Rw4G013520

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0014357
Physical Location & Seq
Reverse (-)
31564039 .. 31565422
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G013520.1

Sequence Viewer

Length: 1305 bp
ATGGGGGCGTTGTCGTTGCCTTTCTCATCGCAAAACTTTTTATCCATTACTTCTGTCAGTTCTGACTTCTTTCCTTGGAATCCTCGCTTATTTGAAGTCAGCAGAAATCATAAGAACAACAGCAAAACCAAAAGTATCTCTTTTCCAATTTCTTGCTCATCTGTCAAAACTGTGCGTAGTCCTTCACTAGACAGGCATGTTGTGAAACAGAACAAGATACGGTTTATGCTATATTCCGCTTCAATGATCCATCGTTACCCTACCATTTTTGAAGTCTTCTCAATTCCAACAGCACCCATGCCATTCAATGCATCCAAGTCATTATCACAACCCTGTGTCCGTCTAACCCCAGCTGCAGCAGCGCTTGCTGCTCAGGAATCAACTCTAAAATCAGCCAACTCTGACTCCTTGGCTACCAAACTCCAGAAACTTCTTATGCTTTCTTCTCATCACCGGCTAGTTCTGTCAAAGTTGGTTCACCTCGGTCCAGATCTTGGTCTTCACCCTAATTTTCGGTCTCGTCTCTGCAATGACCATCCAGAAAAATTCAAGACTATTGATACCTCCTACGGCCGTGCACTTGAGCTTGTATCCTGGGACCAAGACCTGGCAAAACCTTTACCGCCTCCACAAGTTCAATCGCGTGGGCTGATAGTAGACAGGCCTTTGAAGTTCAAGCATTTGAATCTTCGGAAGGGTCTGAATCTGAAGAGGCGACACCAAGAATTTTTGATGAGATTTAGAGAAATTCCAGATTCAATTGAGGCAGAGAAAAGAGCTTGTTTGGTGGTGAGAGAAATGCTAGGGATGATGGTTGAAAAGAGAACATTAATAGACCACTTGACACATTTTAGAAAAGAGTTTGGTCTGCCCAACAAGTTGAGAGGGATGATTGTGAGGCACCCTGAGTTATTCTATGTGAGCTTGAAAGGGCAGAGGGATTCTGTATTCCTGGTGGAGGGCTATGATGAGAATGGTTCGCTTTTAGACAAGAAGAAAGAAACTTTGGTGATAAAGGAAAAGTTGATGGAGTTGGTCAGGGAAAGCAAGAGGTTGAGAAAAGAGAGGAGGAAAGTTCGCCTTAATAACACTAGGATTGATGACTGTAATGGTGATAATAGTGATGATGAAGATGATGATGATTATTATTATGATGATGGCTTCCTGGATTTGTTTGAGTCTGAGGATCTGTATTTGGATGATAAAAGTGAGACACTAAATTACAGGCAGAATGGTGAGTTTTGGACTGCGGATGCTTATTCTGATGTTGAAGGAAGAGATGGGCAACATTTGGAGCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

434

Amino Acids

50.13

Weight (kDa)

