MD04G1027400.v1.1

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014357
Physical Location & Seq
Forward (+)
3136833 .. 3141359
4527 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1027400.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGGAGTTGTCTTTGCCCTTCTCATTGCAAAGGGATTTTCCCGTCACTTCTCTCAGATCCAGCTTCCTCCCTTGGAATCCTCCTTGCTTATTAGGTACAGTCAAGAGGAATTATAAAAACAATAGGATCTCAGAAAATATCCCTTTTTCAGTTTCTTGCTCATCTGTCAAAACTGTCCGCAGTCCTTCACTAGACAAGCATGTTGTGAAGCAAAACAAGATACGTTTTGTCCAAAAGCTACAAACACTGCTTCTTTCCAAACCGAAGTGCTATATTCCAATTCATATTCTCAATAAGTGTCGAGCCTACCTTTCCCTATCAAAGCCACGATCCATTCTCTCAATGATTCATCGATACCCTACTATTTTTGAACTCTTCTCAATCCCAACAGCTCCCTTGCCATCCAATGCAACTAAATCATTATCACAACTCTGTGTCCGTCTAACCCCAGCTGCGGCAGCCCTTGCTGCTGAGGAATTAAGTCTCAAATCAGCCATCTCTGACTCCTTGGCCACCAAACTCCAGAAACTTCTTATGCTCTCTTCTCATCATCGACTACTTCTGTCAAAGTTGGTTCACCTAGCTCCAGATCTTGGTCTTCCCCCTAATTTTCGCTCTCATCTATGCAATGACTATCCAAATAAATTCAAGACTGTTGACACCTCCTATGGCCGTGCACTTGAGCTTGTCTCCTGGGACCAAGACTTGGCAAAGCCTTTACCATGTCCAGAAGTTCAGTCACGTGAGTTAATAGTAGACAGACCTTTGAAATTCAAGCAGTTGACGCTCCGAAAGGGTCTAAATTTGAAGAGGCGTCACCAAGATTTTTTGCTCAAATTCAAAGAAATTCCGGATGTGTGCCCGTACAATACCCCCATCTCAGACTTGCCTAAAGAGTCAATTGAGGCAGAGAAGAGAGCTTGTTTGGTGGTGAGAGAAGTGCTAGGGATGACGGTTGAAAAGAGAACTTTGATAGACCACTTGACTCATTTTAGGAATGATTTTGTGCTGTCCAACAAGTTGAGAGGGATGATCATACGGCACCCGGAGTTATTCTATGTGAGCTTGAAAGGGCAGAGAGATTCAGTGTTTTTAGTGGAGGGTTTTGATGACAAGGGTGCACTGTTGGAGAAGAAAGAGGCTTTGGTGATAAAGGAAAAGTTGATGCGGTTGGTTAGAGAAAGCAAGAGACTAAGAAGAGAGAGGAAGAAAGCTAGGATTAACAACACTGAGATTGGTGGCTCTAGTGATGACTTTGAGTCCGATGGTGATGATGATGATGACGACTATGATGACGGTTTTCAGAGTTTGTTTGAGCCTGAAGATTTTTATGTGGATGATGATGTTGATAAGAAGGGTGAGATAATTGACTACAGGGAGAAAGGGCAGTTTTGGACTGTTGATGCTCATTTTGTTCATGATGGCGGGAAGCAACAAATGGAACCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

484

Amino Acids

55.46

Weight (kDa)

9.04

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 59 - 396 3.6e-96 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 1041
AccB7I CCANNNNNTGG 2 cut(s) 593, 706
AccI GTMKAC 1 cut(s) 756
AccIII TCCGGA 1 cut(s) 850
AciI CCGC 4 cut(s) 178, 455, 1168, 1425
AclWI GGATC 3 cut(s) 51, 134, 324
AcoI YGGCCR 2 cut(s) 510, 670
AcsI RAATTY 5 cut(s) 644, 770, 802, 836, 846
AcuI CTGAAG 1 cut(s) 1341
AcvI CACGTG 1 cut(s) 743
AcyI GRCGYC 1 cut(s) 814
AfaI GTAC 2 cut(s) 97, 866
AfiI CCNNNNNNNGG 3 cut(s) 454, 593, 706
AgsI TTSAA 8 cut(s) 371, 649, 769, 775, 808, 841, 959, 1069
AhdI GACNNNNNGTC 1 cut(s) 1258
