MD04G1026700.v1.1

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014357
Physical Location & Seq
Forward (+)
3092964 .. 3099875
6912 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1026700.v1.1.491

Sequence Viewer

Length: 1449 bp
ATGGAGTTGTCTTCGCCCTTCTCATTGCAAAGGGATTTACCCATCACTTCTCTCAGATCCAGCTTCCTCCCTTGGAATCCTCCTTGCTTATTAGGTACAGTCAAGAGGAATTATAAAAACAATAGGATCTCAGAAAATATCCCTTTTTCAGTATCTTGCTCATCTGTCAAAACTGTCCGCAGTCCTTCATTGGACAAGCATGTTGTGAAGCAAAACAAGATGCGTTTTGTCCAAAAGCTACAAACACTGCTTCTTTCCAAACCGAAATGCTATATTCCAATTCATATTCTCAATAAGTGTCGAGCCTACCTTTCCCTATCAAAGCCACGATCCATTCTCTCAATGATTCATAGATACCCTACTATTTTTGAACTCTTCATGATCCCAATAGCTCCCTTGCCATCCAATGCAACTAAATCATTATCACAACTCTGTGTCCGTCTAACCCCAGCTGCAGCAGCCCTTGCTGCTGAGGAATTAAGTCTCAAATCAGCCATCTCTGACACCTTGGCCACCAAACTCCAGAAACTTCTTATGCTCTCTTCTCATCATCGACTACTTCTGTCAAAGTTGGTTCACCTAGCTCCAGATCTTGGTCTTCCCCCTAATTTTCGCTCTCGTCTATGCAATGACTATCCAAATAAATTCAAGACTGTTGACACCTCCTATGGCCGTGCACTTGAGCTTGTCTCCTGGGACCAAGACTTGGCAAAGCCTTTACCATCTCCAGAAGTTCAGTCACGTGAGCTAATAGTAGACAGACCTTTGAAATTCAAGCAGTTGACACTCCGAAAGGGTCTAAATTTGAAGAGGCGTCACCAAGATTTTTTGCTCAAATTCAAAGAAATTCCGGATGTGTGCCCATACAATACCCCCATCTCGGACTTGCCTAAAGAGACAATTGAGGCAGAGAAGAGAGCTTGTTTGGTGGTGAGAGAAGTGCTAGGGATGACGGTTGAAAAGAGAACTTTGATAGACCACTTGACTCATTTTAGGAATGATTTTGTGCTGTCCAACAAGTTGAGAGGGATGATCATACGGCACCCGGAGTTATTCTATGTGAGCTTGAAAGGGCAGAGAGATTCAGTGTTTTTAGTGGAGGGTTTTGATGACAAGGGTGCACTGTTGGAGAAGAAAGAGACTTTGGTGATAAAGGAAAAGTTGATGCAGTTGGTTAGAGAAAGCAAGAGACTAAGAAGAGAGAGGAAGAAAGCTAGGATTAACAACACTGAGATTGGTGGCTCTAGTGATGATTTTGAGTCCGATGGTGATGATGATGATGACTATGATGACGGTTTTCAGAGTTTGTTTGAGCCTGAAGATTTTTATGTGGATGATGATGGTGATAAGAAGGGTGAGATAATTGACTACAGGGAGAAAGGGCAGTTTTGGAATGTTGATGCTCATTCTGTTCATGATGGCGGGAAGCAACAAATGGAACCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

483

Amino Acids

55.31

Weight (kDa)

