FvH4_4g07670

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014711
Physical Location & Seq
Reverse (-)
7091347 .. 7093135
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07670.t1

Sequence Viewer

Length: 1122 bp
ATGGCCGTCATCCTTCGTAAAGTAGCTACAAAGACATTGTGGGTTTACTTTTATGTTTTGTTGTTTTCGGTGTCATCGAATATGCATTACTTAGTTGATGGGGCACCACAAGCTCCTTGTTACTTCATATTTGGAGACTCACTATCTGATAGTGGAAATAACAATCGGCTTTTGACACTGGCCAAAGTCAATTATCATCCATATGGCATTGATTTTTCACTAGGTCCAACTGGAAGATTTTGCAACGGACGTAATTTAGTCGATATTATCGCTAAACTATTAGGTTTTGATGATTACATTTCTCCTTTCGCAACTGCAACAAAAGATGATATAACAAAAGGTGTAAATTATGCATCTGGTGCAGCAGGTATTCGTGATGAATCTGGACGTAATCAGGGAATGAGAATATCCTTGAATAAGCAATTAATAAATCACCAAATCATAGTCAAAAGGCTTGTTGCCCTAAGGGGAAATAACGGTTCACTCGTTGCTGATTATCTAAGCAAGTGCATATATTCAGTTGGGATGGGTAGCAATGATTACATTAATAACTATTTCATGCCAAAGCTTTACCAAACTAGCCGATTATATACTCCAGAGCAATATGCAGATGTTCTTGTTCAAGAGTACTCACAACAATTAAGGACTCTGTACAATTCTGGGGCAAGGAAGATCGTCATTTTTGGAGTAGGTATGATAGGCTCAACACCATTCGAAGTAGCAATGTGTGGCTCAAACGGCACTCTGTGTGTTGATAACATCAACAATGCTGTCCAACTTTTCAATGCAAGGCTTAAATCGCTTGTTACTGATCTTAACACAAATCTAACAAATGCTAAGTTTATTTACATAGATTATTATGGAATTGGCCTATCCGGTGCTCTTTCATCTCCTCCCGGTTCTATAAACTACACTGCGCCATGCTGTGAAGTTGAAAGGAATAGCACGACAGGGCTATGTACCGCGTTCAAGACCCCCTGTCAGAACAGAACTCAATATGCATTTTGGGATGCTATCCATCCTACTGAGATTTCAAATGTGTTTATAGGAGCAAGAGCATATAATTCTACATTACCTACTGATGTTTTTCCTTGTGACATTAGCCACTTAGCTCAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

374

Amino Acids

41.15

Weight (kDa)

