Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007034

Physical Location & Seq

Genomic Coordinates Forward (+)

21264148 .. 21272632

Gene Structure 8485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2475 bp

ATGGCGACTGAGAGTCCAATTAGAATGTCAGAAACTGGTGGAAACTGGGGTTCCCATAAGAAGCCGGCAAAACTTGCATCATCATCTGCTAATATGACAGCAGAGGAGTTGAAATTGCTTCTGAGAGACCATAGGTTTCATAGCAGCAGAAAGGATGTTGCCCCCAATCGAAGTGGAAGTGCACCCCCAAGTATGGAGGGCTCATTTTTGGCCATTAATAATCTGATATCCCAGCAGGACTCTGGCATGACTGGAAGCTTGGCTAGTTTAACTAGTGTTATTGAAAGGTGCGAGTCTGAGGAGCAACTGCGTTCAGATCCAGCTTATCTGGCTTATTACTGTGCCAATGTTAATCTGAATCCAAGACTTCCTTCTCCCCTTATCTCATGGGAGAATCGACGTCTGGCACGCCATATCGGTAGTTTCAGTCCAAACTTGGGACCCGTTGATGACAGTGGTAATGGTTCATTGCATATGTCTCCAGGACTACTGCCTACACACGAGGAAGAGTCAGAGGATGATCAGACACCTCAACAGACTTCTAATGATTGGGTAGATCAGACAAGTTCTGGAGAGGAAGCAGCTCAATTGATAGGACAACAGAAAAATGAAGATTCTTGTGGGTCTACTTCACCTGTAGATAATCAATCACATACCTCAAGCAATGGGGTACCTGAGGAGTTTACTCAGAGTGCTGTTTCCAATTCCTTGCATGATCTCCCTAGGCCCAATGTAGATGAAGAACGTGCAGCTGATACAGTGCTTTCACTAAATGATGAAGCCTCATCCAGTCCTGTTGCAATTTCGTCGTCTCATGTTTATAGCAGGAGTACAGGTGTTAATGATGCAGATGTCTCCCTTGTTGAATCTGGAATGAAGTCTCTTAATGTATCGAACATGCCAGAAAATCAAAGGAATCAAGTACAGTGGCCGCCCAGCTACCAGAATAATTTCCTGCAATACCAGATACAGCAACAGCAAATCAATTTATGCCAAGTTCAAAATGCCACATCTCAGATAACTCCTCAAGGAGCTCACTGCACATATATTGGCTTGGATCACTATCACCCTAATACCTCCAAATTTGCAGCGGACGCACAGCCGGTACTCCAGACATCAGGGTTCGCACATCCACTTTATGCAAACGCAGCAGCCTACACGAGTGCAACACATCCGTATTATTCAAATTTTCAGGCACAGAGCTTTGTTTCTCCACAATATGTAGGTGGATATGCTTTAAACCCCCCTGGTTTTTCTCCATATGTTGGTGGATATCATCCTCCAGGGGCTGTTCCTGTTGTTGTTGAGGGAACTGTGGGTTCAAGCTTTAATACTCGAACATCTGTGGGAAGCATTTCACCTGGGGCTGATGTGCAACATATAAGCAAGTCATATGGGCAGCCTGGGTTTCCCCTGCAAACTTCTTATTCCGATCCTATGTATATGCAATACTATCAACAGCCGTTTGTGGAGTCATATGGTGTTTCTGGCCAGTATGCTCCATTGGCATCTAGAGGTGGTCTTGACTTAAACAAAGCGTCCAATCATGCCACTAGTTTGGATGACCACAAAATCCAACATCCGAGGAATGTAGGGCCGGGGAATTTGAACTCACAAAGAGGACCACTAAGTGCCAGCTATTATGGAAGTGCACCAAATGTTGGTGTTTTGATGCAGTATCCTACCTCACCCCTAAATAGTCCTGTTCTGCCAACATCATCCATAAGTTCAGGAAGAAATACTGGCTTATATCATGGATGGACAGGGCACCGAGGCTTTGAGAGTCTTCATGACCCCAAAATTTATAATTTTCTTGAGGAGTTGAAATCTGGCAAAGGCCGCAGATTTGAGCTATCTGATATCACAGGACATATTGTTGAATTTAGTGCTGATCAACATGGGAGTCGATTTATCCAGCAGAAGTTGGAAAACTGTAGTATTGAAGAGAAGGCTTCTGTATTCAGAGAAGTTCTCCCACATGCTTGTCAATTAATGACTGATGTTTTTGGTAACTATGTGATTCAAAAGTTTTTTGAGTATGGAACCCCTCAGCAAAGGAAGGATCTTGCCAATCAACTTTCAGGCCAAATTTTGCCTCTAAGTCTGCAGATGTACGGCTGTCGTGTAATCCAAAAGGCACTTGATGTGATTGAGCTTGAACAGAAAGCAAGGCTTGTACATGAGTTGGATGGAAATGTTATGAGATGTGTTCGTGACCAAAATGGAAACCATGTCATACAAAAGTGTATTGAGAGCATCCCAACAGAAAAGATTGGGTTTATAATATCTGCTTTCCATGATCAAGTTGCAACACTTTCAATGCATCCCTATGGTTGCCGAGTTATACAGAGAGTTCTGGAGCATTGTACAAATGAGTTGCAATGCCAGTTTATAGTTGATGAAATTTTGGACTCTGTGCATGCTCTTGCTCAGGACCAGTATGGCAATTATGTCTCCCAGGTTGGTATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632 NABP PUF

Protein Analysis

824

Amino Acids

90.22

Weight (kDa)

5.55

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF	PF00806	624 - 658	1.6e-10	Pumilio-family RNA binding repeat
PUF	PF00806	660 - 693	2.2e-09	Pumilio-family RNA binding repeat
PUF	PF00806	696 - 729	3.9e-09	Pumilio-family RNA binding repeat
PUF	PF00806	768 - 803	1.4e-13	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25880 AT4G25880 AT4G25880 AT4G25880 AT4G25880
fragaria_vesca	FvH4_4g07600 FvH4_4g07600 FvH4_4g07600
malus_domestica	MD13G1245500.v1.1 MD16G1252800.v1.1
prunus_persica	Prupe.1G079300_v2.0.a1 Prupe.1G079300_v2.0.a1
pyrus_communis	pycom13g21640 pycom16g21410
rosa_chinensis	RchiOBHm_Chr4g0400221
rosa_laevigata	RLG00000009203
rosa_multiflora	Rmu_sc0004338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00345180
rosa_rugosa	Rorug04G0023900 Rorug04G0024000
rosa_samantha	Rh4AG098900 Rh4BG097200 Rh4CG108400 Rh4DG093900
rosa_wichuraiana	Rw4G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1806, 2282
AatII	GACGTC	1 cut(s)	403
Acc65I	GGTACC	1 cut(s)	670
AccB1I	GGYRCC	2 cut(s)	670, 1767
AccB7I	CCANNNNNTGG	2 cut(s)	1265, 1661
AccI	GTMKAC	1 cut(s)	626
AciI	CCGC	3 cut(s)	932, 1091, 1840
AclWI	GGATC	4 cut(s)	311, 1065, 1427, 2070
AcoI	YGGCCR	3 cut(s)	210, 929, 1489
AcsI	RAATTY	7 cut(s)	1082, 1186, 1603, 1800, 1880, 2088, 2403
AcyI	GRCGYC	1 cut(s)	400
AdeI	CACNNNGTG	1 cut(s)	1631
AfaI	GTAC	7 cut(s)	672, 832, 924, 1107, 2114, 2178, 2368
AfiI	CCNNNNNNNGG	4 cut(s)	193, 437, 1265, 1661
AhdI	GACNNNNNGTC	1 cut(s)	12
AhlI	ACTAGT	2 cut(s)	272, 1553
AjnI	CCWGG	6 cut(s)	481, 1246, 1282, 1360, 1402, 2457
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
Alw21I	GWGCWC	3 cut(s)	184, 1036, 1654
Alw26I	GTCTC	6 cut(s)	120, 483, 816, 859, 885, 2458
Alw44I	GTGCAC	2 cut(s)	180, 1650