9.13

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 59 - 396 2.5e-96 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 1041
AccB7I CCANNNNNTGG 2 cut(s) 593, 706
AccI GTMKAC 1 cut(s) 756
AccIII TCCGGA 1 cut(s) 850
AciI CCGC 2 cut(s) 178, 1422
AclWI GGATC 4 cut(s) 51, 134, 324, 376
AcoI YGGCCR 2 cut(s) 510, 670
AcsI RAATTY 5 cut(s) 644, 770, 802, 836, 846
AcuI CTGAAG 1 cut(s) 1338
AcvI CACGTG 1 cut(s) 743
AcyI GRCGYC 1 cut(s) 814
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 3 cut(s) 593, 706, 880
AgsI TTSAA 8 cut(s) 371, 649, 769, 775, 808, 841, 959, 1069
AjnI CCWGG 1 cut(s) 692
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
Alw21I GWGCWC 2 cut(s) 679, 1123
Alw26I GTCTC 5 cut(s) 488, 694, 890, 1133, 1183
Alw44I GTGCAC 2 cut(s) 675, 1119
AlwI GGATC 4 cut(s) 51, 134, 324, 376
Aor13HI TCCGGA 1 cut(s) 850
AoxI GGCC 2 cut(s) 510, 670
ApaLI GTGCAC 2 cut(s) 675, 1119
ApeKI GCWGC 4 cut(s) 452, 455, 458, 467
ApoI RAATTY 5 cut(s) 644, 770, 802, 836, 846
AspS9I GGNCC 1 cut(s) 697
AsuC2I CCSGG 1 cut(s) 1046
AsuHPI GGTGA 7 cut(s) 569, 809, 943, 1159, 1280, 1355, 1367
AvaII GGWCC 1 cut(s) 697
BaeGI GKGCMC 3 cut(s) 679, 863, 1123
BalI TGGCCA 1 cut(s) 512
BanI GGYRCC 1 cut(s) 1041
BbrPI CACGTG 1 cut(s) 743
BbsI GAAGAC 2 cut(s) 3, 590
Bbv12I GWGCWC 2 cut(s) 679, 1123
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 4 cut(s) 439, 454, 467, 470
BccI CCATC 8 cut(s) 50, 409, 503, 730, 884, 1259, 1334, 1412
BceAI ACGGC 2 cut(s) 657, 1055
BciT130I CCWGG 1 cut(s) 694
BclI TGATCA 1 cut(s) 1032
BcnI CCSGG 1 cut(s) 1046
BcoDI GTCTC 5 cut(s) 488, 694, 890, 1133, 1183
BfaI CTAG 4 cut(s) 581, 944, 1215, 1245
BfmI CTRYAG 2 cut(s) 453, 1369
BglII AGATCT 1 cut(s) 589
BisI GCNGC 4 cut(s) 453, 456, 459, 468
BlsI GCNGC 4 cut(s) 454, 457, 460, 469
Bme1390I CCNGG 2 cut(s) 694, 1046
Bme18I GGWCC 1 cut(s) 697
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 3 cut(s) 698, 1043, 1440
BmrFI CCNGG 2 cut(s) 694, 1046
BmsI GCATC 3 cut(s) 210, 1155, 1390
BpiI GAAGAC 2 cut(s) 3, 590
BplI GAGNNNNNCTC 2 cut(s) 674, 706
BpmI CTGGAG 3 cut(s) 506, 570, 711
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 1046
BsaAI YACGTR 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 814
BsaJI CCNNGG 4 cut(s) 71, 507, 693, 1442
BsaWI WCCGGW 1 cut(s) 850
Bsc4I CCNNNNNNNGG 3 cut(s) 593, 706, 880
Bse3DI GCAATG 2 cut(s) 23, 634
BseAI TCCGGA 1 cut(s) 850
BseBI CCWGG 1 cut(s) 694
BseDI CCNNGG 4 cut(s) 71, 507, 693, 1442
BseGI GGATG 5 cut(s) 401, 859, 954, 1035, 1339
BseLI CCNNNNNNNGG 3 cut(s) 593, 706, 880
BseMI GCAATG 2 cut(s) 23, 634
BseMII CTCAG 4 cut(s) 67, 144, 462, 1221
BseSI GKGCMC 3 cut(s) 679, 863, 1123
BseXI GCAGC 4 cut(s) 439, 454, 467, 470
BseYI CCCAGC 1 cut(s) 448
BshFI GGCC 2 cut(s) 512, 672
BshNI GGYRCC 1 cut(s) 1041
BsiHKAI GWGCWC 2 cut(s) 679, 1123
BsiSI CCGG 2 cut(s) 851, 1046
BslFI GGGAC 1 cut(s) 710
BslI CCNNNNNNNGG 3 cut(s) 593, 706, 880
BsmAI GTCTC 5 cut(s) 488, 694, 890, 1133, 1183
BsmFI GGGAC 1 cut(s) 710
BsnI GGCC 2 cut(s) 512, 672
Bsp1286I GDGCHC 3 cut(s) 679, 863, 1123
Bsp13I TCCGGA 1 cut(s) 850
Bsp143I GATC 6 cut(s) 56, 126, 329, 381, 589, 1032
BspACI CCGC 2 cut(s) 178, 1422
BspANI GGCC 2 cut(s) 512, 672
BspCNI CTCAG 4 cut(s) 66, 143, 463, 1222
BspEI TCCGGA 1 cut(s) 850