8.42

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 41 - 346 1.4e-33 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07670
malus_domestica MD12G1049900.v1.1
prunus_persica Prupe.1G081300_v2.0.a1 Prupe.1G081300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0400521 RchiOBHm_Chr4g0400721
rosa_laevigata RLG00000009183
rosa_multiflora Rmu_sc0002636.1_g000017
rosa_roxburghii Rroxscaffold_5G00345560
rosa_rugosa Rorug04G0025400
rosa_samantha Rh4AG101800 Rh4AG103200 Rh4BG098100 Rh4CG109800 Rh4CG111500 Rh4DG095100
rosa_wichuraiana Rw4G008350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 965
AciI CCGC 1 cut(s) 963
AcoI YGGCCR 2 cut(s) 3, 180
AdeI CACNNNGTG 1 cut(s) 747
AfaI GTAC 3 cut(s) 629, 653, 961
AgsI TTSAA 6 cut(s) 415, 623, 784, 935, 970, 1035
AhdI GACNNNNNGTC 1 cut(s) 978
AluBI AGCT 4 cut(s) 26, 113, 568, 1112
AluI AGCT 4 cut(s) 26, 113, 568, 1112
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 1 cut(s) 129
AoxI GGCC 3 cut(s) 3, 180, 868
ApeKI GCWGC 1 cut(s) 362
AseI ATTAAT 2 cut(s) 425, 546
AspLEI GCGC 1 cut(s) 919
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 897
AsuHPI GGTGA 1 cut(s) 425
AsuII TTCGAA 1 cut(s) 714
AvaII GGWCC 1 cut(s) 224
AxyI CCTNAGG 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 883
BbvI GCAGC 1 cut(s) 374
BccI CCATC 3 cut(s) 92, 520, 1026
BceAI ACGGC 1 cut(s) 754
BcnI CCSGG 1 cut(s) 897
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 2 cut(s) 221, 579
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmcAI AGTACT 1 cut(s) 629
Bme1390I CCNGG 1 cut(s) 897
Bme18I GGWCC 1 cut(s) 224
BmeRI GACNNNNNGTC 1 cut(s) 978
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 897
BmsI GCATC 2 cut(s) 362, 1000
BpmI CTGGAG 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 714
BpuMI CCSGG 1 cut(s) 897
BsaWI WCCGGW 1 cut(s) 875
Bse1I ACTGG 2 cut(s) 183, 235
Bse21I CCTNAGG 1 cut(s) 464
Bse3DI GCAATG 2 cut(s) 541, 729
BseGI GGATG 5 cut(s) 9, 196, 531, 1015, 1018
BseMI GCAATG 2 cut(s) 541, 729
BseMII CTCAG 1 cut(s) 1017
BseNI ACTGG 2 cut(s) 183, 235
BseRI GAGGAG 1 cut(s) 882
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 965
BshFI GGCC 3 cut(s) 5, 182, 870
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 883
BsiSI CCGG 2 cut(s) 876, 897
BsmAI GTCTC 1 cut(s) 129
BsnI GGCC 3 cut(s) 5, 182, 870
Bsp119I TTCGAA 1 cut(s) 714
Bsp1286I GDGCHC 2 cut(s) 106, 883
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 2 cut(s) 672, 811
BspACI CCGC 1 cut(s) 963
BspANI GGCC 3 cut(s) 5, 182, 870
BspCNI CTCAG 1 cut(s) 1018
BspFNI CGCG 1 cut(s) 965
BspLI GGNNCC 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 356
BspT104I TTCGAA 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 103
BsrDI GCAATG 2 cut(s) 541, 729
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 2 cut(s) 183, 235
BssMI GATC 2 cut(s) 672, 811
Bst4CI ACNGT 1 cut(s) 479
BstAPI GCANNNNNTGC 1 cut(s) 359
BstAUI TGTACA 1 cut(s) 651
BstBI TTCGAA 1 cut(s) 714
BstDEI CTNAG 6 cut(s) 91, 464, 500, 837, 1026, 1108
BstF5I GGATG 5 cut(s) 9, 196, 531, 1015, 1018
BstFNI CGCG 1 cut(s) 965
BstHHI GCGC 1 cut(s) 919
BstKTI GATC 2 cut(s) 675, 814
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 672, 811
BstMWI GCNNNNNNNGC 4 cut(s) 110, 359, 738, 799
BstSCI CCNGG 1 cut(s) 895
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 965
BstV1I GCAGC 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 464
BsuRI GGCC 3 cut(s) 5, 182, 870
BtsCI GGATG 5 cut(s) 9, 196, 531, 1015, 1018
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 2 cut(s) 176, 912
BveI ACCTGC 1 cut(s) 356
CfoI GCGC 1 cut(s) 919
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 3 cut(s) 628, 652, 960
CviAII CATG 2 cut(s) 559, 921
CviQI GTAC 3 cut(s) 628, 652, 960
DdeI CTNAG 6 cut(s) 91, 464, 500, 837, 1026, 1108
DpnI GATC 2 cut(s) 674, 813
DpnII GATC 2 cut(s) 672, 811
DraIII CACNNNGTG 1 cut(s) 747
DriI GACNNNNNGTC 1 cut(s) 978
EaeI YGGCCR 2 cut(s) 3, 180