AlwI	GGATC	4 cut(s)	311, 1065, 1427, 2070
AlwNI	CAGNNNCTG	2 cut(s)	35, 1289
AoxI	GGCC	7 cut(s)	210, 725, 929, 1489, 1595, 1837, 2083
ApaLI	GTGCAC	2 cut(s)	180, 1650
ApeKI	GCWGC	7 cut(s)	144, 581, 749, 1088, 1148, 1151, 1399
ApoI	RAATTY	7 cut(s)	1082, 1186, 1603, 1800, 1880, 2088, 2403
AseI	ATTAAT	2 cut(s)	216, 1991
Asp700I	GAANNNNTTC	2 cut(s)	950, 1354
Asp718I	GGTACC	1 cut(s)	670
AspA2I	CCTAGG	1 cut(s)	722
AspS9I	GGNCC	5 cut(s)	440, 726, 1595, 1622, 2434
AsuC2I	CCSGG	1 cut(s)	1599
AsuHPI	GGTGA	4 cut(s)	624, 1058, 1350, 1680
AvaII	GGWCC	3 cut(s)	440, 1622, 2434
AvrII	CCTAGG	1 cut(s)	722
AxyI	CCTNAGG	1 cut(s)	675
BaeGI	GKGCMC	3 cut(s)	184, 1654, 1770
BalI	TGGCCA	2 cut(s)	212, 1491
BanI	GGYRCC	2 cut(s)	670, 1767
BanII	GRGCYC	2 cut(s)	203, 1036
BauI	CACGAG	2 cut(s)	500, 1159
BbsI	GAAGAC	1 cut(s)	1778
Bbv12I	GWGCWC	3 cut(s)	184, 1036, 1654
BbvCI	CCTCAGC	1 cut(s)	2049
BbvI	GCAGC	7 cut(s)	156, 593, 761, 1100, 1160, 1163, 1411
BccI	CCATC	2 cut(s)	1752, 2183
BceAI	ACGGC	2 cut(s)	1447, 2131
BcgI	CGANNNNNNTGC	2 cut(s)	789, 823
BciT130I	CCWGG	6 cut(s)	483, 1248, 1284, 1362, 1404, 2459
BciVI	GTATCC	1 cut(s)	1689
BclI	TGATCA	3 cut(s)	520, 1891, 2299
BcnI	CCSGG	1 cut(s)	1599
BcoDI	GTCTC	6 cut(s)	120, 483, 816, 859, 885, 2458
BcuI	ACTAGT	2 cut(s)	272, 1553
BfaI	CTAG	5 cut(s)	264, 273, 723, 1512, 1554
BfmI	CTRYAG	3 cut(s)	636, 1933, 2105
BfuI	GTATCC	1 cut(s)	1689
BisI	GCNGC	9 cut(s)	145, 582, 750, 932, 1089, 1149, 1152, 1400, 1840
BlnI	CCTAGG	1 cut(s)	722
BlsI	GCNGC	9 cut(s)	146, 583, 751, 933, 1090, 1150, 1153, 1401, 1841
Bme1390I	CCNGG	7 cut(s)	483, 1248, 1284, 1362, 1404, 1599, 2459
Bme18I	GGWCC	3 cut(s)	440, 1622, 2434
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmgT120I	GGNCC	5 cut(s)	440, 726, 1595, 1622, 2434
BmiI	GGNNCC	6 cut(s)	52, 441, 442, 672, 1769, 2044
BmrFI	CCNGG	7 cut(s)	483, 1248, 1284, 1362, 1404, 1599, 2459
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	6 cut(s)	86, 835, 1517, 1662, 2265, 2332
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	1778
BplI	GAGNNNNNCTC	2 cut(s)	1956, 1988
BpmI	CTGGAG	5 cut(s)	465, 591, 1094, 1266, 2378
Bpu10I	CCTNAGC	2 cut(s)	2049, 2430
BpuEI	CTTGAG	3 cut(s)	643, 1011, 1835
BpuMI	CCSGG	1 cut(s)	1599
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaHI	GRCGYC	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	9 cut(s)	722, 1246, 1283, 1361, 1403, 1583, 1598, 1771, 2457
