTGC	2 cut(s)	2012, 2510
BspPI	GGATC	2 cut(s)	49, 1967
BspT104I	TTCGAA	1 cut(s)	67
BspT107I	GGYRCC	2 cut(s)	238, 714
BspTI	CTTAAG	1 cut(s)	2936
BspTNI	GGTCTC	3 cut(s)	436, 1325, 1905
BsrDI	GCAATG	4 cut(s)	1311, 1758, 2892, 2994
BsrGI	TGTACA	4 cut(s)	1358, 1515, 1757, 2433
BsrI	ACTGG	4 cut(s)	1510, 2050, 2636, 2972
BssECI	CCNNGG	2 cut(s)	1119, 1335
BssNI	GRCGYC	3 cut(s)	492, 715, 1007
BssSI	CACGAG	1 cut(s)	994
BssT1I	CCWWGG	1 cut(s)	1335
Bst2BI	CACGAG	1 cut(s)	994
Bst2UI	CCWGG	3 cut(s)	989, 1986, 2807
Bst4CI	ACNGT	9 cut(s)	581, 654, 1120, 1711, 2012, 2410, 2473, 2700, 2713
Bst6I	CTCTTC	3 cut(s)	86, 1277, 1619
BstACI	GRCGYC	3 cut(s)	492, 715, 1007
BstAFI	CTTAAG	1 cut(s)	2936
BstAUI	TGTACA	4 cut(s)	1358, 1515, 1757, 2433
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	30, 1849
BstDEI	CTNAG	8 cut(s)	282, 876, 1075, 1404, 1856, 2082, 2096, 3062
BstDSI	CCRYGG	2 cut(s)	1119, 1335
BstF5I	GGATG	6 cut(s)	521, 811, 933, 1129, 2389, 2454
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	2 cut(s)	718, 2654
BstHHI	GCGC	5 cut(s)	197, 526, 717, 1927, 2653
BstMAI	GTCTC	3 cut(s)	436, 1325, 1905
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 984, 1301, 1860, 2402, 2516
BstNI	CCWGG	3 cut(s)	989, 1986, 2807
BstNSI	RCATGY	2 cut(s)	32, 2116
BstSCI	CCNGG	3 cut(s)	987, 1984, 2805
BstSFI	CTRYAG	5 cut(s)	637, 1044, 1734, 1890, 2406
BstUI	CGCG	1 cut(s)	195
BstV2I	GAAGAC	4 cut(s)	402, 2013, 2199, 2845
BstX2I	RGATCY	3 cut(s)	301, 1545, 1972
BstXI	CCANNNNNNTGG	1 cut(s)	3021
BstYI	RGATCY	3 cut(s)	301, 1545, 1972
BsuI	GTATCC	1 cut(s)	2085
BsuRI	GGCC	6 cut(s)	119, 626, 810, 1522, 2101, 3013
BtgI	CCRYGG	2 cut(s)	1119, 1335
BtgZI	GCGATG	1 cut(s)	1849
BtrI	CACGTC	1 cut(s)	1022
BtsCI	GGATG	6 cut(s)	521, 811, 933, 1129, 2389, 2454
BtsI	GCAGTG	2 cut(s)	2061, 2274
BtsIMutI	CAGTG	8 cut(s)	279, 2043, 2061, 2274, 2469, 2643, 2696, 2757
BveI	ACCTGC	2 cut(s)	2012, 2510
Cac8I	GCNNGC	2 cut(s)	30, 1849
CciI	TCATGA	1 cut(s)	1591
CfoI	GCGC	5 cut(s)	197, 526, 717, 1927, 2653
CseI	GACGC	2 cut(s)	254, 1015
Csp6I	GTAC	9 cut(s)	1310, 1359, 1374, 1516, 1718, 1758, 2234, 2434, 2701
CviQI	GTAC	9 cut(s)	1310, 1359, 1374, 1516, 1718, 1758, 2234, 2434, 2701
DdeI	CTNAG	8 cut(s)	282, 876, 1075, 1404, 1856, 2082, 2096, 3062
