Rh4DG095100

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014711
Physical Location & Seq
Reverse (-)
14354242 .. 14355039
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG095100.1

Sequence Viewer

Length: 483 bp
ATGGGGCATCACAAGTTCCTTGTTACTTCATATTTGGAGACTCGATCGTTATCCGATAGTGGAAATAACAATGGGCTTTTGACACTGGCCAAAGTCAATTATCGTCCCTATGGCATTGACTTTCCACAAGGTCCAACTGGAAGGTTCTCCAACGGACGTAACTTGGTCGATATTATTGCTGAACTACTAGGTTTTGATGATTATATTCCCACTTTCGCGGCTGCAATAGGAGGAGAAATAACAAAAGGTGTAAATTATGCATCTGGTGCAGCTGGTATCCGTGACGAATCTGGACGTAACCAGGGAATGAGAATAACCTTGCATAAGCAATTGATAAATCACCAAATCATAGTCAATAAGCTTGTTGCCAATGGTTCACTCACTGCAGATTATCTAAGCAAGTGCATATATTCGATTGGGATAGGCACTAACGATTACATTAACAACTACTTTATGCCAAAACTCTACCCAACTAGCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

8.99

Isoelectric Point (pI)

20.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 16 - 151 7.6e-11 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07670
malus_domestica MD12G1049900.v1.1
prunus_persica Prupe.1G081300_v2.0.a1 Prupe.1G081300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0400521 RchiOBHm_Chr4g0400721
rosa_laevigata RLG00000009183
rosa_multiflora Rmu_sc0002636.1_g000017
rosa_roxburghii Rroxscaffold_5G00345560
rosa_rugosa Rorug04G0025400
rosa_samantha Rh4AG101800 Rh4AG103200 Rh4BG098100 Rh4CG109800 Rh4CG111500 Rh4DG095100
rosa_wichuraiana Rw4G008350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 218
AciI CCGC 2 cut(s) 218, 478
AcoI YGGCCR 1 cut(s) 87
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 2 cut(s) 272, 361
AluI AGCT 2 cut(s) 272, 361
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 221, 269
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 89
BbvI GCAGC 2 cut(s) 208, 281
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 188, 474
BfmI CTRYAG 1 cut(s) 384
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 4 cut(s) 219, 222, 270, 478
BlsI GCNGC 4 cut(s) 220, 223, 271, 479
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 2 cut(s) 16, 269
BsaBI GATNNNNATC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 301
Bse1I ACTGG 2 cut(s) 90, 142
Bse8I GATNNNNATC 1 cut(s) 49
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 49
BseNI ACTGG 2 cut(s) 90, 142
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 208, 281
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 2 cut(s) 218, 478
BspANI GGCC 1 cut(s) 89
BspFNI CGCG 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 388
BsrI ACTGG 2 cut(s) 90, 142
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 218
BstKTI GATC 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 44
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 208, 281
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 83, 381
Cfr13I GGNCC 1 cut(s) 131
CviJI RGCY 6 cut(s) 76, 89, 221, 272, 361, 477
CviKI_1 RGCY 6 cut(s) 76, 89, 221, 272, 361, 477
DdeI CTNAG 1 cut(s) 395
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 262
FaiI YATR 9 cut(s) 31, 111, 204, 258, 324, 350, 407, 409, 455
FaqI GGGAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 219, 222, 270, 478
Fsp4HI GCNGC 4 cut(s) 219, 222, 270, 478
FspBI CTAG 2 cut(s) 188, 474
GluI GCNGC 4 cut(s) 219, 222, 270, 478
HaeIII GGCC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 2 cut(s) 40, 287
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 135
HpyCH4IV ACGT 2 cut(s) 157, 295
HpyCH4V TGCA 6 cut(s) 224, 260, 269, 322, 386, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 2 cut(s) 157, 295
Kzo9I GATC 1 cut(s) 44
LpnPI CCDG 7 cut(s) 71, 123, 249, 258, 276, 287, 314
Lsp1109I GCAGC 2 cut(s) 208, 281
LweI GCATC 2 cut(s) 16, 269
MaeI CTAG 2 cut(s) 188, 474
MaeII ACGT 2 cut(s) 157, 295
MaeIII GTNAC 4 cut(s) 22, 158, 281, 296
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MfeI CAATTG 1 cut(s) 329
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 97, 253, 329
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 158, 174
MnlI CCTC 1 cut(s) 224
Mox20I TGGCCA 1 cut(s) 89
Mph1103I ATGCAT 1 cut(s) 262
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 441
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 262
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 4 cut(s) 220, 223, 271, 479
Ple19I CGATCG 1 cut(s) 47
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 388
PvuI CGATCG 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 4 cut(s) 219, 222, 270, 478
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 302
SetI ASST 9 cut(s) 133, 146, 160, 193, 250, 274, 298, 320, 363
SfaNI GCATC 2 cut(s) 16, 269
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 131
Sse9I AATT 3 cut(s) 97, 253, 329
SsiI CCGC 2 cut(s) 218, 478
SspMI CTAG 2 cut(s) 188, 474
StyD4I CCNGG 1 cut(s) 300
TaiI ACGT 2 cut(s) 160, 298
TaqI TCGA 3 cut(s) 43, 168, 413
TasI AATT 3 cut(s) 97, 253, 329
TauI GCSGC 2 cut(s) 221, 480
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 90, 388
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 2 cut(s) 221, 269
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 18
TspGWI ACGGA 2 cut(s) 168, 269
TspRI CASTG 2 cut(s) 90, 388
VpaK11BI GGWCC 1 cut(s) 131
XspI CTAG 2 cut(s) 188, 474
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.