8.96

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 67 - 350 5.1e-72 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 900
AccB7I CCANNNNNTGG 2 cut(s) 494, 607
AccI GTMKAC 1 cut(s) 657
AccII CGCG 1 cut(s) 643
AciI CCGC 3 cut(s) 237, 623, 1250
AclWI GGATC 2 cut(s) 241, 1194
AcoI YGGCCR 1 cut(s) 571
AcsI RAATTY 3 cut(s) 545, 725, 747
AcuI CTGAAG 1 cut(s) 728
AfeI AGCGCT 1 cut(s) 363
AfiI CCNNNNNNNGG 3 cut(s) 494, 607, 958
AjnI CCWGG 4 cut(s) 593, 606, 951, 1164
AjuI GAANNNNNNNTTGG 2 cut(s) 989, 1021
AluBI AGCT 4 cut(s) 353, 586, 779, 924
AluI AGCT 4 cut(s) 353, 586, 779, 924
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 3 cut(s) 522, 527, 1205
Alw44I GTGCAC 1 cut(s) 576
AlwI GGATC 2 cut(s) 241, 1194
Aor51HI AGCGCT 1 cut(s) 363
AoxI GGCC 2 cut(s) 571, 662
ApaLI GTGCAC 1 cut(s) 576
ApeKI GCWGC 4 cut(s) 353, 356, 359, 368
ApoI RAATTY 3 cut(s) 545, 725, 747
AseI ATTAAT 1 cut(s) 830
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 485, 598
AsuHPI GGTGA 7 cut(s) 443, 470, 494, 802, 1021, 1124, 1247
AvaII GGWCC 2 cut(s) 485, 598
BaeGI GKGCMC 1 cut(s) 580
BanI GGYRCC 1 cut(s) 900
BbsI GAAGAC 2 cut(s) 268, 491
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 4 cut(s) 340, 355, 368, 371
BccI CCATC 6 cut(s) 258, 543, 805, 1021, 1151, 1274
BceAI ACGGC 2 cut(s) 558, 586
BciT130I CCWGG 4 cut(s) 595, 608, 953, 1166
BciVI GTATCC 1 cut(s) 601
BcoDI GTCTC 3 cut(s) 522, 527, 1205
BfaI CTAG 4 cut(s) 188, 458, 803, 1092
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 365
BfuI GTATCC 1 cut(s) 601
BglII AGATCT 1 cut(s) 490
BisI GCNGC 4 cut(s) 354, 357, 360, 369
BlsI GCNGC 4 cut(s) 355, 358, 361, 370
Bme1390I CCNGG 4 cut(s) 595, 608, 953, 1166
Bme18I GGWCC 2 cut(s) 485, 598
BmgT120I GGNCC 2 cut(s) 485, 598
BmiI GGNNCC 3 cut(s) 599, 902, 1296
BmrFI CCNGG 4 cut(s) 595, 608, 953, 1166
BmsI GCATC 2 cut(s) 320, 1243
BpiI GAAGAC 2 cut(s) 268, 491
BpmI CTGGAG 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 602
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 5 cut(s) 74, 408, 481, 594, 1298
BsaXI ACNNNNNCTCC 3 cut(s) 389, 419, 1286
Bsc4I CCNNNNNNNGG 3 cut(s) 494, 607, 958
Bse118I RCCGGY 1 cut(s) 453
Bse3DI GCAATG 1 cut(s) 535
BseBI CCWGG 4 cut(s) 595, 608, 953, 1166
BseDI CCNNGG 5 cut(s) 74, 408, 481, 594, 1298
BseGI GGATG 6 cut(s) 311, 535, 813, 894, 1204, 1258
BseLI CCNNNNNNNGG 3 cut(s) 494, 607, 958
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 3 cut(s) 386, 897, 1173
BseRI GAGGAG 1 cut(s) 1081
BseSI GKGCMC 1 cut(s) 580
BseX3I CGGCCG 1 cut(s) 571
BseXI GCAGC 4 cut(s) 340, 355, 368, 371
BseYI CCCAGC 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 643
Bsh1285I CGRYCG 1 cut(s) 574
BshFI GGCC 2 cut(s) 573, 664
BshNI GGYRCC 1 cut(s) 900
BsiEI CGRYCG 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 1 cut(s) 454
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 3 cut(s) 494, 607, 958
BsmAI GTCTC 3 cut(s) 522, 527, 1205
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 611
BsnI GGCC 2 cut(s) 573, 664
Bso31I GGTCTC 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 3 cut(s) 246, 490, 1186
BspACI CCGC 3 cut(s) 237, 623, 1250
BspANI GGCC 2 cut(s) 573, 664
BspCNI CTCAG 3 cut(s) 385, 898, 1174
BspFNI CGCG 1 cut(s) 643