DinI	GGCGCC	1 cut(s)	716
DrdI	GACNNNNNNGTC	2 cut(s)	1339, 1962
DriI	GACNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	2 cut(s)	1339, 1962
EaeI	YGGCCR	4 cut(s)	117, 624, 808, 3011
Eam1104I	CTCTTC	3 cut(s)	86, 1277, 1619
Eam1105I	GACNNNNNGTC	1 cut(s)	664
EarI	CTCTTC	3 cut(s)	86, 1277, 1619
Ecl136II	GAGCTC	2 cut(s)	2364, 2585
Eco130I	CCWWGG	1 cut(s)	1335
Eco147I	AGGCCT	2 cut(s)	1522, 2101
Eco24I	GRGCYC	3 cut(s)	334, 2366, 2587
Eco31I	GGTCTC	3 cut(s)	436, 1325, 1905
Eco53kI	GAGCTC	2 cut(s)	2364, 2585
Eco57I	CTGAAG	3 cut(s)	241, 414, 2382
EcoICRI	GAGCTC	2 cut(s)	2364, 2585
EcoRI	GAATTC	1 cut(s)	375
EcoRII	CCWGG	3 cut(s)	987, 1984, 2805
EcoT14I	CCWWGG	1 cut(s)	1335
EcoT22I	ATGCAT	1 cut(s)	1865
EcoT38I	GRGCYC	3 cut(s)	334, 2366, 2587
EgeI	GGCGCC	1 cut(s)	716
EheI	GGCGCC	1 cut(s)	716
ErhI	CCWWGG	1 cut(s)	1335
FalI	AAGNNNNNCTT	2 cut(s)	2837, 2869
FaqI	GGGAC	3 cut(s)	1968, 2513, 2985
FauNDI	CATATG	1 cut(s)	590
FbaI	TGATCA	5 cut(s)	2040, 2104, 2376, 2493, 2565
FokI	GGATG	6 cut(s)	528, 818, 940, 1136, 2396, 2441
FriOI	GRGCYC	3 cut(s)	334, 2366, 2587
FspBI	CTAG	9 cut(s)	6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
GlaI	GCGC	5 cut(s)	196, 525, 716, 1926, 2652
GsaI	CCCAGC	1 cut(s)	3025
GsuI	CTGGAG	2 cut(s)	671, 2142
HaeII	RGCGCY	2 cut(s)	718, 2654
HaeIII	GGCC	6 cut(s)	119, 626, 810, 1522, 2101, 3013
HgaI	GACGC	2 cut(s)	254, 1015
HhaI	GCGC	5 cut(s)	197, 526, 717, 1927, 2653
Hin1I	GRCGYC	3 cut(s)	492, 715, 1007
Hin6I	GCGC	5 cut(s)	195, 524, 715, 1925, 2651
HinP1I	GCGC	5 cut(s)	195, 524, 715, 1925, 2651
HincII	GTYRAC	1 cut(s)	2535
HindII	GTYRAC	1 cut(s)	2535
HindIII	AAGCTT	2 cut(s)	1440, 2222
HpaI	GTTAAC	1 cut(s)	2535
HphI	GGTGA	7 cut(s)	761, 977, 1411, 1633, 2288, 2569, 2932
Hpy166II	GTNNAC	6 cut(s)	1516, 1758, 2029, 2434, 2535, 2560
Hpy188I	TCNGA	8 cut(s)	260, 879, 927, 1380, 1859, 2120, 2229, 2368
Hpy8I	GTNNAC	6 cut(s)	1516, 1758, 2029, 2434, 2535, 2560
HpyCH4III	ACNGT	9 cut(s)	581, 654, 1120, 1711, 2012, 2410, 2473, 2700, 2713
HpyCH4IV	ACGT	5 cut(s)	84, 492, 1021, 1672, 2667
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 984, 1301, 1860, 2402, 2516
HpyF3I	CTNAG	8 cut(s)	282, 876, 1075, 1404, 1856, 2082, 2096, 3062
HpySE526I	ACGT	5 cut(s)	84, 492, 1021, 1672, 2667