AjnI CCWGG 1 cut(s) 692
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
AluBI AGCT 9 cut(s) 63, 238, 392, 452, 584, 685, 920, 1065, 1214
AluI AGCT 9 cut(s) 63, 238, 392, 452, 584, 685, 920, 1065, 1214
Alw21I GWGCWC 2 cut(s) 679, 1123
Alw26I GTCTC 3 cut(s) 488, 694, 1183
Alw44I GTGCAC 2 cut(s) 675, 1119
AlwI GGATC 3 cut(s) 51, 134, 324
Aor13HI TCCGGA 1 cut(s) 850
AoxI GGCC 2 cut(s) 510, 670
ApaLI GTGCAC 2 cut(s) 675, 1119
ApeKI GCWGC 3 cut(s) 452, 458, 467
ApoI RAATTY 5 cut(s) 644, 770, 802, 836, 846
AspS9I GGNCC 1 cut(s) 697
AsuC2I CCSGG 1 cut(s) 1046
AsuHPI GGTGA 6 cut(s) 569, 809, 943, 1159, 1280, 1370
AvaII GGWCC 1 cut(s) 697
BaeGI GKGCMC 3 cut(s) 679, 863, 1123
BalI TGGCCA 1 cut(s) 512
BanI GGYRCC 1 cut(s) 1041
BbrPI CACGTG 1 cut(s) 743
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 2 cut(s) 679, 1123
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 3 cut(s) 439, 454, 470
BccI CCATC 5 cut(s) 409, 503, 884, 1259, 1415
BceAI ACGGC 2 cut(s) 657, 1055
BciT130I CCWGG 1 cut(s) 694
BclI TGATCA 1 cut(s) 1032
BcnI CCSGG 1 cut(s) 1046
BcoDI GTCTC 3 cut(s) 488, 694, 1183
BfaI CTAG 5 cut(s) 191, 581, 944, 1215, 1245
BfmI CTRYAG 1 cut(s) 1372
BglII AGATCT 1 cut(s) 589
BisI GCNGC 4 cut(s) 453, 456, 459, 468
BlsI GCNGC 4 cut(s) 454, 457, 460, 469
Bme1390I CCNGG 2 cut(s) 694, 1046
Bme18I GGWCC 1 cut(s) 697
BmeRI GACNNNNNGTC 1 cut(s) 1258
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 3 cut(s) 698, 1043, 1443
BmrFI CCNGG 2 cut(s) 694, 1046
BmsI GCATC 2 cut(s) 1155, 1393
BpiI GAAGAC 1 cut(s) 590
BplI GAGNNNNNCTC 2 cut(s) 674, 706
BpmI CTGGAG 2 cut(s) 506, 570
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 1046
Bsa29I ATCGAT 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 814
BsaJI CCNNGG 4 cut(s) 71, 507, 693, 1445
BsaWI WCCGGW 1 cut(s) 850
Bsc4I CCNNNNNNNGG 3 cut(s) 454, 593, 706
Bse3DI GCAATG 2 cut(s) 23, 634
BseAI TCCGGA 1 cut(s) 850
BseBI CCWGG 1 cut(s) 694
BseCI ATCGAT 1 cut(s) 352
BseDI CCNNGG 4 cut(s) 71, 507, 693, 1445
BseGI GGATG 5 cut(s) 401, 859, 954, 1035, 1342
BseLI CCNNNNNNNGG 3 cut(s) 454, 593, 706
BseMI GCAATG 2 cut(s) 23, 634
BseMII CTCAG 5 cut(s) 67, 144, 462, 894, 1221
BseSI GKGCMC 3 cut(s) 679, 863, 1123
BseXI GCAGC 3 cut(s) 439, 454, 470
BseYI CCCAGC 1 cut(s) 448
BshFI GGCC 2 cut(s) 512, 672
BshNI GGYRCC 1 cut(s) 1041
BshVI ATCGAT 1 cut(s) 352
BsiHKAI GWGCWC 2 cut(s) 679, 1123
BsiSI CCGG 2 cut(s) 851, 1046
