ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g11721 |
| rosa_multiflora | Rmu_co7974714.1_g000001 Rmu_sc0001035.1_g000077 Rmu_sc0002401.1_g000026 Rmu_sc0004516.1_g000004 Rmu_sc0006266.1_g000056 Rmu_ssc0000054.1_g000017 Rmu_ssc0000215.1_g000012 |
| rosa_rugosa | Rorug02G0436100 Rorug05G0153400 Rorug06G0073500 Rorug07G0294900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 82 |
| AfeI | AGCGCT | 1 cut(s) | 136 |
| AflIII | ACRYGT | 2 cut(s) | 37, 120 |
| AgsI | TTSAA | 2 cut(s) | 11, 257 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 194, 226 |
| AluBI | AGCT | 1 cut(s) | 356 |
| AluI | AGCT | 1 cut(s) | 356 |
| Alw26I | GTCTC | 1 cut(s) | 270 |
| Aor51HI | AGCGCT | 1 cut(s) | 136 |
| AspLEI | GCGC | 1 cut(s) | 137 |
| AsuHPI | GGTGA | 2 cut(s) | 169, 217 |
| BaeGI | GKGCMC | 1 cut(s) | 85 |
| BanI | GGYRCC | 1 cut(s) | 82 |
| BccI | CCATC | 1 cut(s) | 71 |
| BclI | TGATCA | 1 cut(s) | 159 |
| BcoDI | GTCTC | 1 cut(s) | 270 |
| BfaI | CTAG | 1 cut(s) | 195 |
| BfmI | CTRYAG | 1 cut(s) | 143 |
| BfoI | RGCGCY | 1 cut(s) | 138 |
| BmiI | GGNNCC | 1 cut(s) | 84 |
| BsaBI | GATNNNNATC | 1 cut(s) | 346 |
| Bse8I | GATNNNNATC | 1 cut(s) | 346 |
| BseJI | GATNNNNATC | 1 cut(s) | 346 |
| BseRI | GAGGAG | 1 cut(s) | 240 |
| BseSI | GKGCMC | 1 cut(s) | 85 |
| BshNI | GGYRCC | 1 cut(s) | 82 |
| BsmAI | GTCTC | 1 cut(s) | 270 |
| Bsp1286I | GDGCHC | 1 cut(s) | 85 |
| Bsp143I | GATC | 2 cut(s) | 159, 341 |
| BspLI | GGNNCC | 1 cut(s) | 84 |
| BspMAI | CTGCAG | 1 cut(s) | 147 |
| BspT107I | GGYRCC | 1 cut(s) | 82 |
| BssMI | GATC | 2 cut(s) | 159, 341 |
| Bst4CI | ACNGT | 1 cut(s) | 54 |
| BstDEI | CTNAG | 1 cut(s) | 384 |
| BstH2I | RGCGCY | 1 cut(s) | 138 |
| BstHHI | GCGC | 1 cut(s) | 137 |
| BstKTI | GATC | 2 cut(s) | 162, 344 |
| BstMAI | GTCTC | 1 cut(s) | 270 |
| BstMBI | GATC | 2 cut(s) | 159, 341 |
| BstNSI | RCATGY | 2 cut(s) | 41, 124 |
| BstSFI | CTRYAG | 1 cut(s) | 143 |
| BstSLI | GKGCMC | 1 cut(s) | 85 |
| BtsI | GCAGTG | 1 cut(s) | 229 |
| BtsIMutI | CAGTG | 2 cut(s) | 229, 241 |
| CfoI | GCGC | 1 cut(s) | 137 |
| CviAII | CATG | 2 cut(s) | 38, 121 |
| CviJI | RGCY | 2 cut(s) | 198, 356 |
| CviKI_1 | RGCY | 2 cut(s) | 198, 356 |
| DdeI | CTNAG | 1 cut(s) | 384 |
| DpnI | GATC | 2 cut(s) | 161, 343 |
| DpnII | GATC | 2 cut(s) | 159, 341 |
| Eco32I | GATATC | 1 cut(s) | 30 |
| Eco47III | AGCGCT | 1 cut(s) | 136 |
| EcoRV | GATATC | 1 cut(s) | 30 |
| FaeI | CATG | 2 cut(s) | 41, 124 |