Hsp92I	GRCGYC	3 cut(s)	492, 715, 1007
HspAI	GCGC	5 cut(s)	195, 524, 715, 1925, 2651
KasI	GGCGCC	1 cut(s)	714
Ksp22I	TGATCA	5 cut(s)	2040, 2104, 2376, 2493, 2565
KspAI	GTTAAC	1 cut(s)	2535
LmnI	GCTCC	7 cut(s)	42, 202, 318, 1730, 1897, 2120, 2582
LweI	GCATC	7 cut(s)	54, 379, 918, 1762, 1850, 1872, 2281
MaeI	CTAG	9 cut(s)	6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
MaeII	ACGT	5 cut(s)	84, 492, 1021, 1672, 2667
MfeI	CAATTG	2 cut(s)	1215, 3015
MflI	RGATCY	3 cut(s)	301, 1545, 1972
MhlI	GDGCHC	3 cut(s)	334, 2366, 2587
MlsI	TGGCCA	3 cut(s)	119, 810, 3013
MluNI	TGGCCA	3 cut(s)	119, 810, 3013
Mly113I	GGCGCC	1 cut(s)	715
MlyI	GAGTC	2 cut(s)	270, 1252
MmeI	TCCRAC	4 cut(s)	453, 551, 905, 1583
Mox20I	TGGCCA	3 cut(s)	119, 810, 3013
Mph1103I	ATGCAT	1 cut(s)	1865
MroXI	GAANNNNTTC	3 cut(s)	399, 884, 2852
MscI	TGGCCA	3 cut(s)	119, 810, 3013
MseI	TTAA	9 cut(s)	81, 503, 560, 1689, 1788, 1968, 2534, 2814, 2937
MslI	CAYNNNNRTG	2 cut(s)	2036, 2795
Msp20I	TGGCCA	3 cut(s)	119, 810, 3013
MspA1I	CMGCKG	2 cut(s)	788, 1205
MspCI	CTTAAG	1 cut(s)	2936
MspR9I	CCNGG	3 cut(s)	989, 1986, 2807
MunI	CAATTG	2 cut(s)	1215, 3015
Mva1269I	GAATGC	3 cut(s)	103, 1635, 1868
MvaI	CCWGG	3 cut(s)	989, 1986, 2807
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	6 cut(s)	116, 984, 1301, 1860, 2402, 2516
NarI	GGCGCC	1 cut(s)	715
NcoI	CCATGG	1 cut(s)	1335
NdeI	CATATG	1 cut(s)	590
NlaIV	GGNNCC	5 cut(s)	240, 427, 716, 2284, 2681
NmuCI	GTSAC	7 cut(s)	493, 851, 934, 1255, 1399, 2269, 2755
NsiI	ATGCAT	1 cut(s)	1865
NspI	RCATGY	2 cut(s)	32, 2116
NspV	TTCGAA	1 cut(s)	67
OliI	CACNNNNGTG	1 cut(s)	2795
PaeI	GCATGC	1 cut(s)	32
PagI	TCATGA	1 cut(s)	1591
PaqCI	CACCTGC	1 cut(s)	2012
PceI	AGGCCT	2 cut(s)	1522, 2101
PctI	GAATGC	3 cut(s)	103, 1635, 1868
PdmI	GAANNNNTTC	3 cut(s)	399, 884, 2852
PfeI	GAWTC	9 cut(s)	227, 411, 543, 830, 880, 1424, 1532, 2335, 2889
PflMI	CCANNNNNTGG	2 cut(s)	322, 791
PfoI	TCCNGGA	1 cut(s)	1984
PleI	GAGTC	2 cut(s)	270, 1252
PluTI	GGCGCC	1 cut(s)	718
PpsI	GAGTC	2 cut(s)	270, 1252
PsiI	TTATAA	2 cut(s)	1725, 3087
Psp124BI	GAGCTC	2 cut(s)	2366, 2587
Psp6I	CCWGG	3 cut(s)	987, 1984, 2805
PspFI	CCCAGC	1 cut(s)	3021
PspGI	CCWGG	3 cut(s)	987, 1984, 2805
PspN4I	GGNNCC	5 cut(s)	240, 427, 716, 2284, 2681
