Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0018354

Physical Location & Seq

Genomic Coordinates Forward (+)

10495847 .. 10498103

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09141.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCACACTCGAAGGACTGTGCAACGCGAACTTACCCCTTTGGATTTGGAGATTGAATGCTCTTGTAAGTTGAATAAGAAGCAATCGAAAGACTCTCGGTTGCCAATTGAAGACATAAGGGCAGGTTCTACTTCTTCACAAGAGGAGGAACACGAGCAAATACCATCATCACCTACACATTCAATTTACGAGGACGAGGACGAGGAAGAGCAAGTAGAGGAACCGTTAAAAGCTAAGATGGCATTGAAGGATTCCTTTGTGCATACAATGGACCACCTGGATTTCAACAAGGATCAAGGCAGCAACTATACCAACAAGCTTCACCTCAACAAGCTTCAAGGGCAGTCTATCAAGAACTTGGAGAGACAAGTTGGGCAACTTGCAACGGCGTTGCAAACAAGACCTCAAGGTGTTCTTCCTAGCACAACAGTTCAAAATCCTAAGGATGGGAGCATGGCTGAGCTTAATGCAGTCACTTTGAGAAGTGGAAAACAATTAGAGGAGCCTACTAAGCCTCACAAGATGTCCAAGACTGGTCAAGCTGAGAAGTATGAGCTGGAAATAAAGGAAGGAGAAAAGAGCAAAACTAGGCAGAAAGAGATCGATCCTTCAGACCCAAAACAAAATCTTCAAGTTTCTTCTCCTTCCAAGGTCGTCCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 Retrotrans_gag

Protein Analysis

222

Amino Acids

24.99

Weight (kDa)

5.95

Isoelectric Point (pI)

76.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018354)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19424 FvH4_3g44963 FvH4_4g09141 FvH4_5g31681 FvH4_5g37422
rosa_chinensis	RchiOBHm_Chr3g0494871
rosa_multiflora	Rmu_sc0003737.1_g000016 Rmu_sc0003798.1_g000004 Rmu_sc0013383.1_g000001 Rmu_sc0019276.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccII	CGCG	1 cut(s)	27
AclWI	GGATC	2 cut(s)	300, 599
AcuI	CTGAAG	1 cut(s)	594
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	9 cut(s)	56, 73, 110, 183, 247, 286, 338, 434, 632
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	6 cut(s)	233, 319, 334, 463, 542, 556
AluI	AGCT	6 cut(s)	233, 319, 334, 463, 542, 556
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	300, 599
ApeKI	GCWGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	162, 314
AvaII	GGWCC	1 cut(s)	271
AxyI	CCTNAGG	1 cut(s)	441
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	3 cut(s)	172, 232, 440
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	2 cut(s)	420, 588
BfuAI	ACCTGC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	301
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	222, 504
BmrFI	CCNGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	390
Bsa29I	ATCGAT	1 cut(s)	603
BsaJI	CCNNGG	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	538
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	450, 534
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	158, 515
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	292, 600, 604
Bsp1720I	GCTNAGC	1 cut(s)	459
BspCNI	CTCAG	2 cut(s)	451, 535
BspDI	ATCGAT	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	222, 504
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	300, 599
BspQI	GCTCTTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	3 cut(s)	292, 600, 604
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	19, 225, 430
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	5 cut(s)	234, 441, 459, 510, 543
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	3 cut(s)	295, 603, 607
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	292, 600, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 340, 511
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	603
Bsu36I	CCTNAGG	1 cut(s)	441
BsuTUI	ATCGAT	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	603
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	9 cut(s)	233, 319, 334, 458, 463, 505, 514, 542, 556
CviKI_1	RGCY	9 cut(s)	233, 319, 334, 458, 463, 505, 514, 542, 556
DdeI	CTNAG	5 cut(s)	234, 441, 459, 510, 543
DpnI	GATC	3 cut(s)	294, 602, 606
DpnII	GATC	3 cut(s)	292, 600, 604
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	594
Eco81I	CCTNAGG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	1 cut(s)	457
FaiI	YATR	5 cut(s)	116, 264, 309, 455, 552
FalI	AAGNNNNNCTT	4 cut(s)	239, 271, 399, 431
FatI	CATG	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	420, 588
GluI	GCNGC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	457
HindIII	AAGCTT	2 cut(s)	317, 332
HinfI	GANTC	2 cut(s)	92, 251
HphI	GGTGA	2 cut(s)	162, 314
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	2 cut(s)	352, 663
HpyAV	CCTTC	5 cut(s)	6, 241, 563, 618, 654
HpyCH4III	ACNGT	3 cut(s)	19, 225, 430
HpyCH4V	TGCA	6 cut(s)	4, 22, 262, 383, 394, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 340, 511
HpyF3I	CTNAG	5 cut(s)	234, 441, 459, 510, 543
Hsp92II	CATG	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	292, 600, 604
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	2 cut(s)	450, 502
LpnPI	CCDG	5 cut(s)	108, 263, 290, 519, 542
Lsp1109I	GCAGC	1 cut(s)	312
MaeI	CTAG	2 cut(s)	420, 588
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	3 cut(s)	294, 602, 606
MboI	GATC	3 cut(s)	292, 600, 604
MboII	GAAGA	6 cut(s)	122, 126, 218, 407, 620, 630
MfeI	CAATTG	1 cut(s)	105
MluCI	AATT	3 cut(s)	105, 183, 494
MlyI	GAGTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	227, 465
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	239, 340, 511
NdeII	GATC	3 cut(s)	292, 600, 604
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	2 cut(s)	222, 504
NmuCI	GTSAC	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	222, 504
PspPI	GGNCC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	227, 465
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	3 cut(s)	292, 600, 604
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	3 cut(s)	105, 183, 494
SspMI	CTAG	2 cut(s)	420, 588
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	3 cut(s)	19, 225, 430
TaqI	TCGA	3 cut(s)	10, 86, 603
TasI	AATT	3 cut(s)	105, 183, 494
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	227, 465
Tru9I	TTAA	2 cut(s)	227, 465
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	271
XspI	CTAG	2 cut(s)	420, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.