RchiOBHm_Chr3g0494871

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
43985485 .. 43989407
3923 bp
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UTR
Exon/CDS
Intron
PRQ45737

Sequence Viewer

Length: 225 bp
ATGCTTACTCGTAAAACTGCTCAAGGCAATCTTACCCCCTTGGATTCAGAGATAGAACGCACTTGCAAGTCAAATAGGAATCAAACGAAGGGAACTAGTTTGCCAATTGACGACACAACGGCGGTTCTACTTCCTCACAAGGGGAGGAGGAAACACCACCAAACTCACCTGCACATTCAATTCACGAGGACGAAGAGGAACCCCCAAGACTCGACATGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.58

Weight (kDa)

10.59

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 177
AciI CCGC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 179
AhlI ACTAGT 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 158
BauI CACGAG 1 cut(s) 184
BceAI ACGGC 1 cut(s) 135
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 140
BspACI CCGC 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 39
BssSI CACGAG 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 188
BveI ACCTGC 1 cut(s) 177
CviAII CATG 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 219
FaiI YATR 1 cut(s) 217
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 1 cut(s) 215
FspBI CTAG 1 cut(s) 96
Hin1II CATG 1 cut(s) 219
HinfI GANTC 3 cut(s) 44, 79, 209
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 66, 172
Hsp92II CATG 1 cut(s) 219
LpnPI CCDG 1 cut(s) 182
MaeI CTAG 1 cut(s) 96
MboII GAAGA 1 cut(s) 205
MfeI CAATTG 1 cut(s) 105
MluCI AATT 2 cut(s) 105, 179
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 5 cut(s) 138, 141, 144, 180, 189
MunI CAATTG 1 cut(s) 105
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 44, 79
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 203
SetI ASST 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
SpeI ACTAGT 1 cut(s) 95
Sse9I AATT 2 cut(s) 105, 179
SsiI CCGC 1 cut(s) 122
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 1 cut(s) 212
TasI AATT 2 cut(s) 105, 179
TfiI GAWTC 2 cut(s) 44, 79
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.