Rmu_sc0003737.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003737.1
OG0018354
Physical Location & Seq
Reverse (-)
73032 .. 73463
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003737.1_g000016.1.cds

Sequence Viewer

Length: 432 bp
atgcttactcgtagcactgcacaaggcaatcttacacccttggattctgaaatagaacacactctcaagtcgaatagaaagcaaaggaaggaaaccagtttgccaattgacgacacaacggcgggttctacttcctcacaaggagaggagcacgggaaaactccaccaaactcacctgaacattcaattcacgaggacgaagaggaacccccaatcctcgccatggttgaaccaaagccattgaaggatgcttttgttcctacagcttcggaatccccctcatgcatagcttacacaccaccgggcaatcaggccttttccattcctgtgcagctccttaactcattgcctaagtactcgggtatgcctagacaagttttaacaaaaaaaatcatcaatgcttcgtggatccaggatctaagacttgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.68

Weight (kDa)

5.54

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AclWI GGATC 3 cut(s) 403, 416, 423
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 3 cut(s) 186, 230, 244
AjnI CCWGG 1 cut(s) 411
AloI GAACNNNNNNTCC 2 cut(s) 198, 230
AluBI AGCT 3 cut(s) 266, 290, 334
AluI AGCT 3 cut(s) 266, 290, 334
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 3 cut(s) 403, 416, 423
Ama87I CYCGRG 1 cut(s) 358
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 331
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 358
BamHI GGATCC 1 cut(s) 408
BauI CACGAG 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 413
BcnI CCSGG 1 cut(s) 303
BfaI CTAG 2 cut(s) 369, 430
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 2 cut(s) 303, 413
BmeT110I CYCGRG 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 207, 410
BmrFI CCNGG 2 cut(s) 303, 413
BmsI GCATC 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 39, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 39, 222
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 350
BshFI GGCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 223
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 408, 415
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 207, 410
BspPI GGATC 3 cut(s) 403, 416, 423
BsrDI GCAATG 1 cut(s) 344
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 39, 222
BssMI GATC 2 cut(s) 408, 415
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 2 cut(s) 39, 222
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 351, 419
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 411, 418
BstMBI GATC 2 cut(s) 408, 415
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 301, 411
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 343
BstX2I RGATCY 2 cut(s) 408, 415
BstYI RGATCY 2 cut(s) 408, 415
BsuRI GGCC 1 cut(s) 314
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Csp6I GTAC 1 cut(s) 355
CviAII CATG 2 cut(s) 223, 282
CviJI RGCY 5 cut(s) 238, 266, 290, 314, 334
CviKI_1 RGCY 5 cut(s) 238, 266, 290, 314, 334
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 2 cut(s) 351, 419
DpnI GATC 2 cut(s) 410, 417
DpnII GATC 2 cut(s) 408, 415
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 39, 222
Eco147I AGGCCT 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 2 cut(s) 39, 222
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 2 cut(s) 39, 222
FaeI CATG 2 cut(s) 226, 285
FaiI YATR 4 cut(s) 224, 283, 287, 365
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 2 cut(s) 222, 281
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 2 cut(s) 369, 430
GluI GCNGC 1 cut(s) 332
HaeIII GGCC 1 cut(s) 314
HapII CCGG 1 cut(s) 302
Hin1II CATG 2 cut(s) 226, 285
HinfI GANTC 2 cut(s) 44, 272
HpaII CCGG 1 cut(s) 302
HphI GGTGA 1 cut(s) 165
Hpy188I TCNGA 2 cut(s) 49, 271
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 82, 238
HpyCH4V TGCA 3 cut(s) 20, 285, 331
HpyF3I CTNAG 2 cut(s) 351, 419
Hsp92II CATG 2 cut(s) 226, 285
Kzo9I GATC 2 cut(s) 408, 415
LmnI GCTCC 2 cut(s) 148, 339
LpnPI CCDG 7 cut(s) 109, 189, 296, 315, 339, 398, 425
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 1 cut(s) 238
MaeI CTAG 2 cut(s) 369, 430
MalI GATC 2 cut(s) 410, 417
MboI GATC 2 cut(s) 408, 415
MboII GAAGA 1 cut(s) 212
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 2 cut(s) 408, 415
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 2 cut(s) 105, 186
MnlI CCTC 6 cut(s) 139, 145, 187, 196, 227, 289
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 2 cut(s) 339, 380
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 2 cut(s) 303, 413
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 413
NciI CCSGG 1 cut(s) 303
NcoI CCATGG 1 cut(s) 222
NdeII GATC 2 cut(s) 408, 415
NlaIII CATG 2 cut(s) 226, 285
NlaIV GGNNCC 2 cut(s) 207, 410
NsiI ATGCAT 1 cut(s) 287
PceI AGGCCT 1 cut(s) 314
PfeI GAWTC 2 cut(s) 44, 272
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 2 cut(s) 207, 410
PsuI RGATCY 2 cut(s) 408, 415
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 2 cut(s) 339, 380
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 2 cut(s) 408, 415
ScaI AGTACT 1 cut(s) 356
ScrFI CCNGG 2 cut(s) 303, 413
SduI GDGCHC 1 cut(s) 153
SetI ASST 4 cut(s) 178, 268, 292, 336
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 105, 186
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 1 cut(s) 122
SspMI CTAG 2 cut(s) 369, 430
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 301, 411
StyI CCWWGG 2 cut(s) 39, 222
TaqI TCGA 1 cut(s) 71
TasI AATT 2 cut(s) 105, 186
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 2 cut(s) 44, 272
Tru1I TTAA 2 cut(s) 339, 380
Tru9I TTAA 2 cut(s) 339, 380
TscAI CASTG 1 cut(s) 22
TseI GCWGC 1 cut(s) 331
TspRI CASTG 1 cut(s) 22
XspI CTAG 2 cut(s) 369, 430
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.