BslFI GGGAC 1 cut(s) 710
BslI CCNNNNNNNGG 3 cut(s) 454, 593, 706
BsmAI GTCTC 3 cut(s) 488, 694, 1183
BsmFI GGGAC 1 cut(s) 710
BsnI GGCC 2 cut(s) 512, 672
Bsp1286I GDGCHC 3 cut(s) 679, 863, 1123
Bsp13I TCCGGA 1 cut(s) 850
Bsp143I GATC 5 cut(s) 56, 126, 329, 589, 1032
BspACI CCGC 4 cut(s) 178, 455, 1168, 1425
BspANI GGCC 2 cut(s) 512, 672
BspCNI CTCAG 5 cut(s) 66, 143, 463, 893, 1222
BspDI ATCGAT 1 cut(s) 352
BspEI TCCGGA 1 cut(s) 850
BspHI TCATGA 1 cut(s) 1417
BspLI GGNNCC 3 cut(s) 698, 1043, 1443
BspPI GGATC 3 cut(s) 51, 134, 324
BspT107I GGYRCC 1 cut(s) 1041
BsrDI GCAATG 2 cut(s) 23, 634
BssECI CCNNGG 4 cut(s) 71, 507, 693, 1445
BssMI GATC 5 cut(s) 56, 126, 329, 589, 1032
BssNI GRCGYC 1 cut(s) 814
BssT1I CCWWGG 3 cut(s) 71, 507, 1445
Bst2UI CCWGG 1 cut(s) 694
Bst4CI ACNGT 7 cut(s) 100, 175, 655, 955, 1125, 1298, 1399
Bst6I CTCTTC 5 cut(s) 380, 547, 803, 908, 1192
BstACI GRCGYC 1 cut(s) 814
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 743
BstDEI CTNAG 6 cut(s) 53, 130, 471, 880, 1193, 1230
BstF5I GGATG 5 cut(s) 401, 859, 954, 1035, 1342
BstKTI GATC 5 cut(s) 59, 129, 332, 592, 1035
BstMAI GTCTC 3 cut(s) 488, 694, 1183
BstMBI GATC 5 cut(s) 56, 126, 329, 589, 1032
BstMWI GCNNNNNNNGC 4 cut(s) 458, 464, 467, 784
BstNI CCWGG 1 cut(s) 694
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 692, 1044
BstSFI CTRYAG 1 cut(s) 1372
BstSLI GKGCMC 3 cut(s) 679, 863, 1123
BstV1I GCAGC 3 cut(s) 439, 454, 470
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 3 cut(s) 56, 126, 589
BstYI RGATCY 3 cut(s) 56, 126, 589
Bsu15I ATCGAT 1 cut(s) 352
BsuRI GGCC 2 cut(s) 512, 672
BsuTUI ATCGAT 1 cut(s) 352
BtsCI GGATG 5 cut(s) 401, 859, 954, 1035, 1342
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 4 cut(s) 245, 1092, 1121, 1227
CciI TCATGA 1 cut(s) 1417
Cfr13I GGNCC 1 cut(s) 697
ClaI ATCGAT 1 cut(s) 352
CseI GACGC 2 cut(s) 793, 803
Csp6I GTAC 2 cut(s) 96, 865
CviAII CATG 3 cut(s) 200, 723, 1418
CviQI GTAC 2 cut(s) 96, 865
DdeI CTNAG 6 cut(s) 53, 130, 471, 880, 1193, 1230
DpnI GATC 5 cut(s) 58, 128, 331, 591, 1034
DpnII GATC 5 cut(s) 56, 126, 329, 589, 1032
DriI GACNNNNNGTC 1 cut(s) 1258
EaeI YGGCCR 2 cut(s) 510, 670
Eam1104I CTCTTC 5 cut(s) 380, 547, 803, 908, 1192
Eam1105I GACNNNNNGTC 1 cut(s) 1258
EarI CTCTTC 5 cut(s) 380, 547, 803, 908, 1192
Eco130I CCWWGG 3 cut(s) 71, 507, 1445
Eco47I GGWCC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 1341
Eco72I CACGTG 1 cut(s) 743