PstI	CTGCAG	2 cut(s)	1738, 1894
PsuI	RGATCY	3 cut(s)	301, 1545, 1972
PvuII	CAGCTG	2 cut(s)	788, 1205
RsaI	GTAC	9 cut(s)	1311, 1360, 1375, 1517, 1719, 1759, 2235, 2435, 2702
RsaNI	GTAC	9 cut(s)	1310, 1359, 1374, 1516, 1718, 1758, 2234, 2434, 2701
RseI	CAYNNNNRTG	2 cut(s)	2036, 2795
SacI	GAGCTC	2 cut(s)	2366, 2587
SaqAI	TTAA	9 cut(s)	81, 503, 560, 1689, 1788, 1968, 2534, 2814, 2937
SchI	GAGTC	2 cut(s)	270, 1252
ScrFI	CCNGG	3 cut(s)	989, 1986, 2807
SduI	GDGCHC	3 cut(s)	334, 2366, 2587
SfaNI	GCATC	7 cut(s)	54, 379, 918, 1762, 1850, 1872, 2281
SfcI	CTRYAG	5 cut(s)	637, 1044, 1734, 1890, 2406
SfoI	GGCGCC	1 cut(s)	716
SfuI	TTCGAA	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	2036, 2795
SmlI	CTYRAG	4 cut(s)	333, 404, 2691, 2936
SmoI	CTYRAG	4 cut(s)	333, 404, 2691, 2936
SphI	GCATGC	1 cut(s)	32
SseBI	AGGCCT	2 cut(s)	1522, 2101
SsiI	CCGC	3 cut(s)	1208, 1586, 2508
SspDI	GGCGCC	1 cut(s)	714
SspMI	CTAG	9 cut(s)	6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
SstI	GAGCTC	2 cut(s)	2366, 2587
StuI	AGGCCT	2 cut(s)	1522, 2101
StyD4I	CCNGG	3 cut(s)	987, 1984, 2805
StyI	CCWWGG	1 cut(s)	1335
TaaI	ACNGT	9 cut(s)	581, 654, 1120, 1711, 2012, 2410, 2473, 2700, 2713
TaiI	ACGT	5 cut(s)	87, 495, 1024, 1675, 2670
TaqI	TCGA	7 cut(s)	48, 67, 354, 414, 728, 1099, 1470
TatI	WGTACW	5 cut(s)	1358, 1515, 1717, 1757, 2433
TauI	GCSGC	1 cut(s)	2510
TfiI	GAWTC	9 cut(s)	227, 411, 543, 830, 880, 1424, 1532, 2335, 2889
Tru1I	TTAA	9 cut(s)	81, 503, 560, 1689, 1788, 1968, 2534, 2814, 2937
Tru9I	TTAA	9 cut(s)	81, 503, 560, 1689, 1788, 1968, 2534, 2814, 2937
TscAI	CASTG	8 cut(s)	286, 2050, 2068, 2274, 2476, 2643, 2703, 2764
TseFI	GTSAC	7 cut(s)	493, 851, 934, 1255, 1399, 2269, 2755
Tsp45I	GTSAC	7 cut(s)	493, 851, 934, 1255, 1399, 2269, 2755
TspGWI	ACGGA	1 cut(s)	1327
TspRI	CASTG	8 cut(s)	286, 2050, 2068, 2274, 2476, 2643, 2703, 2764
Van91I	CCANNNNNTGG	2 cut(s)	322, 791
Vha464I	CTTAAG	1 cut(s)	2936
XapI	RAATTY	3 cut(s)	375, 2141, 2942
XbaI	TCTAGA	2 cut(s)	131, 1024
XceI	RCATGY	2 cut(s)	32, 2116
XmnI	GAANNNNTTC	3 cut(s)	399, 884, 2852
XspI	CTAG	9 cut(s)	6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
ZraI	GACGTC	1 cut(s)	493
Zsp2I	ATGCAT	1 cut(s)	1865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.