BspLI GGNNCC 3 cut(s) 599, 902, 1296
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 2 cut(s) 241, 1194
BspT107I GGYRCC 1 cut(s) 900
BspTNI GGTCTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 5 cut(s) 74, 408, 481, 594, 1298
BssMI GATC 3 cut(s) 246, 490, 1186
BssT1I CCWWGG 3 cut(s) 74, 408, 1298
Bst2UI CCWGG 4 cut(s) 595, 608, 953, 1166
Bst4CI ACNGT 3 cut(s) 172, 222, 1106
Bst6I CTCTTC 2 cut(s) 704, 1270
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 3 cut(s) 372, 906, 1182
BstENI CCTNNNNNAGG 1 cut(s) 956
BstF5I GGATG 6 cut(s) 311, 535, 813, 894, 1204, 1258
BstFNI CGCG 1 cut(s) 643
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 3 cut(s) 249, 493, 1189
BstMAI GTCTC 3 cut(s) 522, 527, 1205
BstMBI GATC 3 cut(s) 246, 490, 1186
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 3 cut(s) 359, 365, 368
BstNI CCWGG 4 cut(s) 595, 608, 953, 1166
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 4 cut(s) 593, 606, 951, 1164
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 1 cut(s) 643
BstV1I GCAGC 4 cut(s) 340, 355, 368, 371
BstV2I GAAGAC 2 cut(s) 268, 491
BstX2I RGATCY 2 cut(s) 490, 1186
BstYI RGATCY 2 cut(s) 490, 1186
BstZI CGGCCG 1 cut(s) 571
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 2 cut(s) 573, 664
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 6 cut(s) 311, 535, 813, 894, 1204, 1258
Cac8I GCNNGC 1 cut(s) 366
CfoI GCGC 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 2 cut(s) 485, 598
CviAII CATG 2 cut(s) 197, 298
DdeI CTNAG 3 cut(s) 372, 906, 1182
DpnI GATC 3 cut(s) 248, 492, 1188
DpnII GATC 3 cut(s) 246, 490, 1186
EaeI YGGCCR 1 cut(s) 571
EagI CGGCCG 1 cut(s) 571
Eam1104I CTCTTC 2 cut(s) 704, 1270
EarI CTCTTC 2 cut(s) 704, 1270
EclXI CGGCCG 1 cut(s) 571
Eco130I CCWWGG 3 cut(s) 74, 408, 1298
Eco147I AGGCCT 1 cut(s) 664
Eco31I GGTCTC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 485, 598
Eco47III AGCGCT 1 cut(s) 363
Eco52I CGGCCG 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 728
EcoNI CCTNNNNNAGG 1 cut(s) 956
EcoRII CCWGG 4 cut(s) 593, 606, 951, 1164
EcoT14I CCWWGG 3 cut(s) 74, 408, 1298
EcoT22I ATGCAT 1 cut(s) 313
ErhI CCWWGG 3 cut(s) 74, 408, 1298
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 2 cut(s) 200, 301
FaiI YATR 9 cut(s) 111, 198, 227, 232, 299, 437, 918, 966, 1152
FalI AAGNNNNNCTT 4 cut(s) 124, 156, 1065, 1097
FaqI GGGAC 1 cut(s) 611
FatI CATG 2 cut(s) 196, 297
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 4 cut(s) 354, 357, 360, 369
FokI GGATG 6 cut(s) 298, 522, 820, 901, 1211, 1265
Fsp4HI GCNGC 4 cut(s) 354, 357, 360, 369
FspBI CTAG 4 cut(s) 188, 458, 803, 1092
GlaI GCGC 1 cut(s) 363
GluI GCNGC 4 cut(s) 354, 357, 360, 369
GsaI CCCAGC 1 cut(s) 353
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 2 cut(s) 573, 664
HapII CCGG 1 cut(s) 454
HhaI GCGC 1 cut(s) 364
Hin1II CATG 2 cut(s) 200, 301
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HinfI GANTC 8 cut(s) 79, 377, 404, 685, 703, 755, 941, 1178
HpaII CCGG 1 cut(s) 454
HphI GGTGA 7 cut(s) 443, 470, 494, 802, 1021, 1124, 1247
Hpy166II GTNNAC 3 cut(s) 478, 578, 658
Hpy188I TCNGA 7 cut(s) 64, 403, 693, 702, 708, 1183, 1264
Hpy188III TCNNGA 6 cut(s) 374, 424, 488, 539, 550, 752
Hpy8I GTNNAC 3 cut(s) 478, 578, 658
