FvH4_4g12420

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014357
Physical Location & Seq
Reverse (-)
16110163 .. 16113225
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12420.t1

Sequence Viewer

Length: 1440 bp
ATGGCGTTGTTGTTGCCTTTCTCATCGCAAAACTTTTTGCCCATTGCTTCTTTCCGTTCTGACTTCCTTCCTTGGAATCCTCACTTATTTGAAGTCAGCAGAAATCATAAAAACATCAGTAAAACCAAAAACATCTCTTTTCCAATTTCTTGCTCATCTGTTAAAACTGTCCGTAGTCCTTCACTAGACAGGCATATTGTGAAACAGAACAAGATTCGGTTTGTCCTAAAACTACAAACACTGCTCCTTTCCAAACCAAAATGCTATATTCCACTTCAGATTCTTAATAAATGTCGATCCTACCTTTCCCTACCAAAGCCCCGGTCCATCCTTTCGATGATCCATCGTTACCCTACCATTTTTGAAGTCTTCTCAATTCCTACAGCACCTATGCCATTCAATGCATCTAAGTCATTATCACAACTCTGTGTCCGTCTAACCCCAGCTGCGGCTGCCCTTGCTGCTGAGGAATCAAGTCTAAGATCAGCCATCTCTGATTCCTTGGCTACCAAACTCCAGAAACTTCTTATGCTTTCTTCTCATCATCGGCTAGTTCTGTCAAAGTTGGTTCACCTTGGTCCTGATCTTGGTCTTCACCCTAACTTTCGGTCTCGTCTCTGCAATGACCATCCAGAAAAATTCAAGACTATAGATACCTCTTATGGTCGTGCACTTGAGCTTGTATCCTGGGACCAAGACTTGGCAAAACCTTTGCCGTCTCTTCAAATTCAATCGCTTGGGCTGATAGTAGACAGGCCTTTAAAGTTCAAACATTTGAATCTTCGGAAGGGGCTGAATCTAAAGAGGCGACACCAAGACTTTTTGATCAGATTTAGAGAAATTCCAGATGTGTGCCCTTACAGTACCGCTGCCTTGGAAATGCCAAAAGAGTCAATTGAGGCAGAGAAAAGAGCTTGTTTGGTGGTGAGAGAAATATTAGGCATGATGGTTGAAAAGAGAACATTAGTAGACCACCTGACACATTTTAGAAAAGAGTTTGGTCTGCCCAACAAGTTGAGAGGGATGATTGTGAGGCACCCTGAGTTATTCTATGTGAGCTTGAAAGGGCAGAGGGATTCTGTCCTCTTGGTGGAGGGCTATGATGAGAATGGTTCCCTTTTAGACAAGAAGAAAGAAACTTTGGTGATAAAGGAAAAGTTGATGGAGTTGGTCAGGGAAAGCAAGAGGTTGAGAAGAGGGTGGAGGAAAGCTCACCGTAATAACACTAGGATTGATGTCTGTAATGGTGATAACAGTGACGATGATGATGATGATGATGATTATGATGATGGCTTCCAGGAGTTGTTCAAGTCTGACGATCTGGATTTGGATGACCTTGGTGGTGAGAAGATTGAGACATTAAACTACAGGGAGAATGGTCATTTTTGGACTGCAGATGATCTTAAAGGCAGAGATGGGCAACTCTTGGATCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

480

Amino Acids

55.07

Weight (kDa)