BspHI TCATGA 2 cut(s) 378, 1414
BspLI GGNNCC 3 cut(s) 698, 1043, 1440
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 4 cut(s) 51, 134, 324, 376
BspT107I GGYRCC 1 cut(s) 1041
BsrDI GCAATG 2 cut(s) 23, 634
BssECI CCNNGG 4 cut(s) 71, 507, 693, 1442
BssMI GATC 6 cut(s) 56, 126, 329, 381, 589, 1032
BssNI GRCGYC 1 cut(s) 814
BssT1I CCWWGG 3 cut(s) 71, 507, 1442
Bst2UI CCWGG 1 cut(s) 694
Bst4CI ACNGT 6 cut(s) 100, 175, 655, 955, 1125, 1295
Bst6I CTCTTC 5 cut(s) 380, 547, 803, 908, 1192
BstACI GRCGYC 1 cut(s) 814
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 743
BstDEI CTNAG 5 cut(s) 53, 130, 471, 1193, 1230
BstF5I GGATG 5 cut(s) 401, 859, 954, 1035, 1339
BstKTI GATC 6 cut(s) 59, 129, 332, 384, 592, 1035
BstMAI GTCTC 5 cut(s) 488, 694, 890, 1133, 1183
BstMBI GATC 6 cut(s) 56, 126, 329, 381, 589, 1032
BstMWI GCNNNNNNNGC 3 cut(s) 458, 464, 467
BstNI CCWGG 1 cut(s) 694
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 692, 1044
BstSFI CTRYAG 2 cut(s) 453, 1369
BstSLI GKGCMC 3 cut(s) 679, 863, 1123
BstV1I GCAGC 4 cut(s) 439, 454, 467, 470
BstV2I GAAGAC 2 cut(s) 3, 590
BstX2I RGATCY 3 cut(s) 56, 126, 589
BstYI RGATCY 3 cut(s) 56, 126, 589
BsuRI GGCC 2 cut(s) 512, 672
BtsCI GGATG 5 cut(s) 401, 859, 954, 1035, 1339
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 4 cut(s) 245, 1092, 1121, 1227
CciI TCATGA 2 cut(s) 378, 1414
Cfr13I GGNCC 1 cut(s) 697
CseI GACGC 1 cut(s) 803
Csp6I GTAC 1 cut(s) 96
CviAII CATG 3 cut(s) 200, 379, 1415
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 5 cut(s) 53, 130, 471, 1193, 1230
DpnI GATC 6 cut(s) 58, 128, 331, 383, 591, 1034
DpnII GATC 6 cut(s) 56, 126, 329, 381, 589, 1032
EaeI YGGCCR 2 cut(s) 510, 670
Eam1104I CTCTTC 5 cut(s) 380, 547, 803, 908, 1192
EarI CTCTTC 5 cut(s) 380, 547, 803, 908, 1192
Eco130I CCWWGG 3 cut(s) 71, 507, 1442
Eco47I GGWCC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 1338
Eco72I CACGTG 1 cut(s) 743
EcoRII CCWGG 1 cut(s) 692
EcoT14I CCWWGG 3 cut(s) 71, 507, 1442
ErhI CCWWGG 3 cut(s) 71, 507, 1442
FaeI CATG 3 cut(s) 203, 382, 1418
FaqI GGGAC 1 cut(s) 710
FatI CATG 3 cut(s) 199, 378, 1414
FauI CCCGC 1 cut(s) 1415
FbaI TGATCA 1 cut(s) 1032
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 4 cut(s) 453, 456, 459, 468
FokI GGATG 5 cut(s) 388, 866, 961, 1042, 1346
Fsp4HI GCNGC 4 cut(s) 453, 456, 459, 468
FspBI CTAG 4 cut(s) 581, 944, 1215, 1245
GluI GCNGC 4 cut(s) 453, 456, 459, 468
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 3 cut(s) 506, 570, 711
HaeIII GGCC 2 cut(s) 512, 672
HapII CCGG 2 cut(s) 851, 1046
HgaI GACGC 1 cut(s) 803
Hin1I GRCGYC 1 cut(s) 814
Hin1II CATG 3 cut(s) 203, 382, 1418
HincII GTYRAC 2 cut(s) 658, 783
HindII GTYRAC 2 cut(s) 658, 783
HinfI GANTC 5 cut(s) 76, 346, 985, 1082, 1259
HpaII CCGG 2 cut(s) 851, 1046
HphI GGTGA 7 cut(s) 569, 809, 943, 1159, 1280, 1355, 1367
Hpy166II GTNNAC 6 cut(s) 577, 658, 677, 757, 783, 1121
Hpy188I TCNGA 7 cut(s) 56, 133, 502, 791, 883, 1264, 1302
Hpy188III TCNNGA 8 cut(s) 103, 379, 523, 587, 649, 728, 851, 1415
Hpy8I GTNNAC 6 cut(s) 577, 658, 677, 757, 783, 1121
HpyAV CCTTC 3 cut(s) 28, 195, 1345
HpyCH4III ACNGT 6 cut(s) 100, 175, 655, 955, 1125, 1295
HpyCH4IV ACGT 1 cut(s) 742
HpyCH4V TGCA 7 cut(s) 28, 410, 455, 627, 677, 1121, 1168