BsaXI	ACNNNNNCTCC	2 cut(s)	820, 850
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 437, 1265, 1661
Bse118I	RCCGGY	2 cut(s)	64, 1102
Bse1I	ACTGG	8 cut(s)	40, 50, 256, 789, 1492, 1747, 2386, 2437
Bse21I	CCTNAGG	1 cut(s)	675
Bse3DI	GCAATG	3 cut(s)	467, 670, 2387
Bse8I	GATNNNNATC	1 cut(s)	1062
BseBI	CCWGG	6 cut(s)	483, 1248, 1284, 1362, 1404, 2459
BseDI	CCNNGG	9 cut(s)	722, 1246, 1283, 1361, 1403, 1583, 1598, 1771, 2457
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	4 cut(s)	193, 437, 1265, 1661
BseMI	GCAATG	3 cut(s)	467, 670, 2387
BseMII	CTCAG	7 cut(s)	113, 288, 666, 701, 1028, 2063, 2444
BseNI	ACTGG	8 cut(s)	40, 50, 256, 789, 1492, 1747, 2386, 2437
BseRI	GAGGAG	5 cut(s)	119, 314, 692, 1014, 1832
BseSI	GKGCMC	3 cut(s)	184, 1654, 1770
BseXI	GCAGC	7 cut(s)	156, 593, 761, 1100, 1160, 1163, 1411
BseYI	CCCAGC	2 cut(s)	231, 935
BsgI	GTGCAG	2 cut(s)	768, 1024
BshFI	GGCC	7 cut(s)	212, 727, 931, 1491, 1597, 1839, 2085
BshNI	GGYRCC	2 cut(s)	670, 1767
BsiHKAI	GWGCWC	3 cut(s)	184, 1036, 1654
BsiSI	CCGG	3 cut(s)	65, 1103, 1598
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	4 cut(s)	193, 437, 1265, 1661
BsmAI	GTCTC	6 cut(s)	120, 483, 816, 859, 885, 2458
BsmBI	CGTCTC	1 cut(s)	816
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	7 cut(s)	212, 727, 931, 1491, 1597, 1839, 2085
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	5 cut(s)	184, 203, 1036, 1654, 1770
Bsp1407I	TGTACA	2 cut(s)	2176, 2366
Bsp143I	GATC	9 cut(s)	316, 520, 556, 715, 1057, 1432, 1891, 2062, 2299
BspACI	CCGC	3 cut(s)	932, 1091, 1840
BspANI	GGCC	7 cut(s)	212, 727, 931, 1491, 1597, 1839, 2085
BspCNI	CTCAG	7 cut(s)	114, 289, 667, 700, 1027, 2062, 2443
BspHI	TCATGA	1 cut(s)	1789
BspLI	GGNNCC	6 cut(s)	52, 441, 442, 672, 1769, 2044
BspMAI	CTGCAG	1 cut(s)	2109
BspPI	GGATC	4 cut(s)	311, 1065, 1427, 2070
BspT107I	GGYRCC	2 cut(s)	670, 1767
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	3 cut(s)	467, 670, 2387
BsrFI	RCCGGY	2 cut(s)	64, 1102
BsrGI	TGTACA	2 cut(s)	2176, 2366
BsrI	ACTGG	8 cut(s)	40, 50, 256, 789, 1492, 1747, 2386, 2437
BssAI	RCCGGY	2 cut(s)	64, 1102
BssECI	CCNNGG	9 cut(s)	722, 1246, 1283, 1361, 1403, 1583, 1598, 1771, 2457