EcoRII CCWGG 1 cut(s) 692
EcoT14I CCWWGG 3 cut(s) 71, 507, 1445
ErhI CCWWGG 3 cut(s) 71, 507, 1445
FaeI CATG 3 cut(s) 203, 726, 1421
FaqI GGGAC 1 cut(s) 710
FatI CATG 3 cut(s) 199, 722, 1417
FauI CCCGC 1 cut(s) 1418
FbaI TGATCA 1 cut(s) 1032
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 4 cut(s) 453, 456, 459, 468
FokI GGATG 5 cut(s) 388, 866, 961, 1042, 1349
Fsp4HI GCNGC 4 cut(s) 453, 456, 459, 468
FspBI CTAG 5 cut(s) 191, 581, 944, 1215, 1245
GluI GCNGC 4 cut(s) 453, 456, 459, 468
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 2 cut(s) 506, 570
HaeIII GGCC 2 cut(s) 512, 672
HapII CCGG 2 cut(s) 851, 1046
HgaI GACGC 2 cut(s) 793, 803
Hin1I GRCGYC 1 cut(s) 814
Hin1II CATG 3 cut(s) 203, 726, 1421
HincII GTYRAC 2 cut(s) 658, 783
HindII GTYRAC 2 cut(s) 658, 783
HinfI GANTC 7 cut(s) 76, 346, 503, 896, 985, 1082, 1259
HpaII CCGG 2 cut(s) 851, 1046
HphI GGTGA 6 cut(s) 569, 809, 943, 1159, 1280, 1370
Hpy166II GTNNAC 6 cut(s) 577, 658, 677, 757, 783, 1121
Hpy188I TCNGA 7 cut(s) 56, 133, 502, 791, 883, 1264, 1305
Hpy188III TCNNGA 7 cut(s) 103, 523, 587, 649, 728, 851, 1418
Hpy8I GTNNAC 6 cut(s) 577, 658, 677, 757, 783, 1121
HpyAV CCTTC 3 cut(s) 28, 195, 1348
HpyCH4III ACNGT 7 cut(s) 100, 175, 655, 955, 1125, 1298, 1399
HpyCH4IV ACGT 2 cut(s) 223, 742
HpyCH4V TGCA 5 cut(s) 28, 410, 627, 677, 1121
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 464, 467, 784
HpyF3I CTNAG 6 cut(s) 53, 130, 471, 880, 1193, 1230
HpySE526I ACGT 2 cut(s) 223, 742
Hsp92I GRCGYC 1 cut(s) 814
Hsp92II CATG 3 cut(s) 203, 726, 1421
Kpn2I TCCGGA 1 cut(s) 850
Ksp22I TGATCA 1 cut(s) 1032
Kzo9I GATC 5 cut(s) 56, 126, 329, 589, 1032
LmnI GCTCC 3 cut(s) 397, 589, 792
Lsp1109I GCAGC 3 cut(s) 439, 454, 470
LweI GCATC 2 cut(s) 1155, 1393
MaeI CTAG 5 cut(s) 191, 581, 944, 1215, 1245
MaeII ACGT 2 cut(s) 223, 742
MaeIII GTNAC 3 cut(s) 43, 738, 815
MalI GATC 5 cut(s) 58, 128, 331, 591, 1034
MboI GATC 5 cut(s) 56, 126, 329, 589, 1032
MboII GAAGA 9 cut(s) 367, 534, 590, 820, 925, 1144, 1209, 1219, 1334
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 3 cut(s) 56, 126, 589
MhlI GDGCHC 3 cut(s) 679, 863, 1123
MlsI TGGCCA 1 cut(s) 512
MluNI TGGCCA 1 cut(s) 512
MlyI GAGTC 4 cut(s) 497, 905, 979, 1268
MmeI TCCRAC 2 cut(s) 1038, 1107
Mox20I TGGCCA 1 cut(s) 512
MroI TCCGGA 1 cut(s) 850
MscI TGGCCA 1 cut(s) 512
MseI TTAA 3 cut(s) 479, 749, 1221
