FvH4_4g11721

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017647
Physical Location & Seq
Forward (+)
15449914 .. 15452222
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11721.t1

Sequence Viewer

Length: 984 bp
ATGAAGTTTCGGAAGGCAATGACAGACTCTAACCTAATGGATATCGGACATACCGATGCAGATACACCTGACTCGGATCACTGCCCATTGCTTATTCAAGCGTTGAGTGAATGCCCTCAAAGGCAAAACAATCAGAAGCTGTTTCGTTTTGACCAAAATTGCTATGAAAGGGAGGATTGCAAAGCTATCATTCAAAAAGAATGGGCTGCCCCAACCACAGGGAATGCATTAGAACAAATTGGAACCAAGTGTAAAGCAATTGGAGATCAACTCCTAAACAAAAACTACTACATATGGCTTACAATACTCTACTATCTCAAGAAGAGAAATATTGGAGACAAAGATCTAGAGTTTTATAGCTACAAGAGGGCGACCGAAACTCAGCTTTCTTCCACAGGAAAGCATCCAACAGAGTGCAAAAACACCATCAAAGGTCTCAATGATAATCATGGCAATTGGAACTCGGACCCGGCAGAGGTTCAGCAACTTTTGGTTAATTATTTTCAGCAAATATTTACGGCTGAACAGGTTGACAACGATGGCATAGATTTGGTTTTGCAAAATGACAATATCTTATATGGATCAGCCAATGAAGTGGAATGTATGCAATACCGTGGCATTTTGGACATCTATGAGAAAGCTGCCGGCCAAAAAATAAATTATCTGAAGAGCAGTATTGTGTTTAATAAGAATGTGGCAGTAGAGCAGCAAGTCGGAACAAGACAGATATTTTTGAATATATCAAAGAGAGAGAGAGACACAAAAATTAGTGAGTTGGAAAACAAAGATTTTGAGTGCAGCCGCGATGCTTGCCAAGCAGGGGTGGATGCTCAGCTGGGAGACTCTCCTTTGTTTTCTTGGAGACGTATAATAAATGCAAGACCAGTGCTTCAGGCGGGAGTGCAACGGAATGTTGAAGAGAGAGCAATGGATACTGAATTGTCCAAGCTACATGGTGCAGAAGCCTGCCAATTGTATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

328

Amino Acids

37.4

Weight (kDa)