9.24

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 57 - 395 1.8e-94 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1035
AccB7I CCANNNNNTGG 1 cut(s) 700
AccI GTMKAC 2 cut(s) 750, 969
AciI CCGC 2 cut(s) 449, 867
AclWI GGATC 4 cut(s) 291, 334, 1424, 1437
AcsI RAATTY 3 cut(s) 638, 726, 840
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 1 cut(s) 865
AfiI CCNNNNNNNGG 4 cut(s) 448, 587, 700, 1090
AjnI CCWGG 2 cut(s) 686, 1296
AjuI GAANNNNNNNTTGG 2 cut(s) 1124, 1156
AluBI AGCT 5 cut(s) 446, 679, 914, 1059, 1211
AluI AGCT 5 cut(s) 446, 679, 914, 1059, 1211
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 4 cut(s) 615, 620, 723, 1349
Alw44I GTGCAC 1 cut(s) 669
AlwI GGATC 4 cut(s) 291, 334, 1424, 1437
AoxI GGCC 1 cut(s) 755
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 4 cut(s) 446, 452, 461, 869
ApoI RAATTY 3 cut(s) 638, 726, 840
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspS9I GGNCC 3 cut(s) 324, 578, 691
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 7 cut(s) 563, 587, 937, 1156, 1205, 1259, 1355
AvaII GGWCC 3 cut(s) 324, 578, 691
BaeGI GKGCMC 2 cut(s) 673, 857
BamHI GGATCC 1 cut(s) 1429
BanI GGYRCC 1 cut(s) 1035
BbsI GAAGAC 2 cut(s) 361, 584
Bbv12I GWGCWC 1 cut(s) 673
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 4 cut(s) 433, 439, 448, 856
BccI CCATC 8 cut(s) 335, 351, 497, 636, 940, 1156, 1283, 1409
BceAI ACGGC 1 cut(s) 700
BciT130I CCWGG 2 cut(s) 688, 1298
BciVI GTATCC 1 cut(s) 694
BclI TGATCA 1 cut(s) 825
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 4 cut(s) 615, 620, 723, 1349
BfaI CTAG 3 cut(s) 185, 551, 1227
BfmI CTRYAG 4 cut(s) 381, 648, 1366, 1392
BfuI GTATCC 1 cut(s) 694
BisI GCNGC 5 cut(s) 447, 450, 453, 462, 870
BlsI GCNGC 5 cut(s) 448, 451, 454, 463, 871
Bme1390I CCNGG 3 cut(s) 322, 688, 1298
Bme18I GGWCC 3 cut(s) 324, 578, 691
BmgT120I GGNCC 3 cut(s) 324, 578, 691
BmiI GGNNCC 4 cut(s) 692, 1037, 1114, 1431
BmrFI CCNGG 3 cut(s) 322, 688, 1298
BmsI GCATC 1 cut(s) 413
BpiI GAAGAC 2 cut(s) 361, 584
BplI GAGNNNNNCTC 2 cut(s) 1195, 1227
BpmI CTGGAG 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 615
BsaJI CCNNGG 8 cut(s) 71, 320, 501, 574, 687, 873, 1336, 1433
Bsc4I CCNNNNNNNGG 4 cut(s) 448, 587, 700, 1090
Bse3DI GCAATG 2 cut(s) 42, 628
BseBI CCWGG 2 cut(s) 688, 1298
BseDI CCNNGG 8 cut(s) 71, 320, 501, 574, 687, 873, 1336, 1433
BseGI GGATG 4 cut(s) 327, 628, 1029, 1336
BseLI CCNNNNNNNGG 4 cut(s) 448, 587, 700, 1090
BseMI GCAATG 2 cut(s) 42, 628
BseMII CTCAG 2 cut(s) 456, 1032
BseSI GKGCMC 2 cut(s) 673, 857
BseXI GCAGC 4 cut(s) 433, 439, 448, 856
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 1 cut(s) 757
BshNI GGYRCC 1 cut(s) 1035
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 4 cut(s) 448, 587, 700, 1090
BsmAI GTCTC 4 cut(s) 615, 620, 723, 1349
BsmBI CGTCTC 2 cut(s) 620, 723
BsmFI GGGAC 1 cut(s) 704
BsnI GGCC 1 cut(s) 757
Bso31I GGTCTC 1 cut(s) 615
Bsp1286I GDGCHC 2 cut(s) 673, 857
Bsp143I GATC 8 cut(s) 296, 339, 482, 583, 825, 1318, 1399, 1429
BspACI CCGC 2 cut(s) 449, 867
BspANI GGCC 1 cut(s) 757
BspCNI CTCAG 2 cut(s) 457, 1033
BspLI GGNNCC 4 cut(s) 692, 1037, 1114, 1431