Msp20I TGGCCA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 2 cut(s) 851, 1046
MspR9I CCNGG 2 cut(s) 694, 1046
MunI CAATTG 1 cut(s) 900
MvaI CCWGG 1 cut(s) 694
MwoI GCNNNNNNNGC 4 cut(s) 458, 464, 467, 784
NciI CCSGG 1 cut(s) 1046
NdeII GATC 5 cut(s) 56, 126, 329, 589, 1032
NlaIII CATG 3 cut(s) 203, 726, 1421
NlaIV GGNNCC 3 cut(s) 698, 1043, 1443
NmuCI GTSAC 3 cut(s) 43, 738, 815
NspI RCATGY 1 cut(s) 203
PagI TCATGA 1 cut(s) 1417
PfeI GAWTC 3 cut(s) 76, 346, 1082
PflMI CCANNNNNTGG 2 cut(s) 593, 706
PkrI GCNGC 4 cut(s) 454, 457, 460, 469
PleI GAGTC 4 cut(s) 497, 904, 979, 1267
PmaCI CACGTG 1 cut(s) 743
PmlI CACGTG 1 cut(s) 743
PpsI GAGTC 4 cut(s) 497, 904, 979, 1267
Ppu21I YACGTR 1 cut(s) 743
PsiI TTATAA 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 692
PspCI CACGTG 1 cut(s) 743
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 692
PspN4I GGNNCC 3 cut(s) 698, 1043, 1443
PspPI GGNCC 1 cut(s) 697
PsuI RGATCY 3 cut(s) 56, 126, 589
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 97, 866
RsaNI GTAC 2 cut(s) 96, 865
SaqAI TTAA 3 cut(s) 479, 749, 1221
SatI GCNGC 4 cut(s) 453, 456, 459, 468
Sau3AI GATC 5 cut(s) 56, 126, 329, 589, 1032
Sau96I GGNCC 1 cut(s) 697
SchI GAGTC 4 cut(s) 497, 905, 979, 1268
ScrFI CCNGG 2 cut(s) 694, 1046
SduI GDGCHC 3 cut(s) 679, 863, 1123
SfaNI GCATC 2 cut(s) 1155, 1393
SfcI CTRYAG 1 cut(s) 1372
SinI GGWCC 1 cut(s) 697
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SsiI CCGC 4 cut(s) 178, 455, 1168, 1425
SspMI CTAG 5 cut(s) 191, 581, 944, 1215, 1245
StyD4I CCNGG 2 cut(s) 692, 1044
StyI CCWWGG 3 cut(s) 71, 507, 1445
TaaI ACNGT 7 cut(s) 100, 175, 655, 955, 1125, 1298, 1399
TaiI ACGT 2 cut(s) 226, 745
TaqI TCGA 3 cut(s) 301, 352, 553
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 3 cut(s) 76, 346, 1082
Tru1I TTAA 3 cut(s) 479, 749, 1221
Tru9I TTAA 3 cut(s) 479, 749, 1221
TscAI CASTG 4 cut(s) 252, 1092, 1128, 1234
TseFI GTSAC 3 cut(s) 43, 738, 815
TseI GCWGC 3 cut(s) 452, 458, 467
Tsp45I GTSAC 3 cut(s) 43, 738, 815
TspDTI ATGAA 3 cut(s) 272, 338, 1406
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 4 cut(s) 252, 1092, 1128, 1234
Van91I CCANNNNNTGG 2 cut(s) 593, 706
VneI GTGCAC 2 cut(s) 675, 1119
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 5 cut(s) 644, 770, 802, 836, 846
XceI RCATGY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 756
XspI CTAG 5 cut(s) 191, 581, 944, 1215, 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.