BssMI	GATC	9 cut(s)	316, 520, 556, 715, 1057, 1432, 1891, 2062, 2299
BssNI	GRCGYC	1 cut(s)	400
BssSI	CACGAG	2 cut(s)	500, 1159
BssT1I	CCWWGG	1 cut(s)	722
Bst2BI	CACGAG	2 cut(s)	500, 1159
Bst2UI	CCWGG	6 cut(s)	483, 1248, 1284, 1362, 1404, 2459
Bst4CI	ACNGT	6 cut(s)	341, 455, 760, 927, 1315, 1934
Bst6I	CTCTTC	2 cut(s)	501, 1938
BstACI	GRCGYC	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstAUI	TGTACA	2 cut(s)	2176, 2366
BstC8I	GCNNGC	4 cut(s)	66, 409, 1636, 2421
BstKTI	GATC	9 cut(s)	319, 523, 559, 718, 1060, 1435, 1894, 2065, 2302
BstMAI	GTCTC	6 cut(s)	120, 483, 816, 859, 885, 2458
BstMBI	GATC	9 cut(s)	316, 520, 556, 715, 1057, 1432, 1891, 2062, 2299
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 329, 1094, 1148, 1505, 1839
BstNI	CCWGG	6 cut(s)	483, 1248, 1284, 1362, 1404, 2459
BstNSI	RCATGY	3 cut(s)	901, 1982, 2423
BstSCI	CCNGG	7 cut(s)	481, 1246, 1282, 1360, 1402, 1597, 2457
BstSFI	CTRYAG	3 cut(s)	636, 1933, 2105
BstSLI	GKGCMC	3 cut(s)	184, 1654, 1770
BstV1I	GCAGC	7 cut(s)	156, 593, 761, 1100, 1160, 1163, 1411
BstV2I	GAAGAC	1 cut(s)	1778
BstX2I	RGATCY	2 cut(s)	316, 2062
BstXI	CCANNNNNNTGG	1 cut(s)	1558
BstYI	RGATCY	2 cut(s)	316, 2062
Bsu36I	CCTNAGG	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	1689
BsuRI	GGCC	7 cut(s)	212, 727, 931, 1491, 1597, 1839, 2085
BtsI	GCAGTG	1 cut(s)	1036
BtsIMutI	CAGTG	4 cut(s)	460, 765, 932, 1036
Cac8I	GCNNGC	4 cut(s)	66, 409, 1636, 2421
CaiI	CAGNNNCTG	2 cut(s)	35, 1289
CciI	TCATGA	1 cut(s)	1789
Cfr10I	RCCGGY	2 cut(s)	64, 1102
Cfr13I	GGNCC	5 cut(s)	440, 726, 1595, 1622, 2434
CseI	GACGC	2 cut(s)	1103, 1527
Csp6I	GTAC	7 cut(s)	671, 831, 923, 1106, 2113, 2177, 2367
CspCI	CAANNNNNGTGG	4 cut(s)	154, 189, 908, 943
CviQI	GTAC	7 cut(s)	671, 831, 923, 1106, 2113, 2177, 2367
DpnI	GATC	9 cut(s)	318, 522, 558, 717, 1059, 1434, 1893, 2064, 2301
DpnII	GATC	9 cut(s)	316, 520, 556, 715, 1057, 1432, 1891, 2062, 2299
DraI	TTTAAA	1 cut(s)	1239
DraIII	CACNNNGTG	1 cut(s)	1631
DriI	GACNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	3 cut(s)	210, 929, 1489
Eam1104I	CTCTTC	2 cut(s)	501, 1938
Eam1105I	GACNNNNNGTC	1 cut(s)	12
EarI	CTCTTC	2 cut(s)	501, 1938
Ecl136II	GAGCTC	1 cut(s)	1034
Eco130I	CCWWGG	1 cut(s)	722
Eco24I	GRGCYC	2 cut(s)	203, 1036
Eco31I	GGTCTC	1 cut(s)	120
Eco32I	GATATC	3 cut(s)	228, 1274, 1861
Eco47I	GGWCC	3 cut(s)	440, 1622, 2434