BspMAI CTGCAG 1 cut(s) 1396
BspPI GGATC 4 cut(s) 291, 334, 1424, 1437
BspT107I GGYRCC 1 cut(s) 1035
BspTNI GGTCTC 1 cut(s) 615
BsrDI GCAATG 2 cut(s) 42, 628
BssECI CCNNGG 8 cut(s) 71, 320, 501, 574, 687, 873, 1336, 1433
BssMI GATC 8 cut(s) 296, 339, 482, 583, 825, 1318, 1399, 1429
BssT1I CCWWGG 6 cut(s) 71, 501, 574, 873, 1336, 1433
Bst2UI CCWGG 2 cut(s) 688, 1298
Bst4CI ACNGT 4 cut(s) 169, 863, 1217, 1256
Bst6I CTCTTC 2 cut(s) 726, 1189
BstDEI CTNAG 4 cut(s) 408, 465, 479, 1041
BstF5I GGATG 4 cut(s) 327, 628, 1029, 1336
BstKTI GATC 8 cut(s) 299, 342, 485, 586, 828, 1321, 1402, 1432
BstMAI GTCTC 4 cut(s) 615, 620, 723, 1349
BstMBI GATC 8 cut(s) 296, 339, 482, 583, 825, 1318, 1399, 1429
BstMWI GCNNNNNNNGC 3 cut(s) 452, 458, 461
BstNI CCWGG 2 cut(s) 688, 1298
BstSCI CCNGG 3 cut(s) 320, 686, 1296
BstSFI CTRYAG 4 cut(s) 381, 648, 1366, 1392
BstSLI GKGCMC 2 cut(s) 673, 857
BstV1I GCAGC 4 cut(s) 433, 439, 448, 856
BstV2I GAAGAC 2 cut(s) 361, 584
BstX2I RGATCY 1 cut(s) 1429
BstYI RGATCY 1 cut(s) 1429
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 1 cut(s) 757
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 4 cut(s) 327, 628, 1029, 1336
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 2 cut(s) 239, 1261
Cfr13I GGNCC 3 cut(s) 324, 578, 691
Csp6I GTAC 1 cut(s) 864
CviAII CATG 1 cut(s) 943
CviQI GTAC 1 cut(s) 864
DdeI CTNAG 4 cut(s) 408, 465, 479, 1041
DpnI GATC 8 cut(s) 298, 341, 484, 585, 827, 1320, 1401, 1431
DpnII GATC 8 cut(s) 296, 339, 482, 583, 825, 1318, 1399, 1429
DraI TTTAAA 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 726, 1189
EarI CTCTTC 2 cut(s) 726, 1189
Eco130I CCWWGG 6 cut(s) 71, 501, 574, 873, 1336, 1433
Eco147I AGGCCT 1 cut(s) 757
Eco31I GGTCTC 1 cut(s) 615
Eco47I GGWCC 3 cut(s) 324, 578, 691
Eco57I CTGAAG 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 686, 1296
EcoT14I CCWWGG 6 cut(s) 71, 501, 574, 873, 1336, 1433
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 6 cut(s) 71, 501, 574, 873, 1336, 1433
Esp3I CGTCTC 2 cut(s) 620, 723
FaeI CATG 1 cut(s) 946
FaqI GGGAC 1 cut(s) 704
FatI CATG 1 cut(s) 942
FbaI TGATCA 1 cut(s) 825
FblI GTMKAC 2 cut(s) 750, 969
Fnu4HI GCNGC 5 cut(s) 447, 450, 453, 462, 870
FokI GGATG 4 cut(s) 314, 615, 1036, 1343
Fsp4HI GCNGC 5 cut(s) 447, 450, 453, 462, 870
FspBI CTAG 3 cut(s) 185, 551, 1227
GluI GCNGC 5 cut(s) 447, 450, 453, 462, 870
GsaI CCCAGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 500
HaeIII GGCC 1 cut(s) 757
HapII CCGG 1 cut(s) 322
Hin1II CATG 1 cut(s) 946
HinfI GANTC 9 cut(s) 76, 214, 280, 470, 497, 778, 796, 890, 1076
HpaII CCGG 1 cut(s) 322
HphI GGTGA 7 cut(s) 563, 587, 937, 1156, 1205, 1259, 1355
Hpy166II GTNNAC 4 cut(s) 571, 671, 751, 970
Hpy188I TCNGA 6 cut(s) 61, 279, 496, 786, 830, 1315
Hpy188III TCNNGA 6 cut(s) 517, 581, 632, 643, 845, 1322
Hpy8I GTNNAC 4 cut(s) 571, 671, 751, 970
HpyAV CCTTC 3 cut(s) 77, 189, 781
HpyCH4III ACNGT 4 cut(s) 169, 863, 1217, 1256
HpyCH4V TGCA 4 cut(s) 404, 621, 671, 1394
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 458, 461
HpyF3I CTNAG 4 cut(s) 408, 465, 479, 1041
Hsp92II CATG 1 cut(s) 946
