Rroxscaffold_5G00355430

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014357
Physical Location & Seq
Reverse (-)
34082134 .. 34088683
6550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355430.1

Sequence Viewer

Length: 1458 bp
ATGGGGGCGTTGTCGTTGCCCTTCTCATCGCAAAACTTTTTGCCCATTACTTCTGTCAGTTCTGACTTCTTTCCTTTGAATCCTTGCTTATTTGAAGTCAGCAGAAATCATAAAAACAACAGCAAAACCAAAAATATCTCTTCTCCAATTTCTTGCTCATCTGTCAACACTGTTCGTAGTCCTTCACTAGACAGGCATGTTGTGAAACAGAACAAGATACGGTTTGTCCTGAAGTTACAAACACTGCTCCTTTCCAAACCAAGATGCTATATTCCGCTTCAGATTCTTAATAAATGTCGTTCCTACCTTTCCCTATCAAAGCCCCGGTCCATCCGTTCAATGATCCATCGTTACCCTACCATTTTTGAAGTCTTCTCAATTCCAACAGCACCCATGCCATTCAATGCGTCCAAGTCATTATCACAACTCTGTGTCCGTCTAACCCCAGCTGCAGCAGCGCTTGCTGCTCAGGAATCAACTCTAAAATCAGCCATCTCTGACTCCTTGGCTACCAAACTCCAGAAACTTCTTATGCTTTCTTCTCATCACCGACTAGTTCTGTCAAAGTTGGTTCACCTTGGTCCAGATCTTGGTCTTCACCCTAATTTTCGGTCTCGTCTCTGCAATGACCATCCAGAAAAATTCAAGACTATTGATACCTCCTACGGCCGTGCACTTGAGCTTGTATCCTGGGACCAAGACTTGGCAAAACCTTTACCGCCTCCAGAAGTTCAATCACGTGGGCTGATAGTAGACAGGCCTTTGAAGTTCAAGCATTTGAATCTTCGGAAGGGTCTGAATCTGAAGAGGCGACACCAAGACTTTTTGATGAGATTTAGAGAAATTCCAGATGTGTGCCCTTACAATACCCCTGCCTCGGAATTGCCAAAAGAGTCAATTGAGGCAGAGAAAAGAGCTTGTTTGGTGGTGAGAGAAATGCTAGGGATGATGGTTGAAAAGAGAACATTAATAGACCACTTGACACATTTTAGAAAAGAGTTTGGTCTGCCCAACAAGTTGAGAGGGATGATTGTGAGGCACCCTGAGTTATTCTATGTGAGCTTGAAAGGGCAGAGGGACTCTGTATTCCTGGTGGAGGGCTATGATGAGAATGGTTCACTTTTAGACAAGAAGAAAGAAACTTTGGTGATAAAGGAAAAGTTGATGGAGTTGGTCAGGGAAAGCAAGAGGTTGAGAAAAGAGAGGAGGAAAGCTCGCCTTAATAACACTAGGATTGATGACTCTAATGGTGATAATAGTGATGATGAAGATGATGATGATGATGATTTTTATGATGATGGCTTCCAGAATTTGTTTGAGTGTGAGGATCTGTATTTGGATGACATTGGTGATGATAAAAGTGAGACACTAAATTACAGGGAGAATGGTGAGTTTTGGACTGCAGATGCTTATTCTGATGTTGAAGGCAGGGATAGGCAACATTTGGAGCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

485

Amino Acids

55.8

Weight (kDa)