5.42

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 804
AciI CCGC 2 cut(s) 802, 896
AclWI GGATC 2 cut(s) 84, 589
AcoI YGGCCR 1 cut(s) 646
AcuI CTGAAG 2 cut(s) 686, 875
AfiI CCNNNNNNNGG 3 cut(s) 218, 475, 820
AgsI TTSAA 4 cut(s) 98, 194, 736, 917
AluBI AGCT 7 cut(s) 139, 185, 360, 385, 641, 835, 949
AluI AGCT 7 cut(s) 139, 185, 360, 385, 641, 835, 949
Alw26I GTCTC 5 cut(s) 330, 440, 750, 834, 856
AlwI GGATC 2 cut(s) 84, 589
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 1 cut(s) 646
ApeKI GCWGC 4 cut(s) 206, 641, 706, 798
AspS9I GGNCC 1 cut(s) 466
AsuC2I CCSGG 1 cut(s) 470
AvaII GGWCC 1 cut(s) 466
BbvI GCAGC 4 cut(s) 193, 628, 718, 810
BccI CCATC 2 cut(s) 434, 533
BceAI ACGGC 1 cut(s) 534
BciVI GTATCC 1 cut(s) 925
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 5 cut(s) 330, 440, 750, 834, 856
BfaI CTAG 1 cut(s) 347
BfuI GTATCC 1 cut(s) 925
BglII AGATCT 1 cut(s) 343
BisI GCNGC 5 cut(s) 207, 642, 707, 799, 802
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 5 cut(s) 208, 643, 708, 800, 803
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 466
BmiI GGNNCC 2 cut(s) 244, 468
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 4 cut(s) 46, 412, 796, 817
BplI GAGNNNNNCTC 2 cut(s) 255, 287
Bpu1102I GCTNAGC 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 470
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 613
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 475, 820
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 1 cut(s) 884
Bse3DI GCAATG 3 cut(s) 24, 86, 933
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 2 cut(s) 403, 832
BseLI CCNNNNNNNGG 3 cut(s) 218, 475, 820
BseMI GCAATG 3 cut(s) 24, 86, 933
BseMII CTCAG 2 cut(s) 395, 845
BseNI ACTGG 1 cut(s) 884
BseXI GCAGC 4 cut(s) 193, 628, 718, 810
BseYI CCCAGC 1 cut(s) 835
BsgI GTGCAG 2 cut(s) 817, 978
Bsh1236I CGCG 1 cut(s) 804
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 1 cut(s) 648
BsiEI CGRYCG 1 cut(s) 375
BsiSI CCGG 2 cut(s) 470, 645
BslI CCNNNNNNNGG 3 cut(s) 218, 475, 820
BsmAI GTCTC 5 cut(s) 330, 440, 750, 834, 856
BsmBI CGTCTC 1 cut(s) 856
BsmI GAATGC 2 cut(s) 116, 229
BsnI GGCC 1 cut(s) 648
Bso31I GGTCTC 1 cut(s) 440
Bsp143I GATC 4 cut(s) 76, 265, 343, 581
Bsp1720I GCTNAGC 1 cut(s) 831
BspACI CCGC 2 cut(s) 802, 896
BspANI GGCC 1 cut(s) 648
BspCNI CTCAG 2 cut(s) 394, 844
BspFNI CGCG 1 cut(s) 804
BspLI GGNNCC 2 cut(s) 244, 468
BspPI GGATC 2 cut(s) 84, 589
BspQI GCTCTTC 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 440
BsrDI GCAATG 3 cut(s) 24, 86, 933
BsrFI RCCGGY 1 cut(s) 644
BsrI ACTGG 1 cut(s) 884
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 4 cut(s) 76, 265, 343, 581
Bst4CI ACNGT 1 cut(s) 614
Bst6I CTCTTC 3 cut(s) 317, 662, 912
BstC8I GCNNGC 3 cut(s) 646, 811, 967
BstDEI CTNAG 2 cut(s) 381, 831
BstDSI CCRYGG 1 cut(s) 613
BstF5I GGATG 2 cut(s) 403, 832
BstFNI CGCG 1 cut(s) 804
BstKTI GATC 4 cut(s) 79, 268, 346, 584
BstMAI GTCTC 5 cut(s) 330, 440, 750, 834, 856
BstMBI GATC 4 cut(s) 76, 265, 343, 581
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 2 cut(s) 810, 815
BstSCI CCNGG 1 cut(s) 468
BstUI CGCG 1 cut(s) 804
BstV1I GCAGC 4 cut(s) 193, 628, 718, 810
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 1 cut(s) 343
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 613
BtgZI GCGATG 1 cut(s) 819
BtsCI GGATG 2 cut(s) 403, 832
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 79, 891
Cac8I GCNNGC 3 cut(s) 646, 811, 967
CaiI CAGNNNCTG 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 644
Cfr13I GGNCC 1 cut(s) 466
CviAII CATG 2 cut(s) 449, 953
DdeI CTNAG 2 cut(s) 381, 831
DpnI GATC 4 cut(s) 78, 267, 345, 583
DpnII GATC 4 cut(s) 76, 265, 343, 581
