Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006266.1

Orthogroup ID

OG0017647

Physical Location & Seq

Genomic Coordinates Reverse (-)

229837 .. 231723

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006266.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgagaccacaagcacttgttctccaccatctcttctttgcagatgacagccttctttttggcgctgctaccatggagcagtgtatgtcaattaaagacattctcaatacatatgaaagggcttcaggacaaaaagtacgttttactaaaagcagtgttgtttttagtaataatgtgcaacctcacctgaaggaaacccttgcttcattgttggaagttaaatgtgttgatgaacatgatcgctaccttgggctgcccttaagggtgtacaaagctaggtgctttcccaactgttctttttgggaggctgatttgggtgatgcaccatcatattcatggaggagtattcttgaaggcagaccacttctcaaagcaggtgttacttggaggattggtgacggaactcaagttaacatttggaagcatcattgggtcccaaattgcccaagttacatgattcagaaaccacaagctgagcaggttctatgtattccattgagtcaacacaccatgccagaccgcttgagttggagccctgaaaagcgaggatctttcactgtaaagagtgcttattggatagcgcgtcaaaaagtgttaggcaatgttttagcgtcatcctcaaatggtgatccgtttaaggaactgtggaagcgcctttggaacgcaagtgtccccggaaaagttcacatatgtgtttggagggcatctatgctaattagtctacgacctaccaccactcaatctacctctgcgttacagttagtgactgggaacgacatgaattatcgtattttgtccccactatgtctcatctcaatccctgttcaagtgacaagatcacacaaatatgctgcaaacatgtctgcaaggaagaacgtccttacgagaggaagtagcaccaccctacacggaggtaggcatgacgccaactccaaagagagtggcactctggcgttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

319

Amino Acids

35.88

Weight (kDa)