8.86

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 58 - 396 1.8e-95 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1038
AccB7I CCANNNNNTGG 2 cut(s) 590, 703
AccI GTMKAC 1 cut(s) 753
AciI CCGC 2 cut(s) 275, 719
AclWI GGATC 2 cut(s) 337, 1335
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 3 cut(s) 641, 843, 1309
AcuI CTGAAG 3 cut(s) 251, 263, 824
AcvI CACGTG 1 cut(s) 740
AfeI AGCGCT 1 cut(s) 459
AfiI CCNNNNNNNGG 4 cut(s) 590, 703, 877, 1096
AhlI ACTAGT 1 cut(s) 553
AjnI CCWGG 2 cut(s) 689, 1089
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
AluBI AGCT 5 cut(s) 449, 682, 917, 1062, 1214
AluI AGCT 5 cut(s) 449, 682, 917, 1062, 1214
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 3 cut(s) 618, 623, 1358
Alw44I GTGCAC 1 cut(s) 672
AlwI GGATC 2 cut(s) 337, 1335
Aor51HI AGCGCT 1 cut(s) 459
AoxI GGCC 2 cut(s) 667, 758
ApaLI GTGCAC 1 cut(s) 672
ApeKI GCWGC 4 cut(s) 449, 452, 455, 464
ApoI RAATTY 3 cut(s) 641, 843, 1309
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AseI ATTAAT 1 cut(s) 968
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 3 cut(s) 327, 581, 694
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 8 cut(s) 539, 566, 590, 940, 1159, 1262, 1361, 1400
AvaII GGWCC 3 cut(s) 327, 581, 694
BaeGI GKGCMC 2 cut(s) 676, 860
BanI GGYRCC 1 cut(s) 1038
BbrPI CACGTG 1 cut(s) 740
BbsI GAAGAC 2 cut(s) 364, 587
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 4 cut(s) 436, 451, 464, 467
BccI CCATC 7 cut(s) 338, 354, 500, 639, 943, 1159, 1292
BceAI ACGGC 2 cut(s) 654, 682
BciT130I CCWGG 2 cut(s) 691, 1091
BciVI GTATCC 1 cut(s) 697
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 618, 623, 1358
BcuI ACTAGT 1 cut(s) 553
BfaI CTAG 4 cut(s) 188, 554, 941, 1230
BfmI CTRYAG 2 cut(s) 450, 1401
BfoI RGCGCY 1 cut(s) 461
BfuI GTATCC 1 cut(s) 697
BglII AGATCT 1 cut(s) 586
BisI GCNGC 4 cut(s) 450, 453, 456, 465
BlsI GCNGC 4 cut(s) 451, 454, 457, 466
Bme1390I CCNGG 3 cut(s) 325, 691, 1091
Bme18I GGWCC 3 cut(s) 327, 581, 694
BmgT120I GGNCC 3 cut(s) 327, 581, 694
BmiI GGNNCC 3 cut(s) 695, 1040, 1449
BmrFI CCNGG 3 cut(s) 325, 691, 1091
BmsI GCATC 2 cut(s) 254, 1396
BpiI GAAGAC 2 cut(s) 364, 587
BplI GAGNNNNNCTC 2 cut(s) 1198, 1230
BpmI CTGGAG 2 cut(s) 503, 708
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 740
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 6 cut(s) 323, 504, 577, 690, 876, 1451
BsaXI ACNNNNNCTCC 1 cut(s) 1439
Bsc4I CCNNNNNNNGG 4 cut(s) 590, 703, 877, 1096
Bse3DI GCAATG 1 cut(s) 631
BseBI CCWGG 2 cut(s) 691, 1091
BseDI CCNNGG 6 cut(s) 323, 504, 577, 690, 876, 1451
BseGI GGATG 5 cut(s) 330, 631, 951, 1032, 1345
BseLI CCNNNNNNNGG 4 cut(s) 590, 703, 877, 1096
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 2 cut(s) 482, 1035
BseRI GAGGAG 1 cut(s) 1219
BseSI GKGCMC 2 cut(s) 676, 860
BseX3I CGGCCG 1 cut(s) 667
BseXI GCAGC 4 cut(s) 436, 451, 464, 467
BseYI CCCAGC 1 cut(s) 445
Bsh1285I CGRYCG 1 cut(s) 670
BshFI GGCC 2 cut(s) 669, 760
BshNI GGYRCC 1 cut(s) 1038
BsiEI CGRYCG 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 2 cut(s) 707, 1091
BslI CCNNNNNNNGG 4 cut(s) 590, 703, 877, 1096
BsmAI GTCTC 3 cut(s) 618, 623, 1358
BsmBI CGTCTC 1 cut(s) 623
BsmFI GGGAC 2 cut(s) 707, 1091
BsnI GGCC 2 cut(s) 669, 760
Bso31I GGTCTC 1 cut(s) 618
Bsp1286I GDGCHC 2 cut(s) 676, 860
Bsp143I GATC 3 cut(s) 342, 586, 1327
BspACI CCGC 2 cut(s) 275, 719
BspANI GGCC 2 cut(s) 669, 760
