Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000215.1

Orthogroup ID

OG0017647

Physical Location & Seq

Genomic Coordinates Reverse (-)

66824 .. 67493

Gene Structure 670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000215.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgggcatgcttacgactagtctcactaagcttgggtttgccactcaatggatcaacatggtgatgacctatgtgacctctgttagttatgccatcgtggttaacggcaaggtttcttctacaattatcccaaagagagatgatagtcttctctttggggcagctactatggaggagtgtattgttattaagggaatacttaacacctatgaaagtgcttcgggacagaaggtaaactttactaagagtagtgttgtttttagtaacaatattcagcatcaattgaaggctactctagctgctattttgggggtaaagtgtgtggaagagcataatcgatatttgggattgccgctgcgagttggacgatccaaaactaagaggttccaatacttaaaagaaaaagtatccaaaaagttgatgaattggaagtccaagattcttagttgcgccggtaaagagattcttagttgcgccggtaaagaaattcttatcaaagcagttgctcaaccttcttcccaaaggtttgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

177

Amino Acids

19.54

Weight (kDa)

9.88

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11721
rosa_multiflora	Rmu_co7974714.1_g000001 Rmu_sc0001035.1_g000077 Rmu_sc0002401.1_g000026 Rmu_sc0004516.1_g000004 Rmu_sc0006266.1_g000056 Rmu_ssc0000054.1_g000017 Rmu_ssc0000215.1_g000012
rosa_rugosa	Rorug02G0436100 Rorug05G0153400 Rorug06G0073500 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	48
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	2 cut(s)	59, 363
AcsI	RAATTY	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	286
AhlI	ACTAGT	1 cut(s)	17
AluBI	AGCT	3 cut(s)	31, 164, 299
AluI	AGCT	3 cut(s)	31, 164, 299
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	59, 363
ApeKI	GCWGC	3 cut(s)	161, 299, 355
ApoI	RAATTY	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	452, 476
AsuHPI	GGTGA	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	173, 286, 342
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	2 cut(s)	18, 296
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	4 cut(s)	162, 300, 353, 356
BlsI	GCNGC	4 cut(s)	163, 301, 354, 357
BmiI	GGNNCC	1 cut(s)	386
BmsI	GCATC	1 cut(s)	286
BpiI	GAAGAC	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse118I	RCCGGY	2 cut(s)	452, 476
BseCI	ATCGAT	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	3 cut(s)	173, 286, 342
BshVI	ATCGAT	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	453, 477
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	51, 368
BspACI	CCGC	1 cut(s)	353
BspDI	ATCGAT	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	59, 363
BspQI	GCTCTTC	1 cut(s)	321
BsrFI	RCCGGY	2 cut(s)	452, 476
BssAI	RCCGGY	2 cut(s)	452, 476
BssMI	GATC	2 cut(s)	51, 368
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	5 cut(s)	27, 243, 378, 443, 467
BstHHI	GCGC	2 cut(s)	452, 476
BstKTI	GATC	2 cut(s)	54, 371
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	2 cut(s)	51, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	173, 286, 342
BstV2I	GAAGAC	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	418
BsuTUI	ATCGAT	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	8
CfoI	GCGC	2 cut(s)	452, 476
Cfr10I	RCCGGY	2 cut(s)	452, 476
ClaI	ATCGAT	1 cut(s)	337
CviAII	CATG	2 cut(s)	7, 58
CviJI	RGCY	4 cut(s)	31, 164, 290, 299
CviKI_1	RGCY	4 cut(s)	31, 164, 290, 299
DdeI	CTNAG	5 cut(s)	27, 243, 378, 443, 467
DpnI	GATC	2 cut(s)	53, 370
DpnII	GATC	2 cut(s)	51, 368
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
FaeI	CATG	2 cut(s)	10, 61
FaiI	YATR	7 cut(s)	8, 59, 72, 90, 170, 210, 333
FalI	AAGNNNNNCTT	6 cut(s)	221, 253, 450, 482, 474, 506
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	2 cut(s)	6, 57
Fnu4HI	GCNGC	4 cut(s)	162, 300, 353, 356
Fsp4HI	GCNGC	4 cut(s)	162, 300, 353, 356
FspBI	CTAG	2 cut(s)	18, 296
GlaI	GCGC	2 cut(s)	451, 475
GluI	GCNGC	4 cut(s)	162, 300, 353, 356
HapII	CCGG	2 cut(s)	453, 477
HhaI	GCGC	2 cut(s)	452, 476
Hin1II	CATG	2 cut(s)	10, 61
Hin6I	GCGC	2 cut(s)	450, 474
HinP1I	GCGC	2 cut(s)	450, 474
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	439, 463
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	453, 477
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	103, 235
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	2 cut(s)	103, 235
HpyAV	CCTTC	3 cut(s)	223, 280, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	5 cut(s)	27, 243, 378, 443, 467
Hsp92II	CATG	2 cut(s)	10, 61
HspAI	GCGC	2 cut(s)	450, 474
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	51, 368
LguI	GCTCTTC	1 cut(s)	321
LpnPI	CCDG	2 cut(s)	466, 490
Lsp1109I	GCAGC	3 cut(s)	173, 286, 342
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	18, 296
MaeIII	GTNAC	2 cut(s)	73, 263
MalI	GATC	2 cut(s)	53, 370
MboI	GATC	2 cut(s)	51, 368
MboII	GAAGA	4 cut(s)	108, 140, 338, 507
MfeI	CAATTG	1 cut(s)	281
MluCI	AATT	4 cut(s)	123, 281, 424, 486
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	3 cut(s)	88, 166, 375
MseI	TTAA	4 cut(s)	102, 189, 201, 395
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	2 cut(s)	453, 477
MunI	CAATTG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	2 cut(s)	51, 368
NlaIII	CATG	2 cut(s)	10, 61
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	10
PaeI	GCATGC	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	439, 463
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	4 cut(s)	163, 301, 354, 357
PspN4I	GGNNCC	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	102, 189, 201, 395
SatI	GCNGC	4 cut(s)	162, 300, 353, 356
Sau3AI	GATC	2 cut(s)	51, 368
SfaNI	GCATC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	62
SpeI	ACTAGT	1 cut(s)	17
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	4 cut(s)	123, 281, 424, 486
SsiI	CCGC	1 cut(s)	353
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	18, 296
TaqI	TCGA	1 cut(s)	337
TasI	AATT	4 cut(s)	123, 281, 424, 486
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	439, 463
Tru1I	TTAA	4 cut(s)	102, 189, 201, 395
Tru9I	TTAA	4 cut(s)	102, 189, 201, 395
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	161, 299, 355
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	225, 437
Van91I	CCANNNNNTGG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	10
XspI	CTAG	2 cut(s)	18, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.