HpyAV CCTTC 3 cut(s) 192, 688, 1265
HpyCH4III ACNGT 3 cut(s) 172, 222, 1106
HpyCH4V TGCA 4 cut(s) 311, 356, 528, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 359, 365, 368
HpyF3I CTNAG 3 cut(s) 372, 906, 1182
Hsp92II CATG 2 cut(s) 200, 301
HspAI GCGC 1 cut(s) 362
Kzo9I GATC 3 cut(s) 246, 490, 1186
LmnI GCTCC 1 cut(s) 1294
Lsp1109I GCAGC 4 cut(s) 340, 355, 368, 371
LweI GCATC 2 cut(s) 320, 1243
MaeI CTAG 4 cut(s) 188, 458, 803, 1092
MaeIII GTNAC 1 cut(s) 254
MalI GATC 3 cut(s) 248, 492, 1188
MboI GATC 3 cut(s) 246, 490, 1186
MboII GAAGA 8 cut(s) 268, 435, 491, 680, 721, 1006, 1142, 1287
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 2 cut(s) 490, 1186
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 8 cut(s) 147, 282, 508, 545, 725, 747, 759, 1219
MlyI GAGTC 2 cut(s) 398, 1187
MmeI TCCRAC 1 cut(s) 311
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 2 cut(s) 830, 1083
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 4 cut(s) 595, 608, 953, 1166
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 4 cut(s) 595, 608, 953, 1166
MvnI CGCG 1 cut(s) 643
MwoI GCNNNNNNNGC 3 cut(s) 359, 365, 368
NdeII GATC 3 cut(s) 246, 490, 1186
NlaIII CATG 2 cut(s) 200, 301
NlaIV GGNNCC 3 cut(s) 599, 902, 1296
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 1 cut(s) 200
PceI AGGCCT 1 cut(s) 664
PfeI GAWTC 6 cut(s) 79, 377, 685, 703, 755, 941
PflMI CCANNNNNTGG 2 cut(s) 494, 607
PfoI TCCNGGA 1 cut(s) 1164
PkrI GCNGC 4 cut(s) 355, 358, 361, 370
PleI GAGTC 2 cut(s) 398, 1186
PpsI GAGTC 2 cut(s) 398, 1186
PshBI ATTAAT 1 cut(s) 830
Psp6I CCWGG 4 cut(s) 593, 606, 951, 1164
PspFI CCCAGC 1 cut(s) 349
PspGI CCWGG 4 cut(s) 593, 606, 951, 1164
PspN4I GGNNCC 3 cut(s) 599, 902, 1296
PspPI GGNCC 2 cut(s) 485, 598
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 490, 1186
PvuII CAGCTG 1 cut(s) 353
SaqAI TTAA 2 cut(s) 830, 1083
SatI GCNGC 4 cut(s) 354, 357, 360, 369
Sau3AI GATC 3 cut(s) 246, 490, 1186
Sau96I GGNCC 2 cut(s) 485, 598
SchI GAGTC 2 cut(s) 398, 1187
ScrFI CCNGG 4 cut(s) 595, 608, 953, 1166
SduI GDGCHC 1 cut(s) 580
SetI ASST 9 cut(s) 355, 483, 566, 588, 609, 619, 781, 926, 1055
SfaNI GCATC 2 cut(s) 320, 1243
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 2 cut(s) 485, 598
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 8 cut(s) 147, 282, 508, 545, 725, 747, 759, 1219
SseBI AGGCCT 1 cut(s) 664
SsiI CCGC 3 cut(s) 237, 623, 1250
SspMI CTAG 4 cut(s) 188, 458, 803, 1092
StuI AGGCCT 1 cut(s) 664
StyD4I CCNGG 4 cut(s) 593, 606, 951, 1164
StyI CCWWGG 3 cut(s) 74, 408, 1298
TaaI ACNGT 3 cut(s) 172, 222, 1106
TaqII GACCGA 2 cut(s) 473, 504
TasI AATT 8 cut(s) 147, 282, 508, 545, 725, 747, 759, 1219
TfiI GAWTC 6 cut(s) 79, 377, 685, 703, 755, 941
Tru1I TTAA 2 cut(s) 830, 1083
Tru9I TTAA 2 cut(s) 830, 1083
TseI GCWGC 4 cut(s) 353, 356, 359, 368
TspDTI ATGAA 1 cut(s) 1143
TspGWI ACGGA 1 cut(s) 329
Van91I CCANNNNNTGG 2 cut(s) 494, 607
VneI GTGCAC 1 cut(s) 576
VpaK11BI GGWCC 2 cut(s) 485, 598
VspI ATTAAT 1 cut(s) 830
XagI CCTNNNNNAGG 1 cut(s) 956
XapI RAATTY 3 cut(s) 545, 725, 747
XceI RCATGY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 4 cut(s) 188, 458, 803, 1092
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.