Eco53kI	GAGCTC	1 cut(s)	1034
Eco81I	CCTNAGG	1 cut(s)	675
EcoICRI	GAGCTC	1 cut(s)	1034
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	6 cut(s)	481, 1246, 1282, 1360, 1402, 2457
EcoRV	GATATC	3 cut(s)	228, 1274, 1861
EcoT14I	CCWWGG	1 cut(s)	722
EcoT22I	ATGCAT	1 cut(s)	2325
EcoT38I	GRGCYC	2 cut(s)	203, 1036
ErhI	CCWWGG	1 cut(s)	722
Esp3I	CGTCTC	1 cut(s)	816
FalI	AAGNNNNNCTT	4 cut(s)	355, 387, 2157, 2189
FaqI	GGGAC	1 cut(s)	453
FauNDI	CATATG	4 cut(s)	474, 1261, 1393, 1477
FbaI	TGATCA	3 cut(s)	520, 1891, 2299
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	9 cut(s)	145, 582, 750, 932, 1089, 1149, 1152, 1400, 1840
FriOI	GRGCYC	2 cut(s)	203, 1036
Fsp4HI	GCNGC	9 cut(s)	145, 582, 750, 932, 1089, 1149, 1152, 1400, 1840
FspBI	CTAG	5 cut(s)	264, 273, 723, 1512, 1554
GluI	GCNGC	9 cut(s)	145, 582, 750, 932, 1089, 1149, 1152, 1400, 1840
GsaI	CCCAGC	2 cut(s)	235, 939
GsuI	CTGGAG	5 cut(s)	465, 591, 1094, 1266, 2378
HaeIII	GGCC	7 cut(s)	212, 727, 931, 1491, 1597, 1839, 2085
HapII	CCGG	3 cut(s)	65, 1103, 1598
HgaI	GACGC	2 cut(s)	1103, 1527
Hin1I	GRCGYC	1 cut(s)	400
HindIII	AAGCTT	2 cut(s)	256, 1324
HpaII	CCGG	3 cut(s)	65, 1103, 1598
HphI	GGTGA	4 cut(s)	624, 1058, 1350, 1680
Hpy166II	GTNNAC	4 cut(s)	182, 627, 684, 1652
Hpy8I	GTNNAC	4 cut(s)	182, 627, 684, 1652
Hpy99I	CGWCG	2 cut(s)	402, 811
HpyAV	CCTTC	3 cut(s)	381, 1942, 2053
HpyCH4III	ACNGT	6 cut(s)	341, 455, 760, 927, 1315, 1934
HpyCH4IV	ACGT	2 cut(s)	400, 745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 329, 1094, 1148, 1505, 1839
HpySE526I	ACGT	2 cut(s)	400, 745
Hsp92I	GRCGYC	1 cut(s)	400
KflI	GGGWCCC	1 cut(s)	440
KpnI	GGTACC	1 cut(s)	674
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Ksp22I	TGATCA	3 cut(s)	520, 1891, 2299
Kzo9I	GATC	9 cut(s)	316, 520, 556, 715, 1057, 1432, 1891, 2062, 2299
LmnI	GCTCC	4 cut(s)	301, 1031, 1504, 2359
Lsp1109I	GCAGC	7 cut(s)	156, 593, 761, 1100, 1160, 1163, 1411
LweI	GCATC	6 cut(s)	86, 835, 1517, 1662, 2265, 2332
MaeI	CTAG	5 cut(s)	264, 273, 723, 1512, 1554
MaeII	ACGT	2 cut(s)	400, 745
MaeIII	GTNAC	2 cut(s)	2009, 2213
MalI	GATC	9 cut(s)	318, 522, 558, 717, 1059, 1434, 1893, 2064, 2301
MboI	GATC	9 cut(s)	316, 520, 556, 715, 1057, 1432, 1891, 2062, 2299
MboII	GAAGA	6 cut(s)	518, 623, 752, 1746, 1778, 1955
MfeI	CAATTG	1 cut(s)	587
