FvH4_5g37422

function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018354
Physical Location & Seq
Forward (+)
27542875 .. 27544410
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37422.t1

Sequence Viewer

Length: 756 bp
ATGCAAGATACCAAGGCTCAATTTAAGGAGCAGGGGCAGTCTATCAAGAACTTAGAGAGACAAGTTGGGCAACTTGCAACAGCGTTGCAAACGAGACCTCAAGGTGTTCTTCCTAGCACAACAGTTCAAAATCCTAAGGATGTGAGCATGGCTGAGCTTAATGCAGTCACTTTGAGAAGTGGAAAACAATTGGAGGAGCCTACTAAGCCTCACAAGATGTCCAAGAGTGGTCAACATGAGAAGGATGAGCTGGAAATAAAAGAAGGTGAAAAAAGCAAAACTAGAGAGAAAAAGATCGATCCTTCAGACCCAAAACGAAATCTTCAAGTTTCTTCTCCTTCCAAGGCAAGAGATCCCGGAGATTCAATATTGATTCCAATGACAAGCAATAACAGTTCTCCATCAATCAAAGAGAGAGGGGAGGTTAAATGCCTGAATCAAGACTTTAATGATACATTGATTGCTCAACGAGAATTGTCATGTCATGAAGGTAAGTCTAGTTGTTGTAATGTTCACATGCCTTTATCTGATTTAGCTCTTACTCATGACAGGTCACCCCAAGAGAATTCTAAGCCAAGCAAGGGATTTCTTCCAACCAAATCACCATCTCCATGTGGTTTCACCGAGTTTCCAATGAAAAGGACTTGTAGCGGTGATCCACCATACCCACCTGACCCAAAAAAGAAGTCCTTCATGAAGAAAACGACAAAATTCCTAGCAAAGTCTTCGAAAGGAGGCTTCTTCACCTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

252

Amino Acids

27.77

Weight (kDa)

