Rmu_sc0002401.1_g000026

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002401.1
OG0017647
Physical Location & Seq
Reverse (-)
80233 .. 81101
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002401.1_g000026.1.cds

Sequence Viewer

Length: 450 bp
atgtctcatacggctccaactctgcatcacttgttctttgctgatgatagcttcttgtttggcaccgcaactgtggctgaatgcattagctatcgaaatattttagacatttatgaaagaccatatggtcaaaaggtgaactttcataagagcagtgtggtgtttagcaacaatgtaaggatggagactcaattacagctagcagagtttttagctgtgaagagagttcctaagcatgacagatatttgggcttacctttgagggtggaactcggagactcaccttcattctcatggaggagcattattaatggaagacctgtccttaaagccgcggttcaatggaagattggggatggaaaacaggtggacttgtgggtagatagatggattcctacaattcaacagtttcgggtccaaaagcctcctaactcaccttttgataagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

149

Amino Acids

17.21

Weight (kDa)

9.51

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 62
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 66, 333, 335
AgsI TTSAA 2 cut(s) 341, 404
AluBI AGCT 4 cut(s) 51, 90, 199, 215
AluI AGCT 4 cut(s) 51, 90, 199, 215
Alw26I GTCTC 3 cut(s) 9, 179, 270
AseI ATTAAT 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 3 cut(s) 148, 273, 426
AsuNHI GCTAGC 1 cut(s) 199
AvaII GGWCC 1 cut(s) 415
BanI GGYRCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 322
BccI CCATC 3 cut(s) 175, 350, 381
BceAI ACGGC 1 cut(s) 27
BcoDI GTCTC 3 cut(s) 9, 179, 270
BfaI CTAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 3 cut(s) 15, 64, 416
BmsI GCATC 1 cut(s) 34
BmtI GCTAGC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 186, 361
BseRI GAGGAG 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 335
BshNI GGYRCC 1 cut(s) 62
BsmAI GTCTC 3 cut(s) 9, 179, 270
BsmI GAATGC 1 cut(s) 86
BspACI CCGC 3 cut(s) 66, 333, 335
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 3 cut(s) 15, 64, 416
BspOI GCTAGC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 73, 408
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 2 cut(s) 186, 361
BstFNI CGCG 1 cut(s) 335
BstMAI GTCTC 3 cut(s) 9, 179, 270
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstUI CGCG 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 186, 361
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 415
Cfr42I CCGCGG 1 cut(s) 336
CviAII CATG 2 cut(s) 236, 294
CviJI RGCY 9 cut(s) 14, 51, 77, 90, 199, 215, 252, 332, 424
CviKI_1 RGCY 9 cut(s) 14, 51, 77, 90, 199, 215, 252, 332, 424
DdeI CTNAG 1 cut(s) 231
DrdI GACNNNNNNGTC 1 cut(s) 126
DseDI GACNNNNNNGTC 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 415
EcoT22I ATGCAT 1 cut(s) 86
FaeI CATG 2 cut(s) 239, 297
FaiI YATR 7 cut(s) 9, 114, 124, 126, 147, 237, 295
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FatI CATG 2 cut(s) 235, 293
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 2 cut(s) 193, 368
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 239, 297
HinfI GANTC 3 cut(s) 187, 278, 391
HphI GGTGA 3 cut(s) 148, 273, 426
Hpy166II GTNNAC 2 cut(s) 139, 370
Hpy188I TCNGA 1 cut(s) 275
Hpy8I GTNNAC 2 cut(s) 139, 370
HpyAV CCTTC 1 cut(s) 294
HpyCH4III ACNGT 2 cut(s) 73, 408
HpyCH4V TGCA 2 cut(s) 25, 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 239, 297
KspI CCGCGG 1 cut(s) 336
LmnI GCTCC 2 cut(s) 19, 300
LpnPI CCDG 2 cut(s) 333, 350
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 200
MboII GAAGA 3 cut(s) 232, 327, 358
MluCI AATT 2 cut(s) 191, 399
MlyI GAGTC 2 cut(s) 181, 272
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 3 cut(s) 255, 291, 435
Mph1103I ATGCAT 1 cut(s) 86
MseI TTAA 2 cut(s) 309, 327
MslI CAYNNNNRTG 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 86
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeI CATATG 1 cut(s) 124
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 239, 297
NlaIV GGNNCC 3 cut(s) 15, 64, 416
NsiI ATGCAT 1 cut(s) 86
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 2 cut(s) 181, 272
PpsI GAGTC 2 cut(s) 181, 272
PshBI ATTAAT 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 15, 64, 416
PspPI GGNCC 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 292
SacII CCGCGG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 309, 327
SatI GCNGC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 2 cut(s) 181, 272
SfaNI GCATC 1 cut(s) 34
Sfr303I CCGCGG 1 cut(s) 336
SgrBI CCGCGG 1 cut(s) 336
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 292
Sse9I AATT 2 cut(s) 191, 399
SsiI CCGC 3 cut(s) 66, 333, 335
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 73, 408
TaqI TCGA 1 cut(s) 94
TasI AATT 2 cut(s) 191, 399
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 309, 327
Tru9I TTAA 2 cut(s) 309, 327
TscAI CASTG 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 129, 134, 276
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 415
VspI ATTAAT 1 cut(s) 309
XspI CTAG 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.