BspCNI CTCAG 2 cut(s) 481, 1036
BspLI GGNNCC 3 cut(s) 695, 1040, 1449
BspMAI CTGCAG 2 cut(s) 454, 1405
BspPI GGATC 2 cut(s) 337, 1335
BspT107I GGYRCC 1 cut(s) 1038
BspTNI GGTCTC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 631
BssECI CCNNGG 6 cut(s) 323, 504, 577, 690, 876, 1451
BssMI GATC 3 cut(s) 342, 586, 1327
BssT1I CCWWGG 3 cut(s) 504, 577, 1451
Bst2UI CCWGG 2 cut(s) 691, 1091
Bst4CI ACNGT 2 cut(s) 172, 222
Bst6I CTCTTC 2 cut(s) 145, 800
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 462, 1216
BstDEI CTNAG 2 cut(s) 468, 1044
BstENI CCTNNNNNAGG 1 cut(s) 1094
BstF5I GGATG 5 cut(s) 330, 631, 951, 1032, 1345
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 3 cut(s) 345, 589, 1330
BstMAI GTCTC 3 cut(s) 618, 623, 1358
BstMBI GATC 3 cut(s) 342, 586, 1327
BstMCI CGRYCG 1 cut(s) 670
BstMWI GCNNNNNNNGC 3 cut(s) 455, 461, 464
BstNI CCWGG 2 cut(s) 691, 1091
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 3 cut(s) 323, 689, 1089
BstSFI CTRYAG 2 cut(s) 450, 1401
BstSLI GKGCMC 2 cut(s) 676, 860
BstV1I GCAGC 4 cut(s) 436, 451, 464, 467
BstV2I GAAGAC 2 cut(s) 364, 587
BstX2I RGATCY 2 cut(s) 586, 1327
BstYI RGATCY 2 cut(s) 586, 1327
BstZI CGGCCG 1 cut(s) 667
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 2 cut(s) 669, 760
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 5 cut(s) 330, 631, 951, 1032, 1345
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 168, 242
Cac8I GCNNGC 2 cut(s) 462, 1216
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 3 cut(s) 327, 581, 694
CseI GACGC 1 cut(s) 396
CviAII CATG 2 cut(s) 197, 394
DdeI CTNAG 2 cut(s) 468, 1044
DpnI GATC 3 cut(s) 344, 588, 1329
DpnII GATC 3 cut(s) 342, 586, 1327
EaeI YGGCCR 1 cut(s) 667
EagI CGGCCG 1 cut(s) 667
Eam1104I CTCTTC 2 cut(s) 145, 800
EarI CTCTTC 2 cut(s) 145, 800
EclXI CGGCCG 1 cut(s) 667
Eco130I CCWWGG 3 cut(s) 504, 577, 1451
Eco147I AGGCCT 1 cut(s) 760
Eco31I GGTCTC 1 cut(s) 618
Eco47I GGWCC 3 cut(s) 327, 581, 694
Eco47III AGCGCT 1 cut(s) 459
Eco52I CGGCCG 1 cut(s) 667
Eco57I CTGAAG 3 cut(s) 251, 263, 824
Eco72I CACGTG 1 cut(s) 740
EcoNI CCTNNNNNAGG 1 cut(s) 1094
EcoRII CCWGG 2 cut(s) 689, 1089
EcoT14I CCWWGG 3 cut(s) 504, 577, 1451
ErhI CCWWGG 3 cut(s) 504, 577, 1451
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 2 cut(s) 200, 397
FaiI YATR 8 cut(s) 111, 198, 270, 395, 533, 1056, 1104, 1293
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FaqI GGGAC 2 cut(s) 707, 1091
FatI CATG 2 cut(s) 196, 393
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 4 cut(s) 450, 453, 456, 465
FokI GGATG 5 cut(s) 317, 618, 958, 1039, 1352
Fsp4HI GCNGC 4 cut(s) 450, 453, 456, 465
FspBI CTAG 4 cut(s) 188, 554, 941, 1230
GlaI GCGC 1 cut(s) 459
GluI GCNGC 4 cut(s) 450, 453, 456, 465
GsaI CCCAGC 1 cut(s) 449
GsuI CTGGAG 2 cut(s) 503, 708
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 2 cut(s) 669, 760
HapII CCGG 1 cut(s) 325
HgaI GACGC 1 cut(s) 396
HhaI GCGC 1 cut(s) 460
Hin1II CATG 2 cut(s) 200, 397
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 9 cut(s) 79, 283, 473, 500, 781, 799, 893, 1079, 1241
HpaII CCGG 1 cut(s) 325
HphI GGTGA 8 cut(s) 539, 566, 590, 940, 1159, 1262, 1361, 1400
Hpy166II GTNNAC 5 cut(s) 166, 574, 674, 754, 1118
Hpy188I TCNGA 8 cut(s) 64, 282, 499, 789, 798, 804, 880, 1417
Hpy188III TCNNGA 9 cut(s) 229, 470, 520, 584, 635, 646, 725, 848, 1306
Hpy8I GTNNAC 5 cut(s) 166, 574, 674, 754, 1118