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 8 cut(s) 296, 339, 482, 583, 825, 1318, 1399, 1429
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 4 cut(s) 433, 439, 448, 856
LweI GCATC 1 cut(s) 413
MaeI CTAG 3 cut(s) 185, 551, 1227
MaeIII GTNAC 2 cut(s) 347, 1256
MalI GATC 8 cut(s) 298, 341, 484, 585, 827, 1320, 1401, 1431
MboI GATC 8 cut(s) 296, 339, 482, 583, 825, 1318, 1399, 1429
MboII GAAGA 8 cut(s) 361, 528, 584, 713, 773, 1141, 1206, 1360
MfeI CAATTG 1 cut(s) 894
MflI RGATCY 1 cut(s) 1429
MhlI GDGCHC 2 cut(s) 673, 857
MluCI AATT 6 cut(s) 144, 375, 638, 726, 840, 894
MlyI GAGTC 1 cut(s) 899
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 5 cut(s) 162, 285, 761, 1361, 1404
MspA1I CMGCKG 2 cut(s) 446, 869
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 3 cut(s) 322, 688, 1298
MunI CAATTG 1 cut(s) 894
MvaI CCWGG 2 cut(s) 688, 1298
MwoI GCNNNNNNNGC 3 cut(s) 452, 458, 461
NciI CCSGG 1 cut(s) 322
NdeII GATC 8 cut(s) 296, 339, 482, 583, 825, 1318, 1399, 1429
NlaIII CATG 1 cut(s) 946
NlaIV GGNNCC 4 cut(s) 692, 1037, 1114, 1431
NmuCI GTSAC 1 cut(s) 1256
NsiI ATGCAT 1 cut(s) 406
PceI AGGCCT 1 cut(s) 757
PfeI GAWTC 8 cut(s) 76, 214, 280, 470, 497, 778, 796, 1076
PflMI CCANNNNNTGG 1 cut(s) 700
PfoI TCCNGGA 1 cut(s) 1296
PkrI GCNGC 5 cut(s) 448, 451, 454, 463, 871
PleI GAGTC 1 cut(s) 898
PpsI GAGTC 1 cut(s) 898
Psp6I CCWGG 2 cut(s) 686, 1296
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 2 cut(s) 686, 1296
PspN4I GGNNCC 4 cut(s) 692, 1037, 1114, 1431
PspPI GGNCC 3 cut(s) 324, 578, 691
PstI CTGCAG 1 cut(s) 1396
PsuI RGATCY 1 cut(s) 1429
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 865
RsaNI GTAC 1 cut(s) 864
SaqAI TTAA 5 cut(s) 162, 285, 761, 1361, 1404
SatI GCNGC 5 cut(s) 447, 450, 453, 462, 870
Sau3AI GATC 8 cut(s) 296, 339, 482, 583, 825, 1318, 1399, 1429
Sau96I GGNCC 3 cut(s) 324, 578, 691
SchI GAGTC 1 cut(s) 899
ScrFI CCNGG 3 cut(s) 322, 688, 1298
SduI GDGCHC 2 cut(s) 673, 857
SfaNI GCATC 1 cut(s) 413
SfcI CTRYAG 4 cut(s) 381, 648, 1366, 1392
SinI GGWCC 3 cut(s) 324, 578, 691
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 6 cut(s) 144, 375, 638, 726, 840, 894
SseBI AGGCCT 1 cut(s) 757
SsiI CCGC 2 cut(s) 449, 867
SspI AATATT 1 cut(s) 936
SspMI CTAG 3 cut(s) 185, 551, 1227
StuI AGGCCT 1 cut(s) 757
StyD4I CCNGG 3 cut(s) 320, 686, 1296
StyI CCWWGG 6 cut(s) 71, 501, 574, 873, 1336, 1433
TaaI ACNGT 4 cut(s) 169, 863, 1217, 1256
TaqI TCGA 2 cut(s) 295, 335
TaqII GACCGA 1 cut(s) 597
TasI AATT 6 cut(s) 144, 375, 638, 726, 840, 894
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 8 cut(s) 76, 214, 280, 470, 497, 778, 796, 1076
Tru1I TTAA 5 cut(s) 162, 285, 761, 1361, 1404
Tru9I TTAA 5 cut(s) 162, 285, 761, 1361, 1404
TscAI CASTG 2 cut(s) 246, 1261
TseFI GTSAC 1 cut(s) 1256
TseI GCWGC 4 cut(s) 446, 452, 461, 869
Tsp45I GTSAC 1 cut(s) 1256
TspGWI ACGGA 3 cut(s) 44, 161, 422
TspRI CASTG 2 cut(s) 246, 1261
Van91I CCANNNNNTGG 1 cut(s) 700
VneI GTGCAC 1 cut(s) 669
VpaK11BI GGWCC 3 cut(s) 324, 578, 691
XapI RAATTY 3 cut(s) 638, 726, 840
XmiI GTMKAC 2 cut(s) 750, 969
XspI CTAG 3 cut(s) 185, 551, 1227
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.