MflI	RGATCY	2 cut(s)	316, 2062
MhlI	GDGCHC	5 cut(s)	184, 203, 1036, 1654, 1770
MlsI	TGGCCA	2 cut(s)	212, 1491
MluNI	TGGCCA	2 cut(s)	212, 1491
MlyI	GAGTC	8 cut(s)	22, 233, 302, 518, 1481, 1792, 1912, 2405
MmeI	TCCRAC	3 cut(s)	1600, 1905, 2166
Mox20I	TGGCCA	2 cut(s)	212, 1491
Mph1103I	ATGCAT	1 cut(s)	2325
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	2 cut(s)	950, 1354
MscI	TGGCCA	2 cut(s)	212, 1491
MseI	TTAA	9 cut(s)	216, 269, 351, 840, 885, 1238, 1329, 1529, 1991
MslI	CAYNNNNRTG	1 cut(s)	2328
Msp20I	TGGCCA	2 cut(s)	212, 1491
MspA1I	CMGCKG	2 cut(s)	752, 1091
MspI	CCGG	3 cut(s)	65, 1103, 1598
MspR9I	CCNGG	7 cut(s)	483, 1248, 1284, 1362, 1404, 1599, 2459
MunI	CAATTG	1 cut(s)	587
MvaI	CCWGG	6 cut(s)	483, 1248, 1284, 1362, 1404, 2459
MwoI	GCNNNNNNNGC	6 cut(s)	74, 329, 1094, 1148, 1505, 1839
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	1599
NdeI	CATATG	4 cut(s)	474, 1261, 1393, 1477
NdeII	GATC	9 cut(s)	316, 520, 556, 715, 1057, 1432, 1891, 2062, 2299
NgoMIV	GCCGGC	1 cut(s)	64
NlaIV	GGNNCC	6 cut(s)	52, 441, 442, 672, 1769, 2044
NmeAIII	GCCGAG	1 cut(s)	2363
NmuCI	GTSAC	1 cut(s)	2213
NsiI	ATGCAT	1 cut(s)	2325
NspI	RCATGY	3 cut(s)	901, 1982, 2423
PaeI	GCATGC	1 cut(s)	2423
PagI	TCATGA	1 cut(s)	1789
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	2 cut(s)	950, 1354
PfeI	GAWTC	6 cut(s)	358, 394, 614, 866, 916, 2020
PflMI	CCANNNNNTGG	2 cut(s)	1265, 1661
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	9 cut(s)	146, 583, 751, 933, 1090, 1150, 1153, 1401, 1841
PleI	GAGTC	8 cut(s)	21, 233, 301, 517, 1480, 1791, 1911, 2405
PpsI	GAGTC	8 cut(s)	21, 233, 301, 517, 1480, 1791, 1911, 2405
PpuMI	RGGWCCY	1 cut(s)	440
PshBI	ATTAAT	2 cut(s)	216, 1991
PsiI	TTATAA	2 cut(s)	1806, 2282
Psp124BI	GAGCTC	1 cut(s)	1036
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	6 cut(s)	481, 1246, 1282, 1360, 1402, 2457
PspFI	CCCAGC	2 cut(s)	231, 935
PspGI	CCWGG	6 cut(s)	481, 1246, 1282, 1360, 1402, 2457
PspN4I	GGNNCC	6 cut(s)	52, 441, 442, 672, 1769, 2044
PspPI	GGNCC	5 cut(s)	440, 726, 1595, 1622, 2434
PspPPI	RGGWCCY	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	2109
PstNI	CAGNNNCTG	2 cut(s)	35, 1289
PsuI	RGATCY	2 cut(s)	316, 2062
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	7 cut(s)	672, 832, 924, 1107, 2114, 2178, 2368