9.35

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 651
AclWI GGATC 3 cut(s) 293, 347, 650
AcsI RAATTY 2 cut(s) 565, 710
AcuI CTGAAG 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 3 cut(s) 128, 326, 366
AluBI AGCT 3 cut(s) 157, 250, 536
AluI AGCT 3 cut(s) 157, 250, 536
Alw26I GTCTC 2 cut(s) 52, 88
AlwI GGATC 3 cut(s) 293, 347, 650
ApoI RAATTY 2 cut(s) 565, 710
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
Asp700I GAANNNNTTC 1 cut(s) 689
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 6 cut(s) 278, 546, 594, 613, 665, 736
AsuII TTCGAA 1 cut(s) 728
AxyI CCTNAGG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 717
BccI CCATC 2 cut(s) 409, 613
BcgI CGANNNNNNTGC 2 cut(s) 708, 742
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 52, 88
BfaI CTAG 4 cut(s) 114, 282, 498, 716
BlpI GCTNAGC 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 717
Bpu1102I GCTNAGC 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 728
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 357
Bsa29I ATCGAT 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 12, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse21I CCTNAGG 1 cut(s) 135
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 12, 342
BseGI GGATG 2 cut(s) 145, 250
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 209
BshVI ATCGAT 1 cut(s) 297
BsiSI CCGG 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 2 cut(s) 52, 88
Bso31I GGTCTC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 728
Bsp143I GATC 4 cut(s) 294, 298, 352, 655
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 1 cut(s) 651
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 297
BspHI TCATGA 3 cut(s) 484, 544, 693
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 3 cut(s) 293, 347, 650
BspT104I TTCGAA 1 cut(s) 728
BspTNI GGTCTC 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 12, 342
BssMI GATC 4 cut(s) 294, 298, 352, 655
BssT1I CCWWGG 2 cut(s) 12, 342
Bst4CI ACNGT 2 cut(s) 124, 395
BstBI TTCGAA 1 cut(s) 728
BstDEI CTNAG 6 cut(s) 52, 135, 153, 204, 570, 753
BstEII GGTNACC 1 cut(s) 552
BstF5I GGATG 2 cut(s) 145, 250
BstKTI GATC 4 cut(s) 297, 301, 355, 658
BstMAI GTCTC 2 cut(s) 52, 88
BstMBI GATC 4 cut(s) 294, 298, 352, 655
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 520
BstPI GGTNACC 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu15I ATCGAT 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 297
BtsCI GGATG 2 cut(s) 145, 250
CciI TCATGA 3 cut(s) 484, 544, 693
ClaI ATCGAT 1 cut(s) 297
CviAII CATG 8 cut(s) 148, 236, 480, 485, 517, 545, 612, 694
CviJI RGCY 9 cut(s) 17, 152, 157, 199, 208, 250, 536, 574, 738
CviKI_1 RGCY 9 cut(s) 17, 152, 157, 199, 208, 250, 536, 574, 738
DdeI CTNAG 6 cut(s) 52, 135, 153, 204, 570, 753
DpnI GATC 4 cut(s) 296, 300, 354, 657
DpnII GATC 4 cut(s) 294, 298, 352, 655
Eco130I CCWWGG 2 cut(s) 12, 342
Eco31I GGTCTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 135
Eco91I GGTNACC 1 cut(s) 552
EcoO65I GGTNACC 1 cut(s) 552
EcoRI GAATTC 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 12, 342
ErhI CCWWGG 2 cut(s) 12, 342
FaeI CATG 8 cut(s) 151, 239, 483, 488, 520, 548, 615, 697
FaiI YATR 9 cut(s) 149, 237, 481, 486, 518, 546, 613, 664, 695
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 674, 706
FatI CATG 8 cut(s) 147, 235, 479, 484, 516, 544, 611, 693
FokI GGATG 2 cut(s) 152, 257
FspBI CTAG 4 cut(s) 114, 282, 498, 716
HapII CCGG 1 cut(s) 357
Hin1II CATG 8 cut(s) 151, 239, 483, 488, 520, 548, 615, 697
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HinfI GANTC 3 cut(s) 362, 373, 436
HpaII CCGG 1 cut(s) 357
HphI GGTGA 6 cut(s) 278, 546, 594, 613, 665, 736
Hpy166II GTNNAC 2 cut(s) 233, 514
Hpy188I TCNGA 2 cut(s) 307, 529
Hpy188III TCNNGA 5 cut(s) 46, 440, 485, 545, 694
Hpy8I GTNNAC 2 cut(s) 233, 514
HpyAV CCTTC 6 cut(s) 235, 257, 312, 348, 482, 700
HpyCH4III ACNGT 2 cut(s) 124, 395
HpyCH4V TGCA 4 cut(s) 4, 77, 88, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 6 cut(s) 52, 135, 153, 204, 570, 753
Hsp92II CATG 8 cut(s) 151, 239, 483, 488, 520, 548, 615, 697
Kzo9I GATC 4 cut(s) 294, 298, 352, 655
LmnI GCTCC 2 cut(s) 28, 196
LpnPI CCDG 6 cut(s) 17, 236, 370, 446, 535, 684
MaeI CTAG 4 cut(s) 114, 282, 498, 716
MaeIII GTNAC 2 cut(s) 166, 552
MalI GATC 4 cut(s) 296, 300, 354, 657
MboI GATC 4 cut(s) 294, 298, 352, 655
MboII GAAGA 7 cut(s) 101, 314, 324, 581, 709, 717, 733
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 1 cut(s) 352
MluCI AATT 5 cut(s) 20, 188, 473, 565, 710
MmeI TCCRAC 1 cut(s) 617
MnlI CCTC 6 cut(s) 108, 187, 219, 410, 415, 728
MroXI GAANNNNTTC 1 cut(s) 689
MseI TTAA 4 cut(s) 24, 159, 426, 447
MslI CAYNNNNRTG 1 cut(s) 610
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 357
MunI CAATTG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 357
NdeII GATC 4 cut(s) 294, 298, 352, 655
NlaIII CATG 8 cut(s) 151, 239, 483, 488, 520, 548, 615, 697
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 2 cut(s) 166, 552
NspI RCATGY 1 cut(s) 520
NspV TTCGAA 1 cut(s) 728
PagI TCATGA 3 cut(s) 484, 544, 693
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 3 cut(s) 362, 373, 436
PfoI TCCNGGA 1 cut(s) 355
PspEI GGTNACC 1 cut(s) 552
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 610
SaqAI TTAA 4 cut(s) 24, 159, 426, 447
Sau3AI GATC 4 cut(s) 294, 298, 352, 655
ScrFI CCNGG 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 610
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 5 cut(s) 20, 188, 473, 565, 710
SsiI CCGC 1 cut(s) 651
SspI AATATT 1 cut(s) 369
SspMI CTAG 4 cut(s) 114, 282, 498, 716
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 2 cut(s) 12, 342
TaaI ACNGT 2 cut(s) 124, 395
TaqI TCGA 2 cut(s) 297, 728
TasI AATT 5 cut(s) 20, 188, 473, 565, 710
TfiI GAWTC 3 cut(s) 362, 373, 436
Tru1I TTAA 4 cut(s) 24, 159, 426, 447
Tru9I TTAA 4 cut(s) 24, 159, 426, 447
TseFI GTSAC 2 cut(s) 166, 552
Tsp45I GTSAC 2 cut(s) 166, 552
TspDTI ATGAA 4 cut(s) 501, 650, 682, 710
XapI RAATTY 2 cut(s) 565, 710
XceI RCATGY 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 689
XspI CTAG 4 cut(s) 114, 282, 498, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.