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 464, 467
HpyF3I CTNAG 5 cut(s) 53, 130, 471, 1193, 1230
HpySE526I ACGT 1 cut(s) 742
Hsp92I GRCGYC 1 cut(s) 814
Hsp92II CATG 3 cut(s) 203, 382, 1418
Kpn2I TCCGGA 1 cut(s) 850
Ksp22I TGATCA 1 cut(s) 1032
Kzo9I GATC 6 cut(s) 56, 126, 329, 381, 589, 1032
LmnI GCTCC 2 cut(s) 397, 589
Lsp1109I GCAGC 4 cut(s) 439, 454, 467, 470
LweI GCATC 3 cut(s) 210, 1155, 1390
MaeI CTAG 4 cut(s) 581, 944, 1215, 1245
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 2 cut(s) 738, 815
MalI GATC 6 cut(s) 58, 128, 331, 383, 591, 1034
MboI GATC 6 cut(s) 56, 126, 329, 381, 589, 1032
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 3 cut(s) 56, 126, 589
MhlI GDGCHC 3 cut(s) 679, 863, 1123
MlsI TGGCCA 1 cut(s) 512
MluNI TGGCCA 1 cut(s) 512
MlyI GAGTC 2 cut(s) 979, 1268
MmeI TCCRAC 2 cut(s) 1038, 1107
Mox20I TGGCCA 1 cut(s) 512
MroI TCCGGA 1 cut(s) 850
MscI TGGCCA 1 cut(s) 512
MseI TTAA 2 cut(s) 479, 1221
Msp20I TGGCCA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 2 cut(s) 851, 1046
MspR9I CCNGG 2 cut(s) 694, 1046
MunI CAATTG 1 cut(s) 900
MvaI CCWGG 1 cut(s) 694
MwoI GCNNNNNNNGC 3 cut(s) 458, 464, 467
NciI CCSGG 1 cut(s) 1046
NdeII GATC 6 cut(s) 56, 126, 329, 381, 589, 1032
NlaIII CATG 3 cut(s) 203, 382, 1418
NlaIV GGNNCC 3 cut(s) 698, 1043, 1440
NmuCI GTSAC 2 cut(s) 738, 815
NspI RCATGY 1 cut(s) 203
PagI TCATGA 2 cut(s) 378, 1414
PfeI GAWTC 3 cut(s) 76, 346, 1082
PflMI CCANNNNNTGG 2 cut(s) 593, 706
PkrI GCNGC 4 cut(s) 454, 457, 460, 469
PleI GAGTC 2 cut(s) 979, 1267
PmaCI CACGTG 1 cut(s) 743
PmlI CACGTG 1 cut(s) 743
PpsI GAGTC 2 cut(s) 979, 1267
Ppu21I YACGTR 1 cut(s) 743
PsiI TTATAA 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 692
PspCI CACGTG 1 cut(s) 743
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 692
PspN4I GGNNCC 3 cut(s) 698, 1043, 1440
PspPI GGNCC 1 cut(s) 697
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 3 cut(s) 56, 126, 589
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 479, 1221
SatI GCNGC 4 cut(s) 453, 456, 459, 468
Sau3AI GATC 6 cut(s) 56, 126, 329, 381, 589, 1032
Sau96I GGNCC 1 cut(s) 697
SchI GAGTC 2 cut(s) 979, 1268
ScrFI CCNGG 2 cut(s) 694, 1046
SduI GDGCHC 3 cut(s) 679, 863, 1123
SfaNI GCATC 3 cut(s) 210, 1155, 1390
SfcI CTRYAG 2 cut(s) 453, 1369
SinI GGWCC 1 cut(s) 697
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SsiI CCGC 2 cut(s) 178, 1422
SspMI CTAG 4 cut(s) 581, 944, 1215, 1245
StyD4I CCNGG 2 cut(s) 692, 1044
StyI CCWWGG 3 cut(s) 71, 507, 1442
TaaI ACNGT 6 cut(s) 100, 175, 655, 955, 1125, 1295
TaiI ACGT 1 cut(s) 745
TaqI TCGA 2 cut(s) 301, 553
TfiI GAWTC 3 cut(s) 76, 346, 1082
Tru1I TTAA 2 cut(s) 479, 1221
Tru9I TTAA 2 cut(s) 479, 1221
TscAI CASTG 4 cut(s) 252, 1092, 1128, 1234
TseFI GTSAC 2 cut(s) 738, 815
TseI GCWGC 4 cut(s) 452, 455, 458, 467
Tsp45I GTSAC 2 cut(s) 738, 815
TspDTI ATGAA 5 cut(s) 177, 272, 338, 367, 1403
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 4 cut(s) 252, 1092, 1128, 1234
Van91I CCANNNNNTGG 2 cut(s) 593, 706
VneI GTGCAC 2 cut(s) 675, 1119
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 5 cut(s) 644, 770, 802, 836, 846
XceI RCATGY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 756
XspI CTAG 4 cut(s) 581, 944, 1215, 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.