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 3 cut(s) 317, 662, 912
EarI CTCTTC 3 cut(s) 317, 662, 912
Eco31I GGTCTC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 466
Eco57I CTGAAG 2 cut(s) 686, 875
EcoRV GATATC 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 856
FaeI CATG 2 cut(s) 452, 956
FatI CATG 2 cut(s) 448, 952
FauI CCCGC 1 cut(s) 889
FauNDI CATATG 1 cut(s) 293
Fnu4HI GCNGC 5 cut(s) 207, 642, 707, 799, 802
FokI GGATG 2 cut(s) 390, 839
Fsp4HI GCNGC 5 cut(s) 207, 642, 707, 799, 802
FspBI CTAG 1 cut(s) 347
GluI GCNGC 5 cut(s) 207, 642, 707, 799, 802
GsaI CCCAGC 1 cut(s) 839
HaeIII GGCC 1 cut(s) 648
HapII CCGG 2 cut(s) 470, 645
Hin1II CATG 2 cut(s) 452, 956
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HinfI GANTC 3 cut(s) 26, 71, 842
HpaII CCGG 2 cut(s) 470, 645
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 7 cut(s) 12, 47, 76, 135, 466, 666, 716
Hpy188III TCNNGA 2 cut(s) 319, 347
Hpy8I GTNNAC 1 cut(s) 532
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 614
HpyCH4IV ACGT 1 cut(s) 865
HpyF10VI GCNNNNNNNGC 2 cut(s) 810, 815
HpyF3I CTNAG 2 cut(s) 381, 831
HpySE526I ACGT 1 cut(s) 865
Hsp92II CATG 2 cut(s) 452, 956
KroI GCCGGC 1 cut(s) 644
KroNI GCCGGC 1 cut(s) 646
Kzo9I GATC 4 cut(s) 76, 265, 343, 581
LguI GCTCTTC 1 cut(s) 662
Lsp1109I GCAGC 4 cut(s) 193, 628, 718, 810
LweI GCATC 4 cut(s) 46, 412, 796, 817
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 865
MalI GATC 4 cut(s) 78, 267, 345, 583
MboI GATC 4 cut(s) 76, 265, 343, 581
MboII GAAGA 4 cut(s) 334, 381, 679, 929
MfeI CAATTG 3 cut(s) 258, 454, 971
MflI RGATCY 1 cut(s) 343
MluCI AATT 9 cut(s) 157, 237, 258, 454, 496, 658, 765, 938, 971
MlyI GAGTC 3 cut(s) 20, 65, 836
MmeI TCCRAC 3 cut(s) 431, 694, 756
MnlI CCTC 4 cut(s) 126, 166, 360, 469
Mph1103I ATGCAT 1 cut(s) 229
MroNI GCCGGC 1 cut(s) 644
MseI TTAA 2 cut(s) 495, 684
MslI CAYNNNNRTG 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 835
MspI CCGG 2 cut(s) 470, 645
MspR9I CCNGG 1 cut(s) 470
MunI CAATTG 3 cut(s) 258, 454, 971
Mva1269I GAATGC 2 cut(s) 116, 229
MvnI CGCG 1 cut(s) 804
MwoI GCNNNNNNNGC 2 cut(s) 810, 815
NaeI GCCGGC 1 cut(s) 646
NciI CCSGG 1 cut(s) 470
NdeI CATATG 1 cut(s) 293
NdeII GATC 4 cut(s) 76, 265, 343, 581
NgoMIV GCCGGC 1 cut(s) 644
NlaIII CATG 2 cut(s) 452, 956
NlaIV GGNNCC 2 cut(s) 244, 468
NsiI ATGCAT 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 662
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 2 cut(s) 116, 229
PdiI GCCGGC 1 cut(s) 646
PkrI GCNGC 5 cut(s) 208, 643, 708, 800, 803
PleI GAGTC 3 cut(s) 20, 65, 836
PpsI GAGTC 3 cut(s) 20, 65, 836
PspFI CCCAGC 1 cut(s) 835
PspN4I GGNNCC 2 cut(s) 244, 468
PspPI GGNCC 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 835
RseI CAYNNNNRTG 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 662
SaqAI TTAA 2 cut(s) 495, 684
SatI GCNGC 5 cut(s) 207, 642, 707, 799, 802
Sau3AI GATC 4 cut(s) 76, 265, 343, 581
Sau96I GGNCC 1 cut(s) 466
SchI GAGTC 3 cut(s) 20, 65, 836
ScrFI CCNGG 1 cut(s) 470
SfaNI GCATC 4 cut(s) 46, 412, 796, 817
SinI GGWCC 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 9 cut(s) 157, 237, 258, 454, 496, 658, 765, 938, 971
SsiI CCGC 2 cut(s) 802, 896
SspI AATATT 2 cut(s) 331, 513
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 614
TaiI ACGT 1 cut(s) 868
TaqII GACCGA 1 cut(s) 389
TasI AATT 9 cut(s) 157, 237, 258, 454, 496, 658, 765, 938, 971
TauI GCSGC 1 cut(s) 804
Tru1I TTAA 2 cut(s) 495, 684
Tru9I TTAA 2 cut(s) 495, 684
TscAI CASTG 2 cut(s) 86, 891
TseI GCWGC 4 cut(s) 206, 641, 706, 798
TspDTI ATGAA 3 cut(s) 17, 180, 606
TspGWI ACGGA 1 cut(s) 922
TspRI CASTG 2 cut(s) 86, 891
VpaK11BI GGWCC 1 cut(s) 466
XbaI TCTAGA 1 cut(s) 346
XspI CTAG 1 cut(s) 347
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.