9.61

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11721
rosa_multiflora	Rmu_co7974714.1_g000001 Rmu_sc0001035.1_g000077 Rmu_sc0002401.1_g000026 Rmu_sc0004516.1_g000004 Rmu_sc0006266.1_g000056 Rmu_ssc0000054.1_g000017 Rmu_ssc0000215.1_g000012
rosa_rugosa	Rorug02G0436100 Rorug05G0153400 Rorug06G0073500 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
Acc36I	ACCTGC	2 cut(s)	365, 469
AccI	GTMKAC	1 cut(s)	721
AccII	CGCG	1 cut(s)	583
AciI	CCGC	1 cut(s)	520
AclWI	GGATC	2 cut(s)	556, 623
AcuI	CTGAAG	2 cut(s)	108, 209
AcyI	GRCGYC	1 cut(s)	924
AfaI	GTAC	2 cut(s)	138, 269
AflII	CTTAAG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	858
AgsI	TTSAA	2 cut(s)	353, 827
AleI	CACNNNNGTG	1 cut(s)	690
AluBI	AGCT	2 cut(s)	275, 473
AluI	AGCT	2 cut(s)	275, 473
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	2 cut(s)	556, 623
ApeKI	GCWGC	3 cut(s)	65, 253, 851
AspLEI	GCGC	3 cut(s)	65, 583, 654
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	675
AsuHPI	GGTGA	4 cut(s)	176, 329, 407, 638
AvaII	GGWCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	52, 240, 838
BccI	CCATC	2 cut(s)	36, 334
BcnI	CCSGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	812
BfaI	CTAG	1 cut(s)	276
BfoI	RGCGCY	2 cut(s)	66, 655
BfrI	CTTAAG	1 cut(s)	259
BfuAI	ACCTGC	2 cut(s)	365, 469
BisI	GCNGC	3 cut(s)	66, 254, 852
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	3 cut(s)	67, 255, 853
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	3 cut(s)	434, 435, 533
BmrFI	CCNGG	1 cut(s)	675
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	3 cut(s)	310, 433, 713
BmuI	ACTGGG	1 cut(s)	777
BplI	GAGNNNNNCTC	1 cut(s)	931
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	390, 544
BpuMI	CCSGG	1 cut(s)	675
BsaHI	GRCGYC	1 cut(s)	924
BsaJI	CCNNGG	3 cut(s)	72, 247, 673
BsaXI	ACNNNNNCTCC	6 cut(s)	6, 36, 379, 409, 914, 944
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	1 cut(s)	607
BseDI	CCNNGG	3 cut(s)	72, 247, 673
BseGI	GGATG	1 cut(s)	614
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	52, 240, 838
Bsh1236I	CGCG	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	675
BslFI	GGGAC	3 cut(s)	419, 656, 781
BsmAI	GTCTC	1 cut(s)	812
BsmFI	GGGAC	3 cut(s)	419, 656, 781
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	238, 548, 628, 836
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	520
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	434, 435, 533
BspMI	ACCTGC	2 cut(s)	365, 469
BspPI	GGATC	2 cut(s)	556, 623
BspTI	CTTAAG	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	607
BsrGI	TGTACA	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	3 cut(s)	72, 247, 673
BssMI	GATC	4 cut(s)	238, 548, 628, 836
BssNI	GRCGYC	1 cut(s)	924
BssT1I	CCWWGG	2 cut(s)	72, 247
Bst4CI	ACNGT	4 cut(s)	293, 559, 645, 759
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	924
BstAFI	CTTAAG	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	614
BstFNI	CGCG	1 cut(s)	583
BstH2I	RGCGCY	2 cut(s)	66, 655
BstHHI	GCGC	3 cut(s)	65, 583, 654
BstKTI	GATC	4 cut(s)	241, 551, 631, 839
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	4 cut(s)	238, 548, 628, 836
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	1 cut(s)	673
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	3 cut(s)	52, 240, 838
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	614
BtsI	GCAGTG	2 cut(s)	86, 160
BtsIMutI	CAGTG	3 cut(s)	86, 160, 555
BveI	ACCTGC	2 cut(s)	365, 469
CfoI	GCGC	3 cut(s)	65, 583, 654
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	3 cut(s)	572, 600, 932
Csp6I	GTAC	2 cut(s)	137, 268
CspCI	CAANNNNNGTGG	2 cut(s)	922, 957
CviAII	CATG	8 cut(s)	73, 236, 336, 454, 511, 778, 859, 920
CviJI	RGCY	7 cut(s)	51, 122, 253, 275, 308, 473, 534
CviKI_1	RGCY	7 cut(s)	51, 122, 253, 275, 308, 473, 534
CviQI	GTAC	2 cut(s)	137, 268
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	4 cut(s)	240, 550, 630, 838
DpnII	GATC	4 cut(s)	238, 548, 628, 836
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	72, 247
Eco24I	GRGCYC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	108, 209
EcoO109I	RGGNCCY	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	72, 247
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	2 cut(s)	72, 247