HpyAV CCTTC 4 cut(s) 31, 192, 784, 1418
HpyCH4III ACNGT 2 cut(s) 172, 222
HpyCH4IV ACGT 1 cut(s) 739
HpyCH4V TGCA 4 cut(s) 452, 624, 674, 1403
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 461, 464
HpyF3I CTNAG 2 cut(s) 468, 1044
HpySE526I ACGT 1 cut(s) 739
Hsp92II CATG 2 cut(s) 200, 397
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 3 cut(s) 342, 586, 1327
LmnI GCTCC 2 cut(s) 252, 1447
Lsp1109I GCAGC 4 cut(s) 436, 451, 464, 467
LweI GCATC 2 cut(s) 254, 1396
MaeI CTAG 4 cut(s) 188, 554, 941, 1230
MaeII ACGT 1 cut(s) 739
MaeIII GTNAC 2 cut(s) 234, 350
MalI GATC 3 cut(s) 344, 588, 1329
MboI GATC 3 cut(s) 342, 586, 1327
MboII GAAGA 8 cut(s) 132, 364, 531, 587, 776, 817, 1144, 1280
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 2 cut(s) 586, 1327
MhlI GDGCHC 2 cut(s) 676, 860
MluCI AATT 9 cut(s) 147, 378, 604, 641, 843, 881, 897, 1309, 1372
MlyI GAGTC 4 cut(s) 494, 902, 1073, 1235
MmeI TCCRAC 1 cut(s) 407
MseI TTAA 3 cut(s) 288, 968, 1221
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 3 cut(s) 325, 691, 1091
MunI CAATTG 1 cut(s) 897
MvaI CCWGG 2 cut(s) 691, 1091
MwoI GCNNNNNNNGC 3 cut(s) 455, 461, 464
NciI CCSGG 1 cut(s) 325
NdeII GATC 3 cut(s) 342, 586, 1327
NlaIII CATG 2 cut(s) 200, 397
NlaIV GGNNCC 3 cut(s) 695, 1040, 1449
NspI RCATGY 1 cut(s) 200
PceI AGGCCT 1 cut(s) 760
PfeI GAWTC 5 cut(s) 79, 283, 473, 781, 799
PflMI CCANNNNNTGG 2 cut(s) 590, 703
PkrI GCNGC 4 cut(s) 451, 454, 457, 466
PleI GAGTC 4 cut(s) 494, 901, 1073, 1235
PmaCI CACGTG 1 cut(s) 740
PmlI CACGTG 1 cut(s) 740
PpsI GAGTC 4 cut(s) 494, 901, 1073, 1235
Ppu21I YACGTR 1 cut(s) 740
PshBI ATTAAT 1 cut(s) 968
Psp6I CCWGG 2 cut(s) 689, 1089
PspCI CACGTG 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 2 cut(s) 689, 1089
PspN4I GGNNCC 3 cut(s) 695, 1040, 1449
PspPI GGNCC 3 cut(s) 327, 581, 694
PstI CTGCAG 2 cut(s) 454, 1405
PsuI RGATCY 2 cut(s) 586, 1327
PvuII CAGCTG 1 cut(s) 449
SaqAI TTAA 3 cut(s) 288, 968, 1221
SatI GCNGC 4 cut(s) 450, 453, 456, 465
Sau3AI GATC 3 cut(s) 342, 586, 1327
Sau96I GGNCC 3 cut(s) 327, 581, 694
SchI GAGTC 4 cut(s) 494, 902, 1073, 1235
ScrFI CCNGG 3 cut(s) 325, 691, 1091
SduI GDGCHC 2 cut(s) 676, 860
SfaNI GCATC 2 cut(s) 254, 1396
SfcI CTRYAG 2 cut(s) 450, 1401
SinI GGWCC 3 cut(s) 327, 581, 694
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
SpeI ACTAGT 1 cut(s) 553
Sse9I AATT 9 cut(s) 147, 378, 604, 641, 843, 881, 897, 1309, 1372
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 2 cut(s) 275, 719
SspMI CTAG 4 cut(s) 188, 554, 941, 1230
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 3 cut(s) 323, 689, 1089
StyI CCWWGG 3 cut(s) 504, 577, 1451
TaaI ACNGT 2 cut(s) 172, 222
TaiI ACGT 1 cut(s) 742
TaqII GACCGA 1 cut(s) 600
TasI AATT 9 cut(s) 147, 378, 604, 641, 843, 881, 897, 1309, 1372
TfiI GAWTC 5 cut(s) 79, 283, 473, 781, 799
Tru1I TTAA 3 cut(s) 288, 968, 1221
Tru9I TTAA 3 cut(s) 288, 968, 1221
TscAI CASTG 2 cut(s) 175, 249
TseI GCWGC 4 cut(s) 449, 452, 455, 464
TspDTI ATGAA 1 cut(s) 1281
TspGWI ACGGA 2 cut(s) 323, 425
TspRI CASTG 2 cut(s) 175, 249
Van91I CCANNNNNTGG 2 cut(s) 590, 703
VneI GTGCAC 1 cut(s) 672
VpaK11BI GGWCC 3 cut(s) 327, 581, 694
VspI ATTAAT 1 cut(s) 968
XagI CCTNNNNNAGG 1 cut(s) 1094
XapI RAATTY 3 cut(s) 641, 843, 1309
XceI RCATGY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 4 cut(s) 188, 554, 941, 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.