| FaiI | YATR | 9 cut(s) | 39, 122, 168, 181, 183, 306, 333, 364, 366 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 194, 226, 299, 331 |
| FatI | CATG | 2 cut(s) | 37, 120 |
| FbaI | TGATCA | 1 cut(s) | 159 |
| FspBI | CTAG | 1 cut(s) | 195 |
| GlaI | GCGC | 1 cut(s) | 136 |
| HaeII | RGCGCY | 1 cut(s) | 138 |
| HhaI | GCGC | 1 cut(s) | 137 |
| Hin1II | CATG | 2 cut(s) | 41, 124 |
| Hin6I | GCGC | 1 cut(s) | 135 |
| HinP1I | GCGC | 1 cut(s) | 135 |
| HindIII | AAGCTT | 1 cut(s) | 354 |
| HphI | GGTGA | 2 cut(s) | 169, 217 |
| Hpy166II | GTNNAC | 2 cut(s) | 65, 208 |
| Hpy188I | TCNGA | 2 cut(s) | 130, 352 |
| Hpy188III | TCNNGA | 1 cut(s) | 254 |
| Hpy8I | GTNNAC | 2 cut(s) | 65, 208 |
| HpyAV | CCTTC | 3 cut(s) | 5, 196, 388 |
| HpyCH4III | ACNGT | 1 cut(s) | 54 |
| HpyCH4V | TGCA | 3 cut(s) | 145, 175, 304 |
| HpyF3I | CTNAG | 1 cut(s) | 384 |
| Hsp92II | CATG | 2 cut(s) | 41, 124 |
| HspAI | GCGC | 1 cut(s) | 135 |
| Ksp22I | TGATCA | 1 cut(s) | 159 |
| Kzo9I | GATC | 2 cut(s) | 159, 341 |
| LpnPI | CCDG | 4 cut(s) | 53, 131, 155, 212 |
| MaeI | CTAG | 1 cut(s) | 195 |
| MaeIII | GTNAC | 1 cut(s) | 95 |
| MalI | GATC | 2 cut(s) | 161, 343 |
| MboI | GATC | 2 cut(s) | 159, 341 |
| MhlI | GDGCHC | 1 cut(s) | 85 |
| MnlI | CCTC | 3 cut(s) | 258, 261, 292 |
| MseI | TTAA | 1 cut(s) | 369 |
| MslI | CAYNNNNRTG | 1 cut(s) | 42 |
| NdeII | GATC | 2 cut(s) | 159, 341 |
| NlaIII | CATG | 2 cut(s) | 41, 124 |
| NlaIV | GGNNCC | 1 cut(s) | 84 |
| NmuCI | GTSAC | 1 cut(s) | 95 |
| NspI | RCATGY | 2 cut(s) | 41, 124 |
| PciI | ACATGT | 2 cut(s) | 37, 120 |
| PscI | ACATGT | 2 cut(s) | 37, 120 |
| PspN4I | GGNNCC | 1 cut(s) | 84 |
| PstI | CTGCAG | 1 cut(s) | 147 |
| RseI | CAYNNNNRTG | 1 cut(s) | 42 |
| SaqAI | TTAA | 1 cut(s) | 369 |
| Sau3AI | GATC | 2 cut(s) | 159, 341 |
| SbfI | CCTGCAGG | 1 cut(s) | 147 |
| SdaI | CCTGCAGG | 1 cut(s) | 147 |
| SduI | GDGCHC | 1 cut(s) | 85 |
| SetI | ASST | 6 cut(s) | 16, 72, 88, 207, 303, 358 |
| SfcI | CTRYAG | 1 cut(s) | 143 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 42 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 147 |
| SspMI | CTAG | 1 cut(s) | 195 |
| TaaI | ACNGT | 1 cut(s) | 54 |
| Tru1I | TTAA | 1 cut(s) | 369 |
| Tru9I | TTAA | 1 cut(s) | 369 |
| TscAI | CASTG | 2 cut(s) | 229, 241 |
| TseFI | GTSAC | 1 cut(s) | 95 |
| Tsp45I | GTSAC | 1 cut(s) | 95 |
| TspDTI | ATGAA | 1 cut(s) | 351 |
| TspRI | CASTG | 2 cut(s) | 229, 241 |
| XceI | RCATGY | 2 cut(s) | 41, 124 |
| XspI | CTAG | 1 cut(s) | 195 |