FaeI	CATG	8 cut(s)	76, 239, 339, 457, 514, 781, 862, 923
FaqI	GGGAC	3 cut(s)	419, 656, 781
FatI	CATG	8 cut(s)	72, 235, 335, 453, 510, 777, 858, 919
FauNDI	CATATG	2 cut(s)	112, 689
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	66, 254, 852
FokI	GGATG	1 cut(s)	601
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	3 cut(s)	66, 254, 852
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	3 cut(s)	64, 582, 653
GluI	GCNGC	3 cut(s)	66, 254, 852
HaeII	RGCGCY	2 cut(s)	66, 655
HapII	CCGG	1 cut(s)	675
HgaI	GACGC	3 cut(s)	572, 600, 932
HhaI	GCGC	3 cut(s)	65, 583, 654
Hin1I	GRCGYC	1 cut(s)	924
Hin1II	CATG	8 cut(s)	76, 239, 339, 457, 514, 781, 862, 923
Hin6I	GCGC	3 cut(s)	63, 581, 652
HinP1I	GCGC	3 cut(s)	63, 581, 652
HincII	GTYRAC	2 cut(s)	412, 503
HindII	GTYRAC	2 cut(s)	412, 503
HinfI	GANTC	2 cut(s)	457, 499
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	4 cut(s)	176, 329, 407, 638
Hpy166II	GTNNAC	5 cut(s)	268, 412, 503, 685, 722
Hpy188I	TCNGA	1 cut(s)	462
Hpy188III	TCNNGA	2 cut(s)	126, 350
Hpy8I	GTNNAC	5 cut(s)	268, 412, 503, 685, 722
HpyAV	CCTTC	3 cut(s)	62, 184, 347
HpyCH4III	ACNGT	4 cut(s)	293, 559, 645, 759
HpyCH4IV	ACGT	2 cut(s)	139, 876
HpyCH4V	TGCA	5 cut(s)	41, 178, 323, 854, 866
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	2 cut(s)	139, 876
Hsp92I	GRCGYC	1 cut(s)	924
Hsp92II	CATG	8 cut(s)	76, 239, 339, 457, 514, 781, 862, 923
HspAI	GCGC	3 cut(s)	63, 581, 652
KflI	GGGWCCC	1 cut(s)	433
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	238, 548, 628, 836
LmnI	GCTCC	2 cut(s)	76, 531
Lsp1109I	GCAGC	3 cut(s)	52, 240, 838
LweI	GCATC	3 cut(s)	310, 433, 713
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	2 cut(s)	139, 876
MaeIII	GTNAC	6 cut(s)	379, 395, 449, 753, 763, 829
MalI	GATC	4 cut(s)	240, 550, 630, 838
MboI	GATC	4 cut(s)	238, 548, 628, 836
MboII	GAAGA	2 cut(s)	25, 883
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	4 cut(s)	90, 439, 714, 781
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	2 cut(s)	192, 509
MseI	TTAA	5 cut(s)	93, 219, 260, 411, 636
MslI	CAYNNNNRTG	3 cut(s)	334, 690, 846
MspCI	CTTAAG	1 cut(s)	259
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	1 cut(s)	675
MvnI	CGCG	1 cut(s)	583
NciI	CCSGG	1 cut(s)	675
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	2 cut(s)	112, 689
NdeII	GATC	4 cut(s)	238, 548, 628, 836
NlaIII	CATG	8 cut(s)	76, 239, 339, 457, 514, 781, 862, 923
NlaIV	GGNNCC	3 cut(s)	434, 435, 533
NmuCI	GTSAC	3 cut(s)	395, 763, 829
NspI	RCATGY	1 cut(s)	862
OliI	CACNNNNGTG	1 cut(s)	690
PaqCI	CACCTGC	1 cut(s)	365
PciI	ACATGT	1 cut(s)	858
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	3 cut(s)	67, 255, 853
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
PpuMI	RGGWCCY	1 cut(s)	433
PscI	ACATGT	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	434, 435, 533
PspPI	GGNCC	1 cut(s)	433
PspPPI	RGGWCCY	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	2 cut(s)	138, 269
RsaNI	GTAC	2 cut(s)	137, 268
RseI	CAYNNNNRTG	3 cut(s)	334, 690, 846
SaqAI	TTAA	5 cut(s)	93, 219, 260, 411, 636
SatI	GCNGC	3 cut(s)	66, 254, 852
Sau3AI	GATC	4 cut(s)	238, 548, 628, 836
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	536
SfaNI	GCATC	3 cut(s)	310, 433, 713
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	3 cut(s)	334, 690, 846
SmlI	CTYRAG	3 cut(s)	259, 405, 523
SmoI	CTYRAG	3 cut(s)	259, 405, 523
Sse9I	AATT	4 cut(s)	90, 439, 714, 781
SsiI	CCGC	1 cut(s)	520
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	2 cut(s)	72, 247
TaaI	ACNGT	4 cut(s)	293, 559, 645, 759
TaiI	ACGT	2 cut(s)	142, 879
TasI	AATT	4 cut(s)	90, 439, 714, 781
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	5 cut(s)	93, 219, 260, 411, 636
Tru9I	TTAA	5 cut(s)	93, 219, 260, 411, 636
TscAI	CASTG	3 cut(s)	86, 160, 562
TseFI	GTSAC	3 cut(s)	395, 763, 829
TseI	GCWGC	3 cut(s)	65, 253, 851
Tsp45I	GTSAC	3 cut(s)	395, 763, 829
TspDTI	ATGAA	5 cut(s)	129, 195, 246, 324, 794
TspGWI	ACGGA	3 cut(s)	414, 621, 924
TspRI	CASTG	3 cut(s)	86, 160, 562
Vha464I	CTTAAG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	433
XceI	RCATGY	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	721
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.