RsaNI	GTAC	7 cut(s)	671, 831, 923, 1106, 2113, 2177, 2367
RseI	CAYNNNNRTG	1 cut(s)	2328
SacI	GAGCTC	1 cut(s)	1036
SaqAI	TTAA	9 cut(s)	216, 269, 351, 840, 885, 1238, 1329, 1529, 1991
SatI	GCNGC	9 cut(s)	145, 582, 750, 932, 1089, 1149, 1152, 1400, 1840
Sau3AI	GATC	9 cut(s)	316, 520, 556, 715, 1057, 1432, 1891, 2062, 2299
Sau96I	GGNCC	5 cut(s)	440, 726, 1595, 1622, 2434
SchI	GAGTC	8 cut(s)	22, 233, 302, 518, 1481, 1792, 1912, 2405
ScrFI	CCNGG	7 cut(s)	483, 1248, 1284, 1362, 1404, 1599, 2459
SduI	GDGCHC	5 cut(s)	184, 203, 1036, 1654, 1770
SfaNI	GCATC	6 cut(s)	86, 835, 1517, 1662, 2265, 2332
SfcI	CTRYAG	3 cut(s)	636, 1933, 2105
SinI	GGWCC	3 cut(s)	440, 1622, 2434
SmiMI	CAYNNNNRTG	1 cut(s)	2328
SmlI	CTYRAG	3 cut(s)	658, 1026, 1814
SmoI	CTYRAG	3 cut(s)	658, 1026, 1814
SpeI	ACTAGT	2 cut(s)	272, 1553
SphI	GCATGC	1 cut(s)	2423
SsiI	CCGC	3 cut(s)	932, 1091, 1840
SspMI	CTAG	5 cut(s)	264, 273, 723, 1512, 1554
SstI	GAGCTC	1 cut(s)	1036
StyD4I	CCNGG	7 cut(s)	481, 1246, 1282, 1360, 1402, 1597, 2457
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	6 cut(s)	341, 455, 760, 927, 1315, 1934
TaiI	ACGT	2 cut(s)	403, 748
TaqI	TCGA	5 cut(s)	169, 397, 893, 1336, 1906
TatI	WGTACW	4 cut(s)	830, 922, 2176, 2366
TauI	GCSGC	2 cut(s)	934, 1842
TfiI	GAWTC	6 cut(s)	358, 394, 614, 866, 916, 2020
Tru1I	TTAA	9 cut(s)	216, 269, 351, 840, 885, 1238, 1329, 1529, 1991
Tru9I	TTAA	9 cut(s)	216, 269, 351, 840, 885, 1238, 1329, 1529, 1991
TscAI	CASTG	4 cut(s)	460, 765, 932, 1043
TseFI	GTSAC	1 cut(s)	2213
TseI	GCWGC	7 cut(s)	144, 581, 749, 1088, 1148, 1151, 1399
Tsp45I	GTSAC	1 cut(s)	2213
TspDTI	ATGAA	8 cut(s)	128, 456, 624, 753, 792, 890, 1778, 2415
TspGWI	ACGGA	1 cut(s)	1164
TspRI	CASTG	4 cut(s)	460, 765, 932, 1043
Van91I	CCANNNNNTGG	2 cut(s)	1265, 1661
VneI	GTGCAC	2 cut(s)	180, 1650
VpaK11BI	GGWCC	3 cut(s)	440, 1622, 2434
VspI	ATTAAT	2 cut(s)	216, 1991
XapI	RAATTY	7 cut(s)	1082, 1186, 1603, 1800, 1880, 2088, 2403
XbaI	TCTAGA	1 cut(s)	1511
XceI	RCATGY	3 cut(s)	901, 1982, 2423
XcmI	CCANNNNNNNNNTGG	2 cut(s)	239, 2465
XmaJI	CCTAGG	1 cut(s)	722
XmiI	GTMKAC	1 cut(s)	626
XmnI	GAANNNNTTC	2 cut(s)	950, 1354
XspI	CTAG	5 cut(s)	264, 273, 723, 1512, 1554
ZraI	GACGTC	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	2325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.