Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013383.1

Orthogroup ID

OG0018354

Physical Location & Seq

Genomic Coordinates Forward (+)

277 .. 812

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013383.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 536 bp

atgcttaaggacatggcacttcatacatctacattcatgcaagagaccaaggcacaatttaaggagcaagggcaatcaatcaagaacttagagagacaagttgggcaacttgcaagtaatatgcaaaataggcctcccggcactcttccaagcacaactgtgcctaatcctaagggtgagagtgttgcggagctccatgccatgactttgagaagtagaaagcaattagaggaaccaataagagccatagagaagtctcaagaagctttggaggaagaaaaagaatccaaaaacgaagctgaaaatatcaaaaatcaaaatttggcaatccaccgaccagtcggcgaaactagccgaccggtcgacaggttatgtgttccagggtcagaagcccaccgaccagtgggcaaaacccgccgaccagtcgtcacagaaaattcagattttgaccatttgaaggaaattagtcagcaagtcgaaaatcggggcactcctaacccttctttgaattcttttaaggctaacaatgatgcttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 Retrotrans_gag

Protein Analysis

179

Amino Acids

20.02

Weight (kDa)

6.99

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018354)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19424 FvH4_3g44963 FvH4_4g09141 FvH4_5g31681 FvH4_5g37422
rosa_chinensis	RchiOBHm_Chr3g0494871
rosa_multiflora	Rmu_sc0003737.1_g000016 Rmu_sc0003798.1_g000004 Rmu_sc0013383.1_g000001 Rmu_sc0019276.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	2 cut(s)	188, 415
AcsI	RAATTY	3 cut(s)	319, 436, 508
AfiI	CCNNNNNNNGG	2 cut(s)	403, 457
AflII	CTTAAG	1 cut(s)	5
AgeI	ACCGGT	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	457, 508
AhdI	GACNNNNNGTC	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	379
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	193, 266, 299
AluI	AGCT	3 cut(s)	193, 266, 299
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	3 cut(s)	38, 88, 261
AoxI	GGCC	1 cut(s)	131
ApoI	RAATTY	3 cut(s)	319, 436, 508
AsiGI	ACCGGT	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	3 cut(s)	38, 88, 261
BfaI	CTAG	1 cut(s)	351
BfrI	CTTAAG	1 cut(s)	5
Bme1390I	CCNGG	2 cut(s)	138, 381
BmeRI	GACNNNNNGTC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	138, 381
BmsI	GCATC	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	48, 380
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 457
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	3 cut(s)	338, 401, 422
Bse21I	CCTNAGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	48, 380
BseLI	CCNNNNNNNGG	2 cut(s)	403, 457
BseNI	ACTGG	3 cut(s)	338, 401, 422
BseSI	GKGCMC	1 cut(s)	491
Bsh1285I	CGRYCG	2 cut(s)	359, 363
BshFI	GGCC	1 cut(s)	133
BshTI	ACCGGT	1 cut(s)	358
BsiEI	CGRYCG	2 cut(s)	359, 363
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	138, 359
BslI	CCNNNNNNNGG	2 cut(s)	403, 457
BsmAI	GTCTC	3 cut(s)	38, 88, 261
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	195, 491
BspACI	CCGC	2 cut(s)	188, 415
BspANI	GGCC	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	234
BspTI	CTTAAG	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	358
BsrI	ACTGG	3 cut(s)	338, 401, 422
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	48, 380
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	88, 171
BstMAI	GTCTC	3 cut(s)	38, 88, 261
BstMCI	CGRYCG	2 cut(s)	359, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 351, 414
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	2 cut(s)	136, 379
BstSLI	GKGCMC	1 cut(s)	491
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	408
Cfr10I	RCCGGY	1 cut(s)	358
CspAI	ACCGGT	1 cut(s)	358
CviAII	CATG	4 cut(s)	13, 37, 197, 202
CviJI	RGCY	8 cut(s)	133, 193, 245, 266, 299, 354, 392, 521
CviKI_1	RGCY	8 cut(s)	133, 193, 245, 266, 299, 354, 392, 521
DdeI	CTNAG	2 cut(s)	88, 171
DriI	GACNNNNNGTC	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	16, 40, 200, 205
FaiI	YATR	8 cut(s)	14, 24, 38, 122, 198, 203, 248, 373
FatI	CATG	4 cut(s)	12, 36, 196, 201
FauI	CCCGC	1 cut(s)	422
FblI	GTMKAC	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	2 cut(s)	138, 359
Hin1II	CATG	4 cut(s)	16, 40, 200, 205
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	2 cut(s)	138, 359
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	388, 442
Hpy188III	TCNNGA	2 cut(s)	82, 260
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	451, 510
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	40, 113, 124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 351, 414
HpyF3I	CTNAG	2 cut(s)	88, 171
Hsp92II	CATG	4 cut(s)	16, 40, 200, 205
LmnI	GCTCC	3 cut(s)	64, 190, 198
LpnPI	CCDG	8 cut(s)	151, 351, 352, 366, 372, 393, 414, 435
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	427
MboII	GAAGA	2 cut(s)	137, 287
MhlI	GDGCHC	2 cut(s)	195, 491
MluCI	AATT	6 cut(s)	56, 224, 319, 436, 462, 508
MnlI	CCTC	3 cut(s)	144, 223, 265
MseI	TTAA	3 cut(s)	6, 60, 516
MslI	CAYNNNNRTG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	5
MspI	CCGG	2 cut(s)	138, 359
MspR9I	CCNGG	2 cut(s)	138, 381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	130, 351, 414
NciI	CCSGG	1 cut(s)	138
NlaIII	CATG	4 cut(s)	16, 40, 200, 205
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	158
PceI	AGGCCT	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	284
PinAI	ACCGGT	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	362
SaqAI	TTAA	3 cut(s)	6, 60, 516
ScrFI	CCNGG	2 cut(s)	138, 381
SduI	GDGCHC	2 cut(s)	195, 491
SetI	ASST	4 cut(s)	195, 268, 301, 371
SfaNI	GCATC	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	2 cut(s)	5, 258
SmoI	CTYRAG	2 cut(s)	5, 258
Sse9I	AATT	6 cut(s)	56, 224, 319, 436, 462, 508
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	2 cut(s)	188, 415
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	136, 379
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	363, 477
TasI	AATT	6 cut(s)	56, 224, 319, 436, 462, 508
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	6, 60, 516
Tru9I	TTAA	3 cut(s)	6, 60, 516
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	11, 25
TspRI	CASTG	1 cut(s)	408
Vha464I	CTTAAG	1 cut(s)	5
XapI	RAATTY	3 cut(s)	319, 436, 508
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.