Eam1105I GACNNNNNGTC 1 cut(s) 978
Eco47I GGWCC 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 464
EcoT22I ATGCAT 3 cut(s) 87, 355, 1003
FaeI CATG 2 cut(s) 562, 924
FatI CATG 2 cut(s) 558, 920
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 4 cut(s) 183, 538, 1005, 1022
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 221, 579
GlaI GCGC 1 cut(s) 918
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 3 cut(s) 5, 182, 870
HapII CCGG 2 cut(s) 876, 897
HhaI GCGC 1 cut(s) 919
Hin1II CATG 2 cut(s) 562, 924
Hin6I GCGC 1 cut(s) 917
HinP1I GCGC 1 cut(s) 917
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 3 cut(s) 137, 380, 646
HpaII CCGG 2 cut(s) 876, 897
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 2 cut(s) 46, 482
Hpy188I TCNGA 2 cut(s) 148, 984
Hpy188III TCNNGA 5 cut(s) 374, 384, 596, 623, 970
Hpy8I GTNNAC 2 cut(s) 46, 482
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 2 cut(s) 250, 388
HpyCH4V TGCA 9 cut(s) 85, 243, 317, 353, 362, 510, 608, 788, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 359, 738, 799
HpyF3I CTNAG 6 cut(s) 91, 464, 500, 837, 1026, 1108
HpySE526I ACGT 2 cut(s) 250, 388
Hsp92II CATG 2 cut(s) 562, 924
HspAI GCGC 1 cut(s) 917
Kzo9I GATC 2 cut(s) 672, 811
LmnI GCTCC 2 cut(s) 118, 1049
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 2 cut(s) 362, 1000
MaeI CTAG 2 cut(s) 221, 579
MaeII ACGT 2 cut(s) 250, 388
MaeIII GTNAC 3 cut(s) 119, 805, 1094
MalI GATC 2 cut(s) 674, 813
MboI GATC 2 cut(s) 672, 811
MboII GAAGA 2 cut(s) 246, 682
MhlI GDGCHC 2 cut(s) 106, 883
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 8 cut(s) 190, 253, 346, 422, 638, 655, 864, 1063
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 2 cut(s) 131, 640
MmeI TCCRAC 2 cut(s) 251, 799
MnlI CCTC 1 cut(s) 903
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 3 cut(s) 87, 355, 1003
MscI TGGCCA 1 cut(s) 182
MseI TTAA 5 cut(s) 425, 546, 641, 795, 816
MslI CAYNNNNRTG 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 2 cut(s) 876, 897
MspR9I CCNGG 1 cut(s) 897
MvnI CGCG 1 cut(s) 965
MwoI GCNNNNNNNGC 4 cut(s) 110, 359, 738, 799
NciI CCSGG 1 cut(s) 897
NdeI CATATG 1 cut(s) 202
NdeII GATC 2 cut(s) 672, 811
NlaIII CATG 2 cut(s) 562, 924
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 1094
NsiI ATGCAT 3 cut(s) 87, 355, 1003
NspV TTCGAA 1 cut(s) 714
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 483
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 2 cut(s) 131, 640
PpsI GAGTC 2 cut(s) 131, 640
PshBI ATTAAT 2 cut(s) 425, 546
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 224
RsaI GTAC 3 cut(s) 629, 653, 961
RsaNI GTAC 3 cut(s) 628, 652, 960
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 5 cut(s) 425, 546, 641, 795, 816
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 2 cut(s) 672, 811
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 629
SchI GAGTC 2 cut(s) 131, 640
ScrFI CCNGG 1 cut(s) 897
SduI GDGCHC 2 cut(s) 106, 883
SfaNI GCATC 2 cut(s) 362, 1000
SfuI TTCGAA 1 cut(s) 714
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 8 cut(s) 190, 253, 346, 422, 638, 655, 864, 1063
SsiI CCGC 1 cut(s) 963
SspMI CTAG 2 cut(s) 221, 579
StyD4I CCNGG 1 cut(s) 895
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 2 cut(s) 253, 391
TaqI TCGA 3 cut(s) 77, 261, 714
TasI AATT 8 cut(s) 190, 253, 346, 422, 638, 655, 864, 1063
TatI WGTACW 2 cut(s) 627, 651
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 5 cut(s) 425, 546, 641, 795, 816
Tru9I TTAA 5 cut(s) 425, 546, 641, 795, 816
TscAI CASTG 2 cut(s) 183, 919
TseFI GTSAC 1 cut(s) 1094
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 1094
TspDTI ATGAA 4 cut(s) 115, 393, 547, 876
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 2 cut(s) 183, 919
VpaK11BI GGWCC 1 cut(s) 224
VspI ATTAAT 2 cut(s) 425, 546
XspI CTAG 2 cut(s) 221, 579
ZrmI AGTACT 1 cut(s) 629
Zsp2I ATGCAT 